LOCUS       NM_020769               5426 bp    mRNA    linear   PRI 06-FEB-2024
DEFINITION  Homo sapiens retrotransposon Gag like 9 (RTL9), transcript variant
            2, mRNA.
ACCESSION   NM_020769
VERSION     NM_020769.2
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 5426)
  AUTHORS   Brandt,J., Schrauth,S., Veith,A.M., Froschauer,A., Haneke,T.,
            Schultheis,C., Gessler,M., Leimeister,C. and Volff,J.N.
  TITLE     Transposable elements as a source of genetic innovation: expression
            and evolution of a family of retrotransposon-derived neogenes in
            mammals
  JOURNAL   Gene 345 (1), 101-111 (2005)
   PUBMED   15716091
REFERENCE   2  (bases 1 to 5426)
  AUTHORS   Brandt,J., Veith,A.M. and Volff,J.N.
  TITLE     A family of neofunctionalized Ty3/gypsy retrotransposon genes in
            mammalian genomes
  JOURNAL   Cytogenet Genome Res 110 (1-4), 307-317 (2005)
   PUBMED   16093683
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AB037739.1 and AC000113.1.
            
            On Jan 15, 2010 this sequence version replaced NM_020769.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB037739.1, AY121804.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1085              AB037739.1         1-1085
            1086-1086           AC000113.1         79470-79470         c
            1087-4622           AB037739.1         1087-4622
            4623-5426           AC000113.1         74593-75396         c
FEATURES             Location/Qualifiers
     source          1..5426
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
                     /map="Xq23"
     gene            1..5426
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /note="retrotransposon Gag like 9"
                     /db_xref="GeneID:57529"
                     /db_xref="HGNC:HGNC:29245"
                     /db_xref="MIM:300965"
     exon            1..79
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /inference="alignment:Splign:2.1.0"
     exon            80..195
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /inference="alignment:Splign:2.1.0"
     exon            196..4293
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /inference="alignment:Splign:2.1.0"
     CDS             247..4413
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /note="retrotransposon gag domain-containing protein 1;
                     tumor antigen BJHCC23; tumor antigen BJ-HCC-23; Sushi-Ichi
                     retrotransposon homolog 10; mammalian
                     retrotransposon-derived 9; retrotransposon gag domain
                     containing 1"
                     /codon_start=1
                     /product="retrotransposon Gag-like protein 9"
                     /protein_id="NP_065820.1"
                     /db_xref="CCDS:CCDS14552.1"
                     /db_xref="GeneID:57529"
                     /db_xref="HGNC:HGNC:29245"
                     /db_xref="MIM:300965"
                     /translation="MSIPLHSLRFNNTMREENVEPQNKQMAFCRPMTETRADVQILHS
                     HVQLPIVSTSASDPGGTSTQLMTSPVFDTMSAPLMGVPNSGALSPPLMPASDSGALSP
                     LLMPASDSGALSPLLMPALDSGTLSPLLSTSEYGVMSPGMMTIPDFGTMSATLMVAPD
                     SAEISPLAMPAPSSGVVCTPIMSTSSSEAMSTPLMLAPDSGELSPILMQDMNPGVMST
                     QPVPAPSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAV
                     ASGGTSPQPTSTQNSGGIPTPLMSDLDSGIMSSLLMSSPGSEVMSTPLLSVPDAGEMS
                     TLPKPAPDAEAMSPALMTALPSGVMPTQTMPAPGSGAMSPWSTQNVDSEMMSNPPVRA
                     TASGVMSAPPVRALDSGAMSTPLMGAPASGNMSTLQKTVPASGAMTTSLMTVPSSGVM
                     STEQMSATASRVMSAQLTMAKTSGAMPTGSMKAVAKQYKRATASGKMSTPLRRAPTSG
                     AMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQMRTMASGLTSAAQ
                     MKAMTSGAMSTPLMTAQTSGSTSTLLMRDTASGVMSCPQMRSLASGALSKPLMTPKAS
                     GTMFTEKMTTTASEAMPTLLMRDTVSGALSMPQMTDTASGGLSASLMRDTASGAMSTS
                     QMTATVSGGMSMPLMRAQDPGVMPASLMRAKVSGKMLSQPMSTQDPGGMSMSPMKSMT
                     AGGMQMNSPTSDVMSTPTVRAWTSETMSTPLMRTSDPGERPSLLTRASSSGEMSLPLM
                     RAPASGEIATPLRSPAYGAMSAPQMTATASGMMSSMPQVKAPISGAMSMPLTRSTASG
                     GMSMPLMRAPDSRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTMSTPL
                     RRPSACETVSTELMRASASGHMSTAQTTAMVSGGMSKPLMRAPASGTMPMPLMSAMAS
                     GEMSMPLMETMASGATSTLQTSVANSRSMSLSQTTYTVSGRMATAPIRASASGARSTS
                     FMRASVSGSMPMPLPRATASGCGMGMSMPQMTATDSRGMSTPLMRASGPGTMSTPQTA
                     FGVMSTPEIKATDSGEASTSHINITASGSKPTSHMTATTPETAKPPPKEVPSFGMLTP
                     ALCYLLEEQEAARGSCSVEEEMEIDEEKQMKGFLDDSERMAFLVSLHLGAAERWFILQ
                     MEVGEPLSHENKSFLRRSQGIYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLARH
                     LSWSDAILRTRFLEGLSEAVTTKMGRIFLKVAGSLKELIDRSLYTECQLAEEKDSPGN
                     SSQVLPTACKRNNEEAMGNELSSQQQTEEHQHVSKRCYYLKEHGDPQEGLHDHLGQST
                     GHHQKAHTNK"
     exon            4294..5426
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5402..5407
                     /regulatory_class="polyA_signal_sequence"
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /note="hexamer: AGTAAA"
     polyA_site      5426
                     /gene="RTL9"
                     /gene_synonym="MAR9; MART9; RGAG1; SIRH10"
                     /note="major polyA site"
ORIGIN      
        1 ggcaaagggc ctcagccccg ccctactgac tgtgaattct acaacatatg gagcgcctac
       61 cttgtgcaag gcattgtggc ccttcagaga cttgaagaca gtgtgtgact ctcctgtgag
      121 ttaagagcac tggctgagtc agacagaccc gagtgacaag cccagcttcg ctccctctca
      181 gcggtgagag ccaagatttt cttgcctcct gggctccctc cacactatcc tgtggctgtg
      241 gcagatatgt caataccctt acattcactg cgattcaaca atacaatgag ggaggaaaat
      301 gttgagcccc aaaacaagca gatggccttc tgtagaccaa tgacagagac cagagcagac
      361 gtacagattc tgcattctca tgtacagttg cctatagtct caacttcagc ctcagaccct
      421 ggagggacat ccacacagtt gatgacatct ccagtctttg acaccatgtc tgcacctcta
      481 atgggagtac caaactctgg agcattgtcc ccacccctaa tgccagcctc agactctggg
      541 gcactttccc cattgctaat gccagcctca gactctgggg cactgtcccc attgctaatg
      601 ccagccttag attctggaac attgtcccca ttgctgtcca cttcagagta tggggtaatg
      661 tccccaggga tgatgacaat tcctgatttt ggaacgatgt ccgcaacgct aatggtagca
      721 ccagattctg cagagatatc accattggca atgccagctc catcctctgg agtggtgtgt
      781 acacctataa tgagcacttc atcctctgag gcaatgtcca caccattaat gctagcccca
      841 gattctggag agttatcccc aattctaatg caagatatga atcctggagt gatgtctaca
      901 cagccagtgc cagctcccag ctctgaggca atgtccccat tgcaaattac agatgaagac
      961 accgaagcaa tgtccaaagt gctaatgact gctctagcct ctggagagat atcttcgctg
     1021 ctaatgtcag gcacggactc tgaagcaata tcctcactga taatgtcagc tgtagcttct
     1081 ggaggtacat caccccagcc aacaagcacc caaaactctg ggggaatacc taccccgctc
     1141 atgtcagatc tagactctgg aataatgtca tcgcttttaa tgtcatctcc aggctctgaa
     1201 gtaatgtcca caccgctact gtcagtccca gatgctggag aaatgtccac attaccaaag
     1261 ccagctccag atgctgaagc aatgtcccca gcactaatga cggccctacc ctctggagtg
     1321 atgcccaccc aaacgatgcc agccccaggc tctggggcga tgtccccatg gtcaacacaa
     1381 aatgtagact ctgaaatgat gtctaatccg ccagtgagag caacagcctc tggggtgatg
     1441 tctgcaccac cagtaagagc tttagattct ggagcaatgt ccacaccgct aatgggagcc
     1501 ccagcctctg gaaatatgtc tacattgcaa aagacagttc cagcctctgg agccatgacc
     1561 acctcactga tgacagtccc aagctctgga gtgatgtcca cagagcaaat gtcagccaca
     1621 gcctctagag taatgtccgc acagttaaca atggccaaaa cttctggagc aatgcccaca
     1681 ggctctatga aagccgtggc aaaacaatac aagagagcca cagcctctgg aaagatgtcc
     1741 acgccactga ggagagctcc aacttctgga gcaatgtcca cccaaccagt tacggcaaca
     1801 gcctctgaaa caatgtccat gccacaattg acagtcccag cctctggatc aatgtccatg
     1861 ctgcaaatga gagcccctgt ctctgaagca atgtccatgc cacaaatgag aaccatggcc
     1921 tcaggattga catctgcagc acagatgaaa gccatgactt ctggagcaat gtccacccca
     1981 ctaatgacag cccaaacctc tggatcaaca tccacgctgt taatgagaga cacagcctca
     2041 ggagtgatgt cctgtccaca aatgagatct ctggcctctg gagcattgtc caagccacta
     2101 atgacaccca aagcctcagg aacgatgttc acggagaaaa tgacaaccac agcttctgaa
     2161 gcaatgccca cactgctaat gagagacaca gtttctggag ctctgtccat gccgcaaatg
     2221 acagacacag cctctggagg gttgtctgca tcgctaatga gagacacagc ttctggagca
     2281 atgtccacat cacaaatgac agccacagtc tctggaggga tgtccatgcc actaatgaga
     2341 gctcaagacc caggagtaat gcctgcctca ctaatgagag ccaaagtgtc tggaaagatg
     2401 ctcagtcagc caatgagcac ccaagatcct ggagggatgt ccatgtcgcc catgaagtcc
     2461 atgaccgctg gagggatgca gatgaattcc ccaacctctg atgtgatgtc cacaccaaca
     2521 gtgagagcct ggacctctga aacaatgtcc acaccactaa tgagaacctc agaccctgga
     2581 gagaggccct cactgctcac aagagcttca tcctctggag agatgtccct accactaatg
     2641 agagctccag cttctggaga gatagccacg cctctgagat ccccagctta tggagccatg
     2701 tctgctccac aaatgacagc cacagcctct ggaatgatgt catccatgcc acaagtgaag
     2761 gctcccatct ctggagcaat gtccatgcca ctaacaagat ccacagcctc tggagggatg
     2821 tccatgccac tgatgagagc cccagactct agagtgacat ccacatcaca aatgatgccc
     2881 acagcttctg gagacatgtg cacactacca gtgcgagccc cagcctctgg aggggtgtcc
     2941 tcaccactag taagagctcc agcctctgga actatgtcca caccactaag gagaccctca
     3001 gcctgtgaga ctgtgtccac agagttaatg agagcttcag cctctggaca tatgtccact
     3061 gcacaaacaa cagccatggt ctctggaggg atgtccaagc cattaatgag agccccggcc
     3121 tctggaacaa tgcccatgcc tttaatgtca gccatggctt ctggagagat gtctatgccg
     3181 ctaatggaaa ccatggcctc tggagcaacg tccacattgc aaaccagtgt tgcgaactct
     3241 agatctatgt ccttgtcaca aacaacatat accgtgtctg gaaggatggc cacagcgcca
     3301 attagagcct ctgcttctgg agcaaggtcc acatcattta tgagagcctc agtttctgga
     3361 tcgatgccca tgccactacc aagagccaca gcctctggat gtggcatggg tatgtccatg
     3421 ccacaaatga cagccacaga ctctagaggg atgtccacac cactaatgag ggcctcaggc
     3481 cctggaacaa tgtccacacc acagacagcc tttggagtga tgtccactcc ggaaatcaaa
     3541 gccacagact ctggagaggc atccacctct cacattaaca tcacagcctc tggatcaaag
     3601 cccacatcgc acatgactgc cacaactcct gaaactgcga aaccaccacc aaaggaagtg
     3661 ccatccttcg gaatgttgac cccagcactc tgctacctct tagaagagca ggaagcagcc
     3721 cggggctcat gctctgtgga ggaagagatg gagattgatg aggagaagca aatgaagggg
     3781 tttttggacg attcagagag aatggcattt ctggtatctc ttcatctggg agcagcagag
     3841 aggtggttca tcttgcaaat ggaggtagga gaacctctct cacatgaaaa taaatctttc
     3901 ctgagaagat cccagggcat atatgactcc ctatctgaga tagacatcct cagtgctgtt
     3961 ctttgccatc ccaaacaggg ccaaaagtca gtcaggcagt atgccactga cttcctgctg
     4021 ctggcccgac atttgtcttg gtctgatgcc attctacgga ccaggtttct ggaaggactc
     4081 tcagaagctg ttaccaccaa aatgggtcgg atcttcctga aggtggctgg cagcctaaag
     4141 gagctgatag acaggtctct gtacaccgag tgccagctgg ctgaagagaa ggattcccca
     4201 ggcaactcaa gccaggttct gccaacagcc tgtaagcgga ataatgagga ggccatgggg
     4261 aatgaactga gctctcagca gcagactgag gagcaccagc atgtttccaa acgctgttac
     4321 tacctgaaag agcatggaga cccccaagaa ggtcttcatg atcaccttgg acagagcaca
     4381 ggccatcatc agaaggccca taccaacaag taaaactcca tggaatcttc tcctgtgata
     4441 tctgactcga ccgctaactg gaggactggt tcctggaccc attccattaa actacattat
     4501 aaaccttgtt gccttcaccc ttcagcctcc cgctccaggc acatcccacc ttacctctca
     4561 cttggctgat ttgaccttct ctttcaccca catgcctaag acctgccctg acaatcagag
     4621 tagggactac aagagtgtat ggtgtatgag gttctgaact cccatcacca ccgaggccag
     4681 tcctagttct tggtccaggg agaagtctag gcaggataaa tcatatctta cctcaaaaaa
     4741 cccttagcgt atcttgccat gtgtcagcag gcaaacttga ggaagccctg gttctatttc
     4801 acctggcagg ggagcctata aggagagcga tgcccactcc tataccaccc ttgtaaccca
     4861 gtagacttgc cccatatgcc ccaactcata gcacctaaaa tgggtctcca gggtccttgc
     4921 cctgtttata gtatccatcc tgaaccattc gttttgaccc ataataatag tgatagtata
     4981 atggctacca gttattgata atgtatcatg tgacaggcat tgggctaaac tcttgacaag
     5041 caccatctca ctacattctt acagtaacac aacttgttct tgtgttgtca gcttctgacc
     5101 tcttgatctg ttgtttatgg cctttgtctt gtccctcagt gggggttctc tagctctgac
     5161 ctctgggtga ccccctcagt tgttgattgc tctcactccc cttggctgtt gtgcttcatg
     5221 gccagcactc ttgatgaggg tcttggtcta taaacaggca tagatagcta gaacataatg
     5281 tgagcagtgt ttgccttcag gtggtggggt tatgggtagt ttttattttc ttccttctac
     5341 ttctctatac atttcagatt ctctacagta agcatgtgtt acatttgtaa ttataaaagt
     5401 aagtaaactt catttatgaa aaaaga
//
