LOCUS       XM_047422613            6233 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens semaphorin 4D (SEMA4D), transcript variant
            X41, mRNA.
ACCESSION   XM_047422613
VERSION     XM_047422613.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000009.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6233
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
     gene            1..6233
                     /gene="SEMA4D"
                     /gene_synonym="A8; BB18; C9orf164; CD100; coll-4; COLL4;
                     GR3; M-sema-G; SEMAJ"
                     /note="semaphorin 4D; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 35 ESTs, 996 long
                     SRA reads, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:10507"
                     /db_xref="HGNC:HGNC:10732"
                     /db_xref="MIM:601866"
     CDS             2176..4764
                     /gene="SEMA4D"
                     /gene_synonym="A8; BB18; C9orf164; CD100; coll-4; COLL4;
                     GR3; M-sema-G; SEMAJ"
                     /codon_start=1
                     /product="semaphorin-4D isoform X1"
                     /protein_id="XP_047278569.1"
                     /db_xref="GeneID:10507"
                     /db_xref="HGNC:HGNC:10732"
                     /db_xref="MIM:601866"
                     /translation="MRMCTPIRGLLMALAVMFGTAMAFAPIPRITWEHREVHLVQFHE
                     PDIYNYSALLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGK
                     SKQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDP
                     AHSYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIR
                     KSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLK
                     ARLICSRPDSGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAE
                     EVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQ
                     FVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHK
                     AISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGT
                     CEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFF
                     KHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQC
                     LSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTQGSSP
                     PTPAVQATSSGAITLPPKPAPTGTSCEPKIVINTVPQLHSEKTMYLKSSDNRLLMSLF
                     LFFFVLFLCLFFYNCYKGYLPRQCLKFRSALLIGKKKPKSDFCDREQSLKETLVEPGS
                     FSQQNGEHPKPALDTGYETEQDTITSKVPTDREDSQRIDDLSARDKPFDVKCELKFAD
                     SDADGD"
ORIGIN      
        1 attcagtgca tgggtttcag ggagcagcac tcacggtcca aagagcgtgt gtctcttcct
       61 tgtaatagat cttgcaggat ccgtttctga aaagatccaa cagttcatcc tttccctgtg
      121 agcacaggga gctccctgtt ccagcacctt ctttcggcgg tggcatgaaa cactataaac
      181 tgacttgtca gtcttcaagg gcagagtgac agctttgtgg ccttgatggt gtcaccccag
      241 atcctggtga gtgtcgcatc cttgttggat attctgtggc cgtttggatc ttctgtgaat
      301 cgcctgttgt gtgttgtgac cctgttctgt cgggatgttc agccctcttt tgccaatctg
      361 taggagctct ggatttgtta tagatattga tcttctttct tctgcttgga aaacgtttat
      421 tcctaattct tttctttgcc agtttctttt attaatgtat catttgctgt ccagattaac
      481 tcattttatg gtcgaatatg tctcttttct cttagggctc gtgggtacca gcgtttgtta
      541 agaagattac atgggttgtc tgaggatttt ctggcaggag ttttcttgtt ttgtgtgttt
      601 gaattaaact cttgaacgtg tctagaatgc ttttaacatg aaataatatg cttggggtgg
      661 gggagggcaa ttttgtttcc ttccagtgtg ccagcactaa ttagtcaata atccgtcctt
      721 tgaccaatga attgaatgac agctctgtgg tctgttaggg tctcatgtaa actgggttcc
      781 gtctggggat cctccatccc actcgctggc ctgcttgtct cttcacgtgc ccacatcccg
      841 tcagtagcgg ctgcagagca agtgctgata gctgggagga gtcccctcat gtgctgtgtg
      901 tgtgatgacg tgctttgtga gccgtgatgg caggagtgct cctgtgtatg cctgtatgtg
      961 tttgcctgtg tttctcctta tgactcctgg gcagagcatg ataagggtgg gtacactgta
     1021 gctgtgctag aggggcagcc agggaggagg ccatggaggt ggggagggag gccaaggtga
     1081 agcaggaaaa cagagaccac caggtggacg cagaattatg tctatggtag gtaggtataa
     1141 tttctaaaag gcaaggtgtc taggacaata aatgtaaagc aggtttatta tggggggagc
     1201 agtgaaaaga gaacccttcg tgtcagggac ccacccactg cttggatttc ctttgggcat
     1261 gagtgccctg actctgcccg tggtgggagg atgcatgggc atgcagtggg gtgaccgtgt
     1321 cactgcagct taggtgcctg tgcctggccc agggctgcct gactctgggc ccctgaggat
     1381 gcccatgccc aggcacctct ggcagctggc acctcgcagt ctccaaatgc tctctgtgcc
     1441 ccatcttctg tggcactgct ttagcagggc aggccacacc tatgcaggga gcccaggagg
     1501 tcagggcctg cagttaccca ctggtgaccc cagccccacc catgctgtgg agggagggta
     1561 gagagtttca ggtgccagcc catacaggac tcacagccag gacaggaggc agccaggtcc
     1621 tggccaccag ctcggaggca ggcatggggt ggggtgcagc tgagcgctgc agggccaggg
     1681 ccgtccgcca cccgcctacc ccaggcagat cctcctctgg cggctgctgc tggccggacc
     1741 tgcttcccgg gtggctatta tgggcgggtg gagtccacgc tgtgctttac tgggagggct
     1801 cattttctgt cagacagctg aaggctccac tctgcaggga caacaggacc gtggtacacc
     1861 cgcttcgagc aaagatttct gaagacgtct ttctagaaat gactggaaag tttcaagagg
     1921 cataagatac agcatttctt ctgaggccct gaagaagtat caagtgggct ttgacattgc
     1981 ggtggtgaga gcgacccctc ctcacctgga gaactgggaa atgtggattc tcagggaccg
     2041 cgctgttcac gagctccagg ctgtgctgct ggccctggtc ctggggcgct gagccgcatc
     2101 tgcaatagca cacctgcccg gccacctgct gccgtgagcc tttgctgctg aagcccctgg
     2161 ggtcgcctct acctgatgag gatgtgcacc cccattaggg ggctgctcat ggcccttgca
     2221 gtgatgtttg ggacagcgat ggcatttgca cccatacccc ggatcacctg ggagcacaga
     2281 gaggtgcacc tggtgcagtt tcatgagcca gacatctaca actactcagc cttgctgctg
     2341 agcgaggaca aggacacctt gtacataggt gcccgggagg cggtcttcgc tgtgaacgca
     2401 ctcaacatct ccgagaagca gcatgaggtg tattggaagg tctcagaaga caaaaaagca
     2461 aaatgtgcag aaaaggggaa atcaaaacag acagagtgcc tcaactacat ccgggtgctg
     2521 cagccactca gcgccacttc cctttacgtg tgtgggacca acgcattcca gccggcctgt
     2581 gaccacctga acttaacatc ctttaagttt ctggggaaaa atgaagatgg caaaggaaga
     2641 tgtccctttg acccagcaca cagctacaca tccgtcatgg ttgatggaga actttattcg
     2701 gggacgtcgt ataatttttt gggaagtgaa cccatcatct cccgaaattc ttcccacagt
     2761 cctctgagga cagaatatgc aatcccttgg ctgaacgagc ctagtttcgt gtttgctgac
     2821 gtgatccgaa aaagcccaga cagccccgac ggcgaggatg acagggtcta cttcttcttc
     2881 acggaggtgt ctgtggagta tgagtttgtg ttcagggtgc tgatcccacg gatagcaaga
     2941 gtgtgcaagg gggaccaggg cggcctgagg accttgcaga agaaatggac ctccttcctg
     3001 aaagcccgac tcatctgctc ccggccagac agcggcttgg tcttcaatgt gctgcgggat
     3061 gtcttcgtgc tcaggtcccc gggcctgaag gtgcctgtgt tctatgcact cttcacccca
     3121 cagctgaaca acgtggggct gtcggcagtg tgcgcctaca acctgtccac agccgaggag
     3181 gtcttctccc acgggaagta catgcagagc accacagtgg agcagtccca caccaagtgg
     3241 gtgcgctata atggcccggt acccaagccg cggcctggag cgtgcatcga cagcgaggca
     3301 cgggccgcca actacaccag ctccttgaat ttgccagaca agacgctgca gttcgttaaa
     3361 gaccaccctt tgatggatga ctcggtaacc ccaatagaca acaggcccag gttaatcaag
     3421 aaagatgtga actacaccca gatcgtggtg gaccggaccc aggccctgga tgggactgtc
     3481 tatgatgtca tgtttgtcag cacagaccgg ggagctctgc acaaagccat cagcctcgag
     3541 cacgctgttc acatcatcga ggagacccag ctcttccagg actttgagcc agtccagacc
     3601 ctgctgctgt cttcaaagaa gggcaacagg tttgtctatg ctggctctaa ctcgggcgtg
     3661 gtccaggccc cgctggcctt ctgtgggaag cacggcacct gcgaggactg tgtgctggcg
     3721 cgggacccct actgcgcctg gagcccgccc acagcgacct gcgtggctct gcaccagacc
     3781 gagagcccca gcaggggttt gattcaggag atgagcggcg atgcttctgt gtgcccggat
     3841 aaaagtaaag gaagttaccg gcagcatttt ttcaagcacg gtggcacagc ggaactgaaa
     3901 tgctcccaaa aatccaacct ggcccgggtc ttttggaagt tccagaatgg cgtgttgaag
     3961 gccgagagcc ccaagtacgg tcttatgggc agaaaaaact tgctcatctt caacttgtca
     4021 gaaggagaca gtggggtgta ccagtgcctg tcagaggaga gggttaagaa caaaacggtc
     4081 ttccaagtgg tcgccaagca cgtcctggaa gtgaaggtgg ttccaaagcc cgtagtggcc
     4141 cccaccttgt cagttgttca gacagaaggt agtaggattg ccaccaaagt gttggtggca
     4201 tccacccaag ggtcttctcc cccaacccca gccgtgcagg ccacctcctc cggggccatc
     4261 acccttcctc ccaagcctgc gcccaccggc acatcctgcg aaccaaagat cgtcatcaac
     4321 acggtccccc agctccactc ggagaaaacc atgtatctta agtccagcga caaccgcctc
     4381 ctcatgtccc tcttcctctt cttctttgtt ctcttcctct gcctcttttt ctacaactgc
     4441 tataagggat acctgcccag acagtgcttg aaattccgct cggccctact aattgggaag
     4501 aagaagccca agtcagattt ctgtgaccgt gagcagagcc tgaaggagac gttagtagag
     4561 ccagggagct tctcccagca gaatggggag caccccaagc cagccctgga caccggctat
     4621 gagaccgagc aagacaccat caccagcaaa gtccccacgg atagggagga ctcacagagg
     4681 atcgacgacc tttctgccag ggacaagccc tttgacgtca agtgtgagct gaagttcgct
     4741 gactcagacg cagatggaga ctgaggccgg ctgtgcatcc ccgctggtgc ctcggctgcg
     4801 acgtgtccag gcgtggagag ttttgtgttt ctcctgttca gtatccgagt ctcgtgcagt
     4861 gctgcgtagg ttagcccgca tcgtgcagac aacctcagtc ctcttgtcta ttttctcttg
     4921 ggttgagcct gtgacttggt ttctctttgt ccttttggaa aaatgacaag cattgcatcc
     4981 cagtcttgtg ttccgaagtc agtcggagta cttgaagaag gcccacgggc ggcacggagt
     5041 tcctgagccc tttctgtagt gggggaaagg tggctggacc tctgttggct gagaagagca
     5101 tcccttcagc ttcccctccc cgtagcagcc actaaaagat tatttaattc cagattggaa
     5161 atgacatttt agtttatcag attggtaact tatcgcctgt tgtccagatt ggcacgaacc
     5221 ttttcttcca cttaattatt tttttaggat tttgctttga ttgtgtttat gtcatgggtc
     5281 attttttttt agttacagaa gcagttgtgt taatatttag aagaagatgt atatcttcca
     5341 gattttgtta tatatttggc ataaaatacg gcttacgttg cttaagattc tcagggataa
     5401 acttcctttt gctaaatgca ttctttctgc ttttagaaat gtagacataa acactccccg
     5461 gagcccactc accttttttc tttttctttt ttttttttta actttattcc ttgagggaag
     5521 cattgttttt ggagagattt tctttctgta cttcgtttta cttttctttt tttttaactt
     5581 ttactctctc gaagaagagg accttcccac atccacgagg tgggttttga gcaagggaag
     5641 gtagcctgga tgagctgagt ggagccaggc tggcccagag ctgagatggg agtgcggtac
     5701 aatctggagc ccacagctgt cggtcagaac ctcctgtgag acagatggaa ccttcacaag
     5761 ggcgcctttg gttctctgaa catctccttt ctcttcttgc ttcaattgct tacccactgc
     5821 ctgcccagac tttctatcca gcctcactga gctgcccact actggaaggg aactgggcct
     5881 cggtggccgg ggccgcgagc tgtgaccaca gcaccctcaa gcatacggcg ctgttcctgc
     5941 cactgtcctg aagatgtgaa tgggtggtac gatttcaaca ctggttaatt tcacactcca
     6001 tctccccgct ttgtaaatac ccatcgggaa gagacttttt ttccatggtg aagagcaata
     6061 aactctggat gtttgtgcgc gtgtgtggac agtcttatct tccagcatga taggatttga
     6121 ccattttggt gtaaacattt gtgttttata agatttacct tgtttttatt tttctacttt
     6181 gaattgtata catttggaaa gtacccaaat aaatgagaag cttctatcct tga
//
