LOCUS       XM_047431358            5336 bp    mRNA    linear   PRI 05-OCT-2023
DEFINITION  PREDICTED: Homo sapiens retrotransposon Gag like 1 (RTL1),
            transcript variant X1, mRNA.
ACCESSION   XM_047431358
VERSION     XM_047431358.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000014.9) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Nov 8, 2023 this sequence was replaced by
            NM_001425285.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/02/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5336
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="14"
     gene            1..5336
                     /gene="RTL1"
                     /gene_synonym="HUR1; Mar1; MART1; PEG11; SIRH2"
                     /note="retrotransposon Gag like 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 ESTs, 804 long SRA reads, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:388015"
                     /db_xref="HGNC:HGNC:14665"
                     /db_xref="MIM:611896"
     CDS             301..4377
                     /gene="RTL1"
                     /gene_synonym="HUR1; Mar1; MART1; PEG11; SIRH2"
                     /codon_start=1
                     /product="retrotransposon-like protein 1 isoform X1"
                     /protein_id="XP_047287314.1"
                     /db_xref="GeneID:388015"
                     /db_xref="HGNC:HGNC:14665"
                     /db_xref="MIM:611896"
                     /translation="MIEPSEDSFETMMEHKNPSSKQMESSEGSSNTTEATSGSGVRGE
                     AGPASGPAQEKKEPPSGPLQEMEELPTDLLQDMEEPSSGPRKEIEDPPNDLLQDLEES
                     CNGSHQARGDPLSGASDRMKEASVNPSGAREEQEAHTDLKESGREETPQEQNQTEHST
                     AELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPAPKHFSGDRREFHEFIV
                     LCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQENSPLIGDFPAFLEAMSE
                     VFEYRQALRVAEEAMFTIRQGGRSATEYIDEFQSLVPILGWPDEVLQAHLCQGLNEEI
                     RHYLFRVPQPDSLDSLIVLILQIEEKLAERRAMLRLPPEARPRNLTWIDSPAPERWMV
                     SSWLPSEVHPDINRAHLFLLLMVRVNPYHSVAVQALVDSGADGNFMDEKFAQEHYVEL
                     YEKPYPQPVQSVDGSLIGNEPVWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGIRW
                     LRVHAPEVDWIKGRCTFHSPYCLKNCFRPPPPCIALERHGMSLLPGLPHPYSDLADVF
                     NPKEADDETSDQPSSDGSDDLSESEPSELQQAGDSDHSETFYECPSTAPWEPVGARMQ
                     ERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLELRGTIVEESVNGHRT
                     EDVWKAAFGLELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSM
                     SQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIIT
                     GYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECL
                     KRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIE
                     VEYSQAEMKILPIRAAFMVWCRYLENTEEPIMILLNTEDLASLNNDRLTVLLPGHWVF
                     FFSHFNFDVMELPEQDGGRALPPVRNLRWRRAFQRNTAARQTLLLASRGFPRDPSTES
                     GEEENEEQDELNEQILRQELLAMIPIDQILNSFLAHFSMAQIRAVILHFFRGLLYWKN
                     TLALAAILVLLRVRQCLSLRPAPAMRVARPQPQRSLRLILDSSLIAGSSITTAITQLL
                     TQMPALVGANTIPAQELAELFLGPGRWQRNALHSQAHRGLQFTPGFWLTLCEFFGVRV
                     TPQEGHLPALRQNRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDKQDN
                     DVQEAPPSHTAATHPPRPRHLMDPQVLEFLGSRLLHIHSADGQLHLLSREQAARALSQ
                     FLTLIYRRALPIPAWESQPREQARLEELPDEDEDANLD"
ORIGIN      
        1 acaccccccc agcactcggc acagcctcgc tgagcagcct tcagcagcag ggtgtggtgg
       61 ggagcctcgg agagtctggg gttccatcct ggcccagcct cacaccagct gagagacgac
      121 cgactgagct tcgaggacag gaagccaccg gcatcactaa gccaccggca tcacttcatc
      181 cccagcctca cgcttgggac tgggcccggg gaaggttctg atctccacgg tcccagctac
      241 tgactggacg ccatcacaac cttaccaatc ttcagaatac actcctttcc atccgacgaa
      301 atgatagaac cctctgaaga ctcatttgag acgatgatgg agcataagaa tccatcatca
      361 aaacaaatgg agtcctccga gggctcatcc aacaccaccg aggcgacgtc gggcagtgga
      421 gtgcggggag aggcagggcc agccagcggc ccagcccagg aaaagaagga gccccccagt
      481 ggcccactcc aggaaatgga agagctgccc actgatctac tccaagacat ggaggagcca
      541 tccagtggcc cacgtaagga aatagaggat ccacccaatg acctactcca agacctggag
      601 gagtcatgca acggttcaca ccaggcaagg ggggatccac tcagtggagc atctgatagg
      661 atgaaagaag catcagtcaa cccatcggga gcccgagaag aacaagaggc tcacactgac
      721 ctgaaggaat cgggaaggga ggagactcct caagagcaaa accagaccga gcactcaacc
      781 gcagaactta tggccatggt gaggtccatc atctcgctgt acttccgaat gcaagacctc
      841 aaagagcaac agagagtagc agaagagatc ttgatcaaag ggatcaatgc aggccaactg
      901 cccgccccaa agcacttctc tggcgatcgc agagaattcc acgagttcat cgtactctgc
      961 caactgacct tacagagcta cccaagaatg ttctataacg accgtctgag agttggctat
     1021 gtcatcaatc acctgtccgg cttggcatta gaatgggcca aagctctact gcaggaaaac
     1081 agccccctga tcggagactt cccagccttc ctggaggcca tgtccgaagt gtttgagtac
     1141 cgccaggcac tgcgtgtggc agaagaggcc atgttcacca tcaggcaggg cggccgctct
     1201 gccactgagt acatcgatga gttccagagc ctggtaccca tcttgggctg gccagatgaa
     1261 gtcctgcagg cccacttgtg ccaggggctc aacgaggaga tcaggcacta tctattccgg
     1321 gtccctcagc cggattccct agacagtctg attgtgctca tcctgcaaat agaagagaag
     1381 ctggcagaga gaagagctat gctcaggctg ccccccgagg cccgcccccg gaacctgacc
     1441 tggatcgact cacctgctcc agagaggtgg atggtcagca gctggttgcc cagcgaagtc
     1501 catccggaca tcaatcgcgc ccacctcttc ctgctgctca tggtgagagt gaacccctac
     1561 cacagcgtcg cggtccaggc cctggtggat tcgggagctg acggcaactt catggatgag
     1621 aagttcgccc aagagcacta cgtcgagctc tacgagaagc cgtacccaca gccggtccaa
     1681 tccgtggacg gctcgctgat tggcaacgag cctgtctggc tctacacgga gcccctggtg
     1741 tgtatccacc agaaccacca ggagtccatc gaatttgaca tcgtaccttc accgaacttc
     1801 tctgtggtcc taggcatccg ctggctccga gtccacgccc ccgaagtcga ctggatcaaa
     1861 ggccgctgca ccttccactc tccctactgc ctgaagaact gcttccgccc gcccccgcca
     1921 tgcattgccc tagagaggca cggcatgagc ctgctacccg gactgccaca cccatactca
     1981 gacctggccg acgtgtttaa cccgaaggaa gcagatgatg agacttccga ccagccaagc
     2041 tcagacggat ccgatgatct ttctgaatca gagccctctg agcttcagca ggctggagac
     2101 agtgatcaca gcgagacctt ttacgagtgt ccctccaccg cgccttggga acctgtgggt
     2161 gccaggatgc aagaaagagc caggctacag gaggaatact gggacctgca ggacatgctg
     2221 accaacagac aggactacat acagatgatt ccggaactgt ttgaccagtt acacggagcc
     2281 gagtggttca caaaactgga gctgcgtggg accattgtgg aggaaagcgt gaacgggcac
     2341 cgcaccgaag atgtgtggaa agcagcgttt ggtttggagc ttgaagagat gaagagctac
     2401 cagccgtttg cgctctcccc agaccctatc atacctcaga acgtgattca cttcatccta
     2461 aaggacatgc tagggttctt tgtgctttct tatggccagg aagtcctgat ctactcaatg
     2521 agtcaggagg agcacctcca ccacgtccgc caagtcctgg tccgcttccg ccatcacaac
     2581 gtctactgct ccctggacaa gagccagttc caccgccaaa ccgtggaatt cctgggcttc
     2641 gtcgtcaccc ccaaaggggt gaaactgaac aagaacgtca tgaccatcat aacagggtac
     2701 cctacccctg gctccaagct atctctgcga aacttcatcg aattcgtctt cccctaccgc
     2761 cacttcgtgg agcgcttcag catcatcgca gagcccctgg tgcggcagct gctgagctcc
     2821 taccagttct actggggagt cgaggagcaa gaggccttcg agtgcctgaa gagggctttc
     2881 cgcaaggcgc ctctcctcca ccaccccaag ccccagaacc cattctactt ggaaaccggc
     2941 gtcaccggca cggccctgca cgcctccctg atccaaatcg acgaccaaac cggcaagaga
     3001 gcctgctgcg ctttctactc ccgcaacatc tcccctatcg aggttgagta ctctcaagcg
     3061 gagatgaaga ttcttccaat acgggctgcc ttcatggtgt ggtgccgcta cctggagaac
     3121 accgaggagc ccatcatgat ccttctcaac acagaggatc tagcctctct gaataatgac
     3181 aggctcaccg tacttctccc cgggcattgg gtcttcttct tctcccactt caactttgac
     3241 gtcatggagc tgccagaaca agacggcggc cgagctctgc cacctgtgag aaacctccgg
     3301 tggaggagag ccttccagag gaacactgcc gccaggcaaa ccctgctgct ggcctcaagg
     3361 ggattcccca gggatccatc gacggaatcc ggggaagaag agaatgaaga acaggatgag
     3421 ctcaatgaac agatcctacg gcaagagctg ctggccatga tacccatcga ccagatcctc
     3481 aacagcttcc tcgcccactt cagcatggcc cagatcaggg ccgtcattct gcacttcttc
     3541 cgaggcctcc tgtactggaa gaacacccta gccctggcag ccatcctcgt gctactgcgc
     3601 gtgaggcaat gcctctcgct gcggccggca cccgccatgc gggtggctcg gccccagccc
     3661 cagcgctccc tacgactcat cctggattcg tccctcatcg caggcagcag catcacgaca
     3721 gccatcaccc agctgctcac ccagatgccc gctctcgtag gtgcaaacac catcccagcc
     3781 caggagctgg ctgagctgtt cctgggccct ggccgctggc agcgaaatgc tctgcactcc
     3841 caggcccacc gaggcctgca gttcacccct ggcttctggc tgacgctgtg tgagttcttc
     3901 ggtgtcagag tcacccccca ggagggccac ctccctgccc tgcgtcagaa ccgctacctg
     3961 gagctgcacg tcgttggtga tgaggatgtc gtcttgcgag aagccctgca agacgacctg
     4021 caacgttacc gtcagtgtgg cctgcatgac ggcctgcaag acacctcgca ggacaagcag
     4081 gacaacgacg tgcaggaggc cccacccagc cacacagcag ccacccaccc accccgccca
     4141 cgccacctga tggatcccca ggtcctggaa ttccttggta gccgcctgct ccacatccac
     4201 agtgcagatg gccagctgca cctgctcagc cgggagcagg cagccagggc cctgagccag
     4261 ttcctgaccc tgatctacag gcgggccctg cccatccccg cctgggagag ccagcccagg
     4321 gagcaggcaa ggctagaaga gctgcctgat gaggacgaag atgctaacct cgactgaaga
     4381 cgcctccctg tctccagcaa agagtcccct ctatttctca ccccaacacc tcccgacgtc
     4441 ccctggcctc cccgcgcctc agcctgcttc gcttcccttc ctgccactcc tgacccaaga
     4501 ggaacccact tgtgaagggc aacaacttct tcaactcatc aaccagcaat gccacctgtg
     4561 ctaacggact acccagtcct cagagaccca gcgccagccc tgggctacga gttctccgtt
     4621 ctccaggtcc caagcccatg cccgggagtg acatccatga gggagaaagc agtggtgagc
     4681 aggaagtgac cccatgacgc gtggccagat gaagaagcag gcacagcagg cgcagccaag
     4741 caagcaggtg acggggcccc ccacccggcc tggtgatggc caccctggga cactgacctc
     4801 gggtgctcca ctgacttctt ctacctccac tgccggtgct cctgctcccc tgagctcccg
     4861 cccccgcccc ccaaccccca tcccccaacc tcccgacatc tgatgatgtg gtgcctccct
     4921 cacccccatc acaccctgca agcaaaccca cccccacccc caccacatct gcttcagctt
     4981 ttttgacccc gccttcctct tgccctgagc tctggactta cctggacaaa gccgctcttt
     5041 ggggcatccg gacgtaccag tgccacttac cagacttgca cagcaaagag ggcccctgca
     5101 tgccttgggg cgcctttccc tcccaacact gaacactgga cagtgcaggg gtgcaggggc
     5161 ccctcataca gggatggagt cccagaaggc acacagacac ccaggggacc atgccgagtc
     5221 acagagaggc tctggccaca ccaccgcttt gcaaggggag tagacccttc cccacccccc
     5281 gagctttctc accccccaat ctttttgcac tcctcaaata aagcaaacta aaagac
//
