LOCUS       XM_005272138            3648 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens synuclein alpha interacting protein
            (SNCAIP), transcript variant X9, mRNA.
ACCESSION   XM_005272138
VERSION     XM_005272138.5
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000005.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_005272138.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3648
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="5"
     gene            1..3648
                     /gene="SNCAIP"
                     /gene_synonym="Sph1; SYPH1"
                     /note="synuclein alpha interacting protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 65 ESTs, 112 long SRA reads, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 12 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9627"
                     /db_xref="HGNC:HGNC:11139"
                     /db_xref="MIM:603779"
     CDS             95..3004
                     /gene="SNCAIP"
                     /gene_synonym="Sph1; SYPH1"
                     /codon_start=1
                     /product="synphilin-1 isoform X4"
                     /protein_id="XP_005272195.1"
                     /db_xref="GeneID:9627"
                     /db_xref="HGNC:HGNC:11139"
                     /db_xref="MIM:603779"
                     /translation="MEAPEYLDLDEIDFSDDISYSVTSLKTIPELCRRCDTQNEDRSV
                     SSSSWNCGISTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNESDDQKNQKV
                     VEYQKGGESDLGPQPQELGPGDGVGGPPGKSSEPSTSLGELEHYDLDMDEILDVPYIK
                     SSQQLASFTKVTSEKRILGLCTTINGLSGKACSTGSSESSSSNMAPFCVLSPVKSPHL
                     RKASAVIHDQHKLSTEETEISPPLVKCGSAYEPENQSKDFLNKTFSDPHGRKVEKTTP
                     DCQLRAFHLQSSAAESKPEEQVSGLNRTSSQGPEERSEYLKKVKSILNIVKEGQISLL
                     PHLAADNLDKIHDENGNNLLHIAASQGHAECLQHLTSLMGEDCLNERNTEKLTPAGLA
                     IKNGQLECVRWMVSETEAIAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISL
                     DEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRY
                     LVVVETCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSS
                     PASRKSQWKSPDADDDSVAKSKPGVQEGIQVLGSLSASSRARPKAKDEDSDKILRQLL
                     GKEISENVCTQEKLSLEFQDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDS
                     NNSEDPKTTPVRKADRPRPQPIVESVESMDSAESLHLMIKKHTLASGGRRFPFSIKAS
                     KSLDGHSPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSA
                     LKSPSSKRRTSQNLKLRVTFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQ
                     LKRPFGAFRSIMETLSGNQNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKG
                     KNKAEMYSSCINLSSNMLIEEHLCNDTRHNDINRKMKKSYSIKHIAEPESKELFL"
ORIGIN      
        1 agtcagtccc ttcgcgctcc tgagccgccg gcgcgccggg cgccccggga atttataagt
       61 atttgaccgt actcaaaatg tgcaaggaag aataatggaa gcccctgaat accttgattt
      121 ggatgaaatt gactttagtg atgacatatc ttattcagtc acatcactca agacgatccc
      181 agaactgtgc cgaagatgtg atacgcaaaa cgaagacaga tcagtttcta gctctagctg
      241 gaattgtggc atctcaactc ttattacaaa cacgcaaaag cccacaggaa tcgctgatgt
      301 gtacagtaag ttccgcccag tgaagcgggt ttcgccactg aaacatcagc cagagactct
      361 ggagaacaat gaaagtgatg accaaaagaa ccagaaagtg gttgagtacc agaaaggggg
      421 tgagtctgac ctgggccccc agcctcagga gcttggccct ggagatggag tgggcggccc
      481 accaggtaag agctctgagc ccagcacatc gctgggtgaa ctggagcact acgacctcga
      541 catggatgag attctggatg tgccttatat taaatccagt cagcagcttg cctcttttac
      601 caaggtgact tcagaaaaaa gaattttggg cttatgcaca accatcaatg gcctttctgg
      661 caaagcctgc tctacaggaa gttctgagag ctcatcatcc aacatggcac cattttgtgt
      721 tctttctccc gtgaaaagcc ctcacttgag aaaagcatca gctgtcatcc acgaccagca
      781 caagctgtcc actgaagaaa ccgagatctc acctcctctg gttaaatgtg gctctgcata
      841 tgagcctgaa aaccagagta aagacttcct aaacaagaca tttagtgatc ctcatggtcg
      901 aaaagttgag aagacaacac cagactgcca gctcagggcc ttccacctac aatcctcagc
      961 agcagaatcc aaaccagaag agcaggtcag tggcctaaac cggaccagct cccaaggccc
     1021 agaagaaagg agtgagtatc tgaaaaaagt gaaaagcatc ttgaacattg ttaaagaagg
     1081 acagatctct ctcctgccac acctagctgc agacaatcta gacaaaattc acgacgaaaa
     1141 tggaaacaat ctattacata ttgcggcgtc acagggacac gcagagtgtc tacagcacct
     1201 cacttctttg atgggagaag actgcctcaa tgagcgcaac actgagaagt tgactccagc
     1261 aggcctggcc attaagaatg gtcagttgga gtgcgtacgc tggatggtga gcgaaacaga
     1321 agccattgca gaactgagtt gttctaagga ttttccaagc cttattcatt acgcaggttg
     1381 ctatggccag gaaaagattc ttctgtggct tcttcagttt atgcaagaac agggcatctc
     1441 gttggatgaa gtagaccagg atggcaacag tgccgttcac gtagcctcac agcatggcta
     1501 ccttggatgc atacagacct tggttgaata tggagcaaat gtcaccatgc agaaccacgc
     1561 tggggaaaag ccctcccaga gcgccgagcg gcaggggcac accctgtgct ccaggtacct
     1621 ggtggtggtg gagacctgca tgtcgctggc ctctcaagtg gtgaagttaa ccaagcagct
     1681 aaaggaacaa acagtagaac gtgtcacgct gcagaaccaa ctccaacaat ttctagaagc
     1741 ccagaaatca gagggcaagt cactcccttc ttcacccagt tcaccatcct cacctgcctc
     1801 cagaaagtcc cagtggaaat ctccagatgc agatgatgat tctgtagcca aaagcaagcc
     1861 aggagtccaa gaggggattc aggttcttgg aagcctgtca gcctccagcc gggctagacc
     1921 caaagcaaaa gatgaagatt ctgataaaat cttacgccag ttattgggaa aggaaatctc
     1981 agaaaatgtc tgcacccagg aaaaactgtc cttggaattc caggatgctc aggcttcctc
     2041 tagaaattct aaaaagatcc cactggagaa gagggaactg aagttagcca ggctgagaca
     2101 gctgatgcag aggtcactga gtgagtctga cacagactcc aacaactctg aggaccccaa
     2161 gactacccca gtgaggaagg ctgaccgacc aaggccgcag cccattgtag aaagcgtaga
     2221 gagtatggac agcgcagaaa gcctgcacct gatgattaag aaacacacct tggcatcagg
     2281 gggacgcagg tttcctttca gcatcaaggc ctccaaatcc ctggatggcc acagcccatc
     2341 tcccacctca gagagcagcg aaccagactt agaatcccag tatccaggct cagggagtat
     2401 tcctccaaac cagccctctg gtgaccctca gcagcccagc cctgacagta ctgctgccca
     2461 gaaagttgcc acaagtccca agagtgccct caagtctcca tcttccaagc gtaggacatc
     2521 tcagaactta aaactgagag ttacctttga ggagcctgtg gtgcagatgg agcagcctag
     2581 ccttgaactg aatggagaaa aagacaaaga taagggcagg actctccagc ggacctccac
     2641 aagtaacgaa tcgggggatc aactgaaaag gccttttgga gcctttcgat ctatcatgga
     2701 gacactaagt ggcaaccaaa acaataataa taactaccag gcagccaacc agctgaaaac
     2761 ctctacattg cccttgacct cacttgggag gaagacagat gccaagggaa accctgccag
     2821 ctccgctagc aaaggaaaga ataaggcaga aatgtacagc agctgcatca atctttcctc
     2881 taacatgctg attgaagagc atctgtgtaa cgacacacgg cataatgaca tcaatagaaa
     2941 aatgaagaaa tcctacagca taaagcacat tgctgagcca gagtcaaaag aactcttctt
     3001 gtaaatcact ttttaaattt tctctcactg atgccctttg gaaattattg gaaatttctg
     3061 gactatcctc tttggaaaga gaaccatgaa aacaatgcct caccagcaga agaacagaat
     3121 atcaggatgc cttaaattta tagtagtaga ctgtaaaaga ttcattttgg ggtgatatct
     3181 gtatatataa cttgtttttt taaaagatgc cgtttaaaag catgattggg aaaatgtatg
     3241 ttttttaaga gtagattgat tcaccctacc cacaggacat tcaccaagcc actgatacca
     3301 ttttatattt catcaattgc atgagtattt gctaatgttg attgaacctc cctttcccca
     3361 taatgtgggc agatttggct cagctccttc atgagatcag gtcagtggta ttgtttctgt
     3421 caagagtgtt ttttctgtca tttctacttt ttgtataaag gaaataaaac aatgttaaca
     3481 gccacctata agcttggggc acctactttc taacaaatct gtgatgttct gatttctaag
     3541 ggactttgca agtattttga ttgctgatat ttgatttcag gaacaaactg ctcagtttag
     3601 cagttttccc ataggcgtca aataaaacat tctatatttc attaagta
//
