LOCUS       XM_047442283            5713 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens retrotransposon Gag like 9 (RTL9),
            transcript variant X2, mRNA.
ACCESSION   XM_047442283
VERSION     XM_047442283.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000023.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5713
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
     gene            1..5713
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /note="retrotransposon Gag like 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 8 ESTs, 18 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:57529"
                     /db_xref="HGNC:HGNC:29245"
                     /db_xref="MIM:300965"
     CDS             534..4700
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /codon_start=1
                     /product="retrotransposon Gag-like protein 9 isoform X1"
                     /protein_id="XP_047298239.1"
                     /db_xref="GeneID:57529"
                     /db_xref="HGNC:HGNC:29245"
                     /db_xref="MIM:300965"
                     /translation="MSIPLHSLRFNNTMREENVEPQNKQMAFCRPMTETRADVQILHS
                     HVQLPIVSTSASDPGGTSTQLMTSPVFDTMSAPLMGVPNSGALSPPLMPASDSGALSP
                     LLMPASDSGALSPLLMPALDSGTLSPLLSTSEYGVMSPGMMTIPDFGTMSATLMVAPD
                     SAEISPLAMPAPSSGVVCTPIMSTSSSEAMSTPLMLAPDSGELSPILMQDMNPGVMST
                     QPVPAPSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAV
                     ASGGTSPQPTSTQNSGGIPTPLMSDLDSGIMSSLLMSSPGSEVMSTPLLSVPDAGEMS
                     TLPKPAPDAEAMSPALMTALPSGVMPTQTMPAPGSGAMSPWSTQNVDSEMMSNPPVRA
                     TASGVMSAPPVRALDSGAMSTPLMGAPASGNMSTLQKTVPASGAMTTSLMTVPSSGVM
                     STEQMSATASRVMSAQLTMAKTSGAMPTGSMKAVAKQYKRATASGKMSTPLRRAPTSG
                     AMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQMRTMASGLTSAAQ
                     MKAMTSGAMSTPLMTAQTSGSTSTLLMRDTASGVMSCPQMRSLASGALSKPLMTPKAS
                     GTMFTEKMTTTASEAMPTLLMRDTVSGALSMPQMTDTASGGLSASLMRDTASGAMSTS
                     QMTATVSGGMSMPLMRAQDPGVMPASLMRAKVSGKMLSQPMSTQDPGGMSMSPMKSMT
                     AGGMQMNSPTSDVMSTPTVRAWTSETMSTPLMRTSDPGERPSLLTRASSSGEMSLPLM
                     RAPASGEIATPLRSPAYGAMSAPQMTATASGMMSSMPQVKAPISGAMSMPLTRSTASG
                     GMSMPLMRAPDSRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTMSTPL
                     RRPSACETVSTELMRASASGHMSTAQTTAMVSGGMSKPLMRAPASGTMPMPLMSAMAS
                     GEMSMPLMETMASGATSTLQTSVANSRSMSLSQTTYTVSGRMATAPIRASASGARSTS
                     FMRASVSGSMPMPLPRATASGCGMGMSMPQMTATDSRGMSTPLMRASGPGTMSTPQTA
                     FGVMSTPEIKATDSGEASTSHINITASGSKPTSHMTATTPETAKPPPKEVPSFGMLTP
                     ALCYLLEEQEAARGSCSVEEEMEIDEEKQMKGFLDDSERMAFLVSLHLGAAERWFILQ
                     MEVGEPLSHENKSFLRRSQGIYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLARH
                     LSWSDAILRTRFLEGLSEAVTTKMGRIFLKVAGSLKELIDRSLYTECQLAEEKDSPGN
                     SSQVLPTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEHGDPQEGLHDHLGQST
                     GHHQKAHTNK"
ORIGIN      
        1 agaactttcg tgagccctgc tccaggtccc aggagaaagt gccagccatg aggactggag
       61 tattgcctgt ctccctgggt agctgattcc tagttgtggt gggaaatctc agtccgattt
      121 ggaaggcaaa gggcctcagc cccgccctac tgactgtgaa ttctacaaca tatggagcgc
      181 ctaccttgtg caaggcattg tggcccagcc cgtgaaaatg gatcactctg atgtatgtca
      241 cctttaaaat gctttctagc ccttcaaggg accaagcagg atttaactct tttcatgcac
      301 ttggactttg ctgcttgtag gcacagcagt ctgaagaaca cacctaccct ctcttccata
      361 tgacagccct tcagagactt gaagacagtg tgtgactctc ctgtgagtta agagcactgg
      421 ctgagtcaga cagacccgag tgacaagccc agcttcgctc cctctcagcg gtgagagcca
      481 agattttctt gcctcctggg ctccctccac actatcctgt ggctgtggca gatatgtcaa
      541 tacccttaca ttcactgcga ttcaacaata caatgaggga ggaaaatgtt gagccccaaa
      601 acaagcagat ggccttctgt agaccaatga cagagaccag agcagacgta cagattctgc
      661 attctcatgt acagttgcct atagtctcaa cttcagcctc agaccctgga gggacatcca
      721 cacagttgat gacatctcca gtctttgaca ccatgtctgc acctctaatg ggagtaccaa
      781 actctggagc attgtcccca cccctaatgc cagcctcaga ctctggggca ctttccccat
      841 tgctaatgcc agcctcagac tctggggcac tgtccccatt gctaatgcca gccttagatt
      901 ctggaacatt gtccccattg ctgtccactt cagagtatgg ggtaatgtcc ccagggatga
      961 tgacaattcc tgattttgga acgatgtccg caacgctaat ggtagcacca gattctgcag
     1021 agatatcacc attggcaatg ccagctccat cctctggagt ggtgtgtaca cctataatga
     1081 gcacttcatc ctctgaggca atgtccacac cattaatgct agccccagat tctggagagt
     1141 tatccccaat tctaatgcaa gatatgaatc ctggagtgat gtctacacag ccagtgccag
     1201 ctcccagctc tgaggcaatg tccccattgc aaattacaga tgaagacacc gaagcaatgt
     1261 ccaaagtgct aatgactgct ctagcctctg gagagatatc ttcgctgcta atgtcaggca
     1321 cggactctga agcaatatcc tcactgataa tgtcagctgt agcttctgga ggtacatcac
     1381 cccagccaac aagcacccaa aactctgggg gaatacctac cccgctcatg tcagatctag
     1441 actctggaat aatgtcatcg cttttaatgt catctccagg ctctgaagta atgtccacac
     1501 cgctactgtc agtcccagat gctggagaaa tgtccacatt accaaagcca gctccagatg
     1561 ctgaagcaat gtccccagca ctaatgacgg ccctaccctc tggagtgatg cccacccaaa
     1621 cgatgccagc cccaggctct ggggcgatgt ccccatggtc aacacaaaat gtagactctg
     1681 aaatgatgtc taatccgcca gtgagagcaa cagcctctgg ggtgatgtct gcaccaccag
     1741 taagagcttt agattctgga gcaatgtcca caccgctaat gggagcccca gcctctggaa
     1801 atatgtctac attgcaaaag acagttccag cctctggagc catgaccacc tcactgatga
     1861 cagtcccaag ctctggagtg atgtccacag agcaaatgtc agccacagcc tctagagtaa
     1921 tgtccgcaca gttaacaatg gccaaaactt ctggagcaat gcccacaggc tctatgaaag
     1981 ccgtggcaaa acaatacaag agagccacag cctctggaaa gatgtccacg ccactgagga
     2041 gagctccaac ttctggagca atgtccaccc aaccagttac ggcaacagcc tctgaaacaa
     2101 tgtccatgcc acaattgaca gtcccagcct ctggatcaat gtccatgctg caaatgagag
     2161 cccctgtctc tgaagcaatg tccatgccac aaatgagaac catggcctca ggattgacat
     2221 ctgcagcaca gatgaaagcc atgacttctg gagcaatgtc caccccacta atgacagccc
     2281 aaacctctgg atcaacatcc acgctgttaa tgagagacac agcctcagga gtgatgtcct
     2341 gtccacaaat gagatctctg gcctctggag cattgtccaa gccactaatg acacccaaag
     2401 cctcaggaac gatgttcacg gagaaaatga caaccacagc ttctgaagca atgcccacac
     2461 tgctaatgag agacacagtt tctggagctc tgtccatgcc gcaaatgaca gacacagcct
     2521 ctggagggtt gtctgcatcg ctaatgagag acacagcttc tggagcaatg tccacatcac
     2581 aaatgacagc cacagtctct ggagggatgt ccatgccact aatgagagct caagacccag
     2641 gagtaatgcc tgcctcacta atgagagcca aagtgtctgg aaagatgctc agtcagccaa
     2701 tgagcaccca agatcctgga gggatgtcca tgtcgcccat gaagtccatg accgctggag
     2761 ggatgcagat gaattcccca acctctgatg tgatgtccac accaacagtg agagcctgga
     2821 cctctgaaac aatgtccaca ccactaatga gaacctcaga ccctggagag aggccctcac
     2881 tgctcacaag agcttcatcc tctggagaga tgtccctacc actaatgaga gctccagctt
     2941 ctggagagat agccacgcct ctgagatccc cagcttatgg agccatgtct gctccacaaa
     3001 tgacagccac agcctctgga atgatgtcat ccatgccaca agtgaaggct cccatctctg
     3061 gagcaatgtc catgccacta acaagatcca cagcctctgg agggatgtcc atgccactga
     3121 tgagagcccc agactctaga gtgacatcca catcacaaat gatgcccaca gcttctggag
     3181 acatgtgcac actaccagtg cgagccccag cctctggagg ggtgtcctca ccactagtaa
     3241 gagctccagc ctctggaact atgtccacac cactaaggag accctcagcc tgtgagactg
     3301 tgtccacaga gttaatgaga gcttcagcct ctggacatat gtccactgca caaacaacag
     3361 ccatggtctc tggagggatg tccaagccat taatgagagc cccggcctct ggaacaatgc
     3421 ccatgccttt aatgtcagcc atggcttctg gagagatgtc tatgccgcta atggaaacca
     3481 tggcctctgg agcaacgtcc acattgcaaa ccagtgttgc gaactctaga tctatgtcct
     3541 tgtcacaaac aacatatacc gtgtctggaa ggatggccac agcgccaatt agagcctctg
     3601 cttctggagc aaggtccaca tcatttatga gagcctcagt ttctggatcg atgcccatgc
     3661 cactaccaag agccacagcc tctggatgtg gcatgggtat gtccatgcca caaatgacag
     3721 ccacagactc tagagggatg tccacaccac taatgagggc ctcaggccct ggaacaatgt
     3781 ccacaccaca gacagccttt ggagtgatgt ccactccgga aatcaaagcc acagactctg
     3841 gagaggcatc cacctctcac attaacatca cagcctctgg atcaaagccc acatcgcaca
     3901 tgactgccac aactcctgaa actgcgaaac caccaccaaa ggaagtgcca tccttcggaa
     3961 tgttgacccc agcactctgc tacctcttag aagagcagga agcagcccgg ggctcatgct
     4021 ctgtggagga agagatggag attgatgagg agaagcaaat gaaggggttt ttggacgatt
     4081 cagagagaat ggcatttctg gtatctcttc atctgggagc agcagagagg tggttcatct
     4141 tgcaaatgga ggtaggagaa cctctctcac atgaaaataa atctttcctg agaagatccc
     4201 agggcatata tgactcccta tctgagatag acatcctcag tgctgttctt tgccatccca
     4261 aacagggcca aaagtcagtc aggcagtatg ccactgactt cctgctgctg gcccgacatt
     4321 tgtcttggtc tgatgccatt ctacggacca ggtttctgga aggactctca gaagctgtta
     4381 ccaccaaaat gggtcggatc ttcctgaagg tggctggcag cctaaaggag ctgatagaca
     4441 ggtctctgta caccgagtgc cagctggctg aagagaagga ttccccaggc aactcaagcc
     4501 aggttctgcc aacagcctgt aagcggaata atgaggaggc catggggaat gaactgagct
     4561 ctcagcagca gactgaggag caccagcatg tttccaaacg ctgttactac ctgaaagagc
     4621 atggagaccc ccaagaaggt cttcatgatc accttggaca gagcacaggc catcatcaga
     4681 aggcccatac caacaagtaa aactccatgg aatcttctcc tgtgatatct gactcgaccg
     4741 ctaactggag gactggttcc tggacccatt ccattaaact acattataaa ccttgttgcc
     4801 ttcacccttc agcctcccgc tccaggcaca tcccacctta cctctcactt ggctgatttg
     4861 accttctctt tcacccacat gcctaagacc tgccctgaca atcagagtag ggactacaag
     4921 agtgtatggt gtatgaggtt ctgaactccc atcaccaccg aggccagtcc tagttcttgg
     4981 tccagggaga agtctaggca ggataaatca tatcttacct caaaaaaccc ttagcgtatc
     5041 ttgccatgtg tcagcaggca aacttgagga agccctggtt ctatttcacc tggcagggga
     5101 gcctataagg agagcgatgc ccactcctat accacccttg taacccagta gacttgcccc
     5161 atatgcccca actcatagca cctaaaatgg gtctccaggg tccttgccct gtttatagta
     5221 tccatcctga accattcgtt ttgacccata ataatagtga tagtataatg gctaccagtt
     5281 attgataatg tatcatgtga caggcattgg gctaaactct tgacaagcac catctcacta
     5341 cattcttaca gtaacacaac ttgttcttgt gttgtcagct tctgacctct tgatctgttg
     5401 tttatggcct ttgtcttgtc cctcagtggg ggttctctag ctctgacctc tgggtgaccc
     5461 cctcagttgt tgattgctct cactcccctt ggctgttgtg cttcatggcc agcactcttg
     5521 atgagggtct tggtctataa acaggcatag atagctagaa cataatgtga gcagtgtttg
     5581 ccttcaggtg gtggggttat gggtagtttt tattttcttc cttctacttc tctatacatt
     5641 tcagattctc tacagtaagc atgtgttaca tttgtaatta taaaagtaag taaacttcat
     5701 ttatgaaaaa aga
//
