LOCUS       NM_001306087            1940 bp    mRNA    linear   PRI 03-OCT-2024
DEFINITION  Homo sapiens solute carrier family 35 member F4 (SLC35F4),
            transcript variant 1, mRNA.
ACCESSION   NM_001306087 XM_011536722
VERSION     NM_001306087.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1940)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL049838.3, EG328127.1, BC101319.1, BC101321.1, BX107164.1 and
            AL161804.4.
            
            On May 17, 2019 this sequence version replaced NM_001306087.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (a). The exon combination
            of this variant is inferred from partial transcript and RNA-seq
            alignments.
            
            CCDS Note: This gene lacks full-length transcript support, and
            therefore the exon combination of this CCDS representation is
            inferred from partial human transcripts, RNA-seq data and
            full-length orthologous alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR3476690.248491.1,
                                           SRR1803613.105546.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03465402, SAMN03465403
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000556826.6/ ENSP00000452086.1
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-307               AL049838.3         12584-12890         c
            308-390             EG328127.1         90-172
            391-1074            BC101319.1         1184-1867
            1075-1723           BC101321.1         801-1449
            1724-1938           BX107164.1         15-229              c
            1939-1940           AL161804.4         27070-27071
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="14"
                     /map="14q22.3-q23.1"
     gene            1..1940
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /note="solute carrier family 35 member F4"
                     /db_xref="GeneID:341880"
                     /db_xref="HGNC:HGNC:19845"
     exon            1..370
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /inference="alignment:Splign:2.1.0"
     CDS             268..1725
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /note="isoform a is encoded by transcript variant 1"
                     /codon_start=1
                     /product="solute carrier family 35 member F4 isoform a"
                     /protein_id="NP_001293016.1"
                     /db_xref="CCDS:CCDS76684.1"
                     /db_xref="GeneID:341880"
                     /db_xref="HGNC:HGNC:19845"
                     /translation="MDVKAAPNGVATIEDRILRITGYYGYYPGYSSQKSTSRSSVTRC
                     KPGANCPSSHSGISRQLSPLSVTEDSSAPILELQNQGSSGVCGHRVERQNRSADDGTQ
                     THSENSSQENRIKARCLSCTSMVLKGIWGLLIILSVSSSWVGTTQIVKITYKNFYCPF
                     FMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMKKFRECSRIFGEDGLTLKLFLKRTAP
                     FSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMA
                     ITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTLG
                     FFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVGVVLTYPIL
                     ISIGTVLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLPEEWDEITLRFINS
                     LKEKKSEEHVDDVTDPSIHLRGRGRANGTVSIPLA"
     exon            371..556
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /inference="alignment:Splign:2.1.0"
     exon            557..854
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /inference="alignment:Splign:2.1.0"
     exon            855..1074
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1200
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1393
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1483
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1940
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1855..1860
                     /regulatory_class="polyA_signal_sequence"
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /note="hexamer: AATAAA"
     polyA_site      1888
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /note="major polyA site"
     regulatory      1919..1924
                     /regulatory_class="polyA_signal_sequence"
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
                     /note="hexamer: ATTAAA"
     polyA_site      1940
                     /gene="SLC35F4"
                     /gene_synonym="C14orf36; c14_5373"
ORIGIN      
        1 attcgggcag cagtgctccg ggtggcgcgc gggagagctg ccaggctgac ggagaggccg
       61 gcccgagtgg gggccgctcc gccgccgccg ccgccgccgc cgctgtgatg cggagccggt
      121 gctgcgccgg gcggtggagt cagagcccgg gcgcgggagc aggagctgca agatcagcac
      181 cagcggctcc ggcacctgca ccagctcccg ggccccgcgc tgcgctctcc gccccgccgc
      241 actcggggcc gtcgccccgc gctctctatg gatgtcaagg cggcccccaa cggggtggcc
      301 actatcgagg accggatcct gcggatcacc ggctactatg gctattatcc aggttactcc
      361 agccagaaaa gtacctccag atcatcagtc actagatgta aaccaggagc caactgcccc
      421 agttcacaca gtggcatcag tagacaactg tccccactgt ctgtcaccga agattcctct
      481 gctcctattc ttgaacttca aaaccaagga tcctcaggag tttgtggaca cagagttgag
      541 agacagaaca gatcagcaga cgatgggaca cagactcatt ctgagaacag cagccaagaa
      601 aacagaatca aggctcgctg cctgtcctgc acgtccatgg ttctgaaggg catctgggga
      661 ctcttgatca tcttgtcagt atcatcatct tgggttggaa ctacacagat tgtaaaaatt
      721 acttataaga acttctattg cccatttttc atgacttggt tttcaacaaa ctggaacatt
      781 atgtttttcc cagtctatta ttctggtcat ctagccactg ctcaagaaaa gcaatctcca
      841 atgaaaaaat tcagggaatg cagtcggatt tttggtgaag atggtctgac gctgaaactc
      901 tttcttaaaa gaactgctcc cttttctatt ctatggactt tgactaatta cctttattta
      961 ctggctttaa agaagctgac ggccacggat gtctccgctc tgttctgttg taacaaagcc
     1021 tttgtcttct tgctgtcatg gattgtgctg aaagacaggt tcatgggagt gaggatagtt
     1081 gctgcaataa tggcaattac cggcattgtc atgatggcat atgcagataa tttccacgct
     1141 gattccatca taggagtggc atttgcggtg ggctcagcct ctacatctgc attatataag
     1201 gtcttgttta aaatgtttct tggaagtgcc aactttgggg aagctgcaca ctttgtctcc
     1261 accttgggtt tcttcaattt gatcttcatc tccttcaccc cagtcatctt gtatttcacc
     1321 aaggtggagc actggtcctc ttttgctgct ctgccatggg gctgtctctg tgggatggca
     1381 gggctgtggc tggccttcaa catcctggtg aatgttgggg tggtgctgac atacccaatc
     1441 ctaatctcca ttgggacagt gctcagcgtt cctggaaatg cagctgtgga tctcctaaag
     1501 caggaggtga tattcaatgt tgtccgcctg gctgctacca tcatcatctg cattgggttt
     1561 ctgctgatgc tgttgcctga ggaatgggat gaaatcaccc tgaggttcat caacagcctg
     1621 aaggaaaaga agagtgagga gcatgtggat gatgtgactg atcccagcat acacctgcgg
     1681 ggcagaggca gagccaatgg gacagtgtct ataccactgg cttagagagg gacatatttt
     1741 gaatgcacgt gtatgtatat tctgtgaata taacaaaatt ttctcactac ctgtacactc
     1801 aaacgacagt attaactctg aatttggata aatcatatgt gaaataatgc caacaataaa
     1861 agtttacatt tatatgctta tcaaggaatt ggtgtaaata atcataatgg atttttttat
     1921 taaaacacat ttgtccttgt
//
