LOCUS       XM_047442288            5580 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens retrotransposon Gag like 9 (RTL9),
            transcript variant X7, mRNA.
ACCESSION   XM_047442288
VERSION     XM_047442288.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000023.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5580
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
     gene            1..5580
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /note="retrotransposon Gag like 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 8 ESTs, 20 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:57529"
                     /db_xref="HGNC:HGNC:29245"
                     /db_xref="MIM:300965"
     CDS             401..4567
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /codon_start=1
                     /product="retrotransposon Gag-like protein 9 isoform X1"
                     /protein_id="XP_047298244.1"
                     /db_xref="GeneID:57529"
                     /db_xref="HGNC:HGNC:29245"
                     /db_xref="MIM:300965"
                     /translation="MSIPLHSLRFNNTMREENVEPQNKQMAFCRPMTETRADVQILHS
                     HVQLPIVSTSASDPGGTSTQLMTSPVFDTMSAPLMGVPNSGALSPPLMPASDSGALSP
                     LLMPASDSGALSPLLMPALDSGTLSPLLSTSEYGVMSPGMMTIPDFGTMSATLMVAPD
                     SAEISPLAMPAPSSGVVCTPIMSTSSSEAMSTPLMLAPDSGELSPILMQDMNPGVMST
                     QPVPAPSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAV
                     ASGGTSPQPTSTQNSGGIPTPLMSDLDSGIMSSLLMSSPGSEVMSTPLLSVPDAGEMS
                     TLPKPAPDAEAMSPALMTALPSGVMPTQTMPAPGSGAMSPWSTQNVDSEMMSNPPVRA
                     TASGVMSAPPVRALDSGAMSTPLMGAPASGNMSTLQKTVPASGAMTTSLMTVPSSGVM
                     STEQMSATASRVMSAQLTMAKTSGAMPTGSMKAVAKQYKRATASGKMSTPLRRAPTSG
                     AMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQMRTMASGLTSAAQ
                     MKAMTSGAMSTPLMTAQTSGSTSTLLMRDTASGVMSCPQMRSLASGALSKPLMTPKAS
                     GTMFTEKMTTTASEAMPTLLMRDTVSGALSMPQMTDTASGGLSASLMRDTASGAMSTS
                     QMTATVSGGMSMPLMRAQDPGVMPASLMRAKVSGKMLSQPMSTQDPGGMSMSPMKSMT
                     AGGMQMNSPTSDVMSTPTVRAWTSETMSTPLMRTSDPGERPSLLTRASSSGEMSLPLM
                     RAPASGEIATPLRSPAYGAMSAPQMTATASGMMSSMPQVKAPISGAMSMPLTRSTASG
                     GMSMPLMRAPDSRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTMSTPL
                     RRPSACETVSTELMRASASGHMSTAQTTAMVSGGMSKPLMRAPASGTMPMPLMSAMAS
                     GEMSMPLMETMASGATSTLQTSVANSRSMSLSQTTYTVSGRMATAPIRASASGARSTS
                     FMRASVSGSMPMPLPRATASGCGMGMSMPQMTATDSRGMSTPLMRASGPGTMSTPQTA
                     FGVMSTPEIKATDSGEASTSHINITASGSKPTSHMTATTPETAKPPPKEVPSFGMLTP
                     ALCYLLEEQEAARGSCSVEEEMEIDEEKQMKGFLDDSERMAFLVSLHLGAAERWFILQ
                     MEVGEPLSHENKSFLRRSQGIYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLARH
                     LSWSDAILRTRFLEGLSEAVTTKMGRIFLKVAGSLKELIDRSLYTECQLAEEKDSPGN
                     SSQVLPTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEHGDPQEGLHDHLGQST
                     GHHQKAHTNK"
ORIGIN      
        1 agaactttcg tgagccctgc tccaggtccc aggagaaagt gccagccatg aggactggag
       61 tattgcctgt ctccctgggt agctgattcc tagttgtggt gggaaatctc agtccgattt
      121 ggaaggcaaa gggcctcagc cccgccctac tgactgtgaa ttctacaaca tatggagcgc
      181 ctaccttgtg caaggcattg tggaacacac ctaccctctc ttccatatga cagcccttca
      241 gagacttgaa gacagtgtgt gactctcctg tgagttaaga gcactggctg agtcagacag
      301 acccgagtga caagcccagc ttcgctccct ctcagcggtg agagccaaga ttttcttgcc
      361 tcctgggctc cctccacact atcctgtggc tgtggcagat atgtcaatac ccttacattc
      421 actgcgattc aacaatacaa tgagggagga aaatgttgag ccccaaaaca agcagatggc
      481 cttctgtaga ccaatgacag agaccagagc agacgtacag attctgcatt ctcatgtaca
      541 gttgcctata gtctcaactt cagcctcaga ccctggaggg acatccacac agttgatgac
      601 atctccagtc tttgacacca tgtctgcacc tctaatggga gtaccaaact ctggagcatt
      661 gtccccaccc ctaatgccag cctcagactc tggggcactt tccccattgc taatgccagc
      721 ctcagactct ggggcactgt ccccattgct aatgccagcc ttagattctg gaacattgtc
      781 cccattgctg tccacttcag agtatggggt aatgtcccca gggatgatga caattcctga
      841 ttttggaacg atgtccgcaa cgctaatggt agcaccagat tctgcagaga tatcaccatt
      901 ggcaatgcca gctccatcct ctggagtggt gtgtacacct ataatgagca cttcatcctc
      961 tgaggcaatg tccacaccat taatgctagc cccagattct ggagagttat ccccaattct
     1021 aatgcaagat atgaatcctg gagtgatgtc tacacagcca gtgccagctc ccagctctga
     1081 ggcaatgtcc ccattgcaaa ttacagatga agacaccgaa gcaatgtcca aagtgctaat
     1141 gactgctcta gcctctggag agatatcttc gctgctaatg tcaggcacgg actctgaagc
     1201 aatatcctca ctgataatgt cagctgtagc ttctggaggt acatcacccc agccaacaag
     1261 cacccaaaac tctgggggaa tacctacccc gctcatgtca gatctagact ctggaataat
     1321 gtcatcgctt ttaatgtcat ctccaggctc tgaagtaatg tccacaccgc tactgtcagt
     1381 cccagatgct ggagaaatgt ccacattacc aaagccagct ccagatgctg aagcaatgtc
     1441 cccagcacta atgacggccc taccctctgg agtgatgccc acccaaacga tgccagcccc
     1501 aggctctggg gcgatgtccc catggtcaac acaaaatgta gactctgaaa tgatgtctaa
     1561 tccgccagtg agagcaacag cctctggggt gatgtctgca ccaccagtaa gagctttaga
     1621 ttctggagca atgtccacac cgctaatggg agccccagcc tctggaaata tgtctacatt
     1681 gcaaaagaca gttccagcct ctggagccat gaccacctca ctgatgacag tcccaagctc
     1741 tggagtgatg tccacagagc aaatgtcagc cacagcctct agagtaatgt ccgcacagtt
     1801 aacaatggcc aaaacttctg gagcaatgcc cacaggctct atgaaagccg tggcaaaaca
     1861 atacaagaga gccacagcct ctggaaagat gtccacgcca ctgaggagag ctccaacttc
     1921 tggagcaatg tccacccaac cagttacggc aacagcctct gaaacaatgt ccatgccaca
     1981 attgacagtc ccagcctctg gatcaatgtc catgctgcaa atgagagccc ctgtctctga
     2041 agcaatgtcc atgccacaaa tgagaaccat ggcctcagga ttgacatctg cagcacagat
     2101 gaaagccatg acttctggag caatgtccac cccactaatg acagcccaaa cctctggatc
     2161 aacatccacg ctgttaatga gagacacagc ctcaggagtg atgtcctgtc cacaaatgag
     2221 atctctggcc tctggagcat tgtccaagcc actaatgaca cccaaagcct caggaacgat
     2281 gttcacggag aaaatgacaa ccacagcttc tgaagcaatg cccacactgc taatgagaga
     2341 cacagtttct ggagctctgt ccatgccgca aatgacagac acagcctctg gagggttgtc
     2401 tgcatcgcta atgagagaca cagcttctgg agcaatgtcc acatcacaaa tgacagccac
     2461 agtctctgga gggatgtcca tgccactaat gagagctcaa gacccaggag taatgcctgc
     2521 ctcactaatg agagccaaag tgtctggaaa gatgctcagt cagccaatga gcacccaaga
     2581 tcctggaggg atgtccatgt cgcccatgaa gtccatgacc gctggaggga tgcagatgaa
     2641 ttccccaacc tctgatgtga tgtccacacc aacagtgaga gcctggacct ctgaaacaat
     2701 gtccacacca ctaatgagaa cctcagaccc tggagagagg ccctcactgc tcacaagagc
     2761 ttcatcctct ggagagatgt ccctaccact aatgagagct ccagcttctg gagagatagc
     2821 cacgcctctg agatccccag cttatggagc catgtctgct ccacaaatga cagccacagc
     2881 ctctggaatg atgtcatcca tgccacaagt gaaggctccc atctctggag caatgtccat
     2941 gccactaaca agatccacag cctctggagg gatgtccatg ccactgatga gagccccaga
     3001 ctctagagtg acatccacat cacaaatgat gcccacagct tctggagaca tgtgcacact
     3061 accagtgcga gccccagcct ctggaggggt gtcctcacca ctagtaagag ctccagcctc
     3121 tggaactatg tccacaccac taaggagacc ctcagcctgt gagactgtgt ccacagagtt
     3181 aatgagagct tcagcctctg gacatatgtc cactgcacaa acaacagcca tggtctctgg
     3241 agggatgtcc aagccattaa tgagagcccc ggcctctgga acaatgccca tgcctttaat
     3301 gtcagccatg gcttctggag agatgtctat gccgctaatg gaaaccatgg cctctggagc
     3361 aacgtccaca ttgcaaacca gtgttgcgaa ctctagatct atgtccttgt cacaaacaac
     3421 atataccgtg tctggaagga tggccacagc gccaattaga gcctctgctt ctggagcaag
     3481 gtccacatca tttatgagag cctcagtttc tggatcgatg cccatgccac taccaagagc
     3541 cacagcctct ggatgtggca tgggtatgtc catgccacaa atgacagcca cagactctag
     3601 agggatgtcc acaccactaa tgagggcctc aggccctgga acaatgtcca caccacagac
     3661 agcctttgga gtgatgtcca ctccggaaat caaagccaca gactctggag aggcatccac
     3721 ctctcacatt aacatcacag cctctggatc aaagcccaca tcgcacatga ctgccacaac
     3781 tcctgaaact gcgaaaccac caccaaagga agtgccatcc ttcggaatgt tgaccccagc
     3841 actctgctac ctcttagaag agcaggaagc agcccggggc tcatgctctg tggaggaaga
     3901 gatggagatt gatgaggaga agcaaatgaa ggggtttttg gacgattcag agagaatggc
     3961 atttctggta tctcttcatc tgggagcagc agagaggtgg ttcatcttgc aaatggaggt
     4021 aggagaacct ctctcacatg aaaataaatc tttcctgaga agatcccagg gcatatatga
     4081 ctccctatct gagatagaca tcctcagtgc tgttctttgc catcccaaac agggccaaaa
     4141 gtcagtcagg cagtatgcca ctgacttcct gctgctggcc cgacatttgt cttggtctga
     4201 tgccattcta cggaccaggt ttctggaagg actctcagaa gctgttacca ccaaaatggg
     4261 tcggatcttc ctgaaggtgg ctggcagcct aaaggagctg atagacaggt ctctgtacac
     4321 cgagtgccag ctggctgaag agaaggattc cccaggcaac tcaagccagg ttctgccaac
     4381 agcctgtaag cggaataatg aggaggccat ggggaatgaa ctgagctctc agcagcagac
     4441 tgaggagcac cagcatgttt ccaaacgctg ttactacctg aaagagcatg gagaccccca
     4501 agaaggtctt catgatcacc ttggacagag cacaggccat catcagaagg cccataccaa
     4561 caagtaaaac tccatggaat cttctcctgt gatatctgac tcgaccgcta actggaggac
     4621 tggttcctgg acccattcca ttaaactaca ttataaacct tgttgccttc acccttcagc
     4681 ctcccgctcc aggcacatcc caccttacct ctcacttggc tgatttgacc ttctctttca
     4741 cccacatgcc taagacctgc cctgacaatc agagtaggga ctacaagagt gtatggtgta
     4801 tgaggttctg aactcccatc accaccgagg ccagtcctag ttcttggtcc agggagaagt
     4861 ctaggcagga taaatcatat cttacctcaa aaaaccctta gcgtatcttg ccatgtgtca
     4921 gcaggcaaac ttgaggaagc cctggttcta tttcacctgg caggggagcc tataaggaga
     4981 gcgatgccca ctcctatacc acccttgtaa cccagtagac ttgccccata tgccccaact
     5041 catagcacct aaaatgggtc tccagggtcc ttgccctgtt tatagtatcc atcctgaacc
     5101 attcgttttg acccataata atagtgatag tataatggct accagttatt gataatgtat
     5161 catgtgacag gcattgggct aaactcttga caagcaccat ctcactacat tcttacagta
     5221 acacaacttg ttcttgtgtt gtcagcttct gacctcttga tctgttgttt atggcctttg
     5281 tcttgtccct cagtgggggt tctctagctc tgacctctgg gtgaccccct cagttgttga
     5341 ttgctctcac tccccttggc tgttgtgctt catggccagc actcttgatg agggtcttgg
     5401 tctataaaca ggcatagata gctagaacat aatgtgagca gtgtttgcct tcaggtggtg
     5461 gggttatggg tagtttttat tttcttcctt ctacttctct atacatttca gattctctac
     5521 agtaagcatg tgttacattt gtaattataa aagtaagtaa acttcattta tgaaaaaaga
//
