LOCUS       XM_047433881            4372 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens RPGRIP1 like (RPGRIP1L), transcript variant
            X22, mRNA.
ACCESSION   XM_047433881
VERSION     XM_047433881.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000016.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4372
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
     gene            1..4372
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /note="RPGRIP1 like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 162 ESTs, 382
                     long SRA reads, 1 Protein, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     12 samples with support for all annotated introns"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
     CDS             65..3277
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /codon_start=1
                     /product="protein fantom isoform X18"
                     /protein_id="XP_047289837.1"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
                     /translation="MSGPTDETAGDLPVKDTGLNLFGMGGLQETSTTRTMKSRQAVSR
                     VSREELEDRFLRLHDENILLKQHARKQEDKIKRMATKLIRLVNDKKRYERVGGGPKRL
                     GRDVEMEEMIEQLQEKVHELEKQNETLKNRLISAKQQLQTQGYRQTPYNNVQSRINTG
                     RRKANENAGLQECPRKGIKFQDADVAETPHPMFTKYGNSLLEEARGEIRNLENVIQSQ
                     RGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEMIKLHKQLV
                     EKSNALSAMEGKFIQLQEKQRTLRISHDALMANGDELNMQLKEQRLKCCSLEKQLHSM
                     KFSERRIEELQDRINDLEKERELLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQL
                     ETALKSDLTDKTEILDRLKTERDQNEKLVQENRELQLQYLEQKQQLDELKKRIKLYNQ
                     ENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKDLERSMRELQATHAETVQE
                     LEKTRNMLIMQHKINKDYQMEVEAVTRKMENLQQDYELKVEQYVHLLDIRAARIHKLE
                     AQLKDIAYGTKQYKFKPEIMPDDSVDEFDETIHLERGENLFEIHINKVTFSSEVLQAS
                     GDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEV
                     HQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVPMD
                     QAIRLYRERAKALGYITSNFKGPEHMQSLSQQAPKTAQLSSTDSTDGNLNELHITIRC
                     CNHLQSRASHLQPHPYVVYKFFDFADHDTAIIPSSNDPQFDDHMYFPVPMNMDLDRYL
                     KSESLSFYVFDDSDTQENIYIGKVNVPLISLAHDRCISGIFELTDHQKHPAGTIHVIL
                     KWKFAYLPPSGSITTEDLGNFIRSEEPEVVQRLPPASSVSTLVLAPRPKPRQRLTPVD
                     KKVSFVDIMPHQSDVSQEGSVDEVKENTEKMQQGKDDVSLLSEGQLAEQSLASSEDET
                     EITEDLEPEVEEDMSASDSDDCIIPGPISKNIKQLLAETS"
     polyA_site      4372
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcccgccacg ctgtcggcgc tatagcaacg gtagctagct gcagggccag tggcacgcta
       61 ggccatgtct ggtccaactg atgagactgc aggagacttg cctgtgaaag atacaggtct
      121 aaacctcttt ggaatgggag ggttacaaga aacttcaaca acacggacaa tgaagtctcg
      181 ccaggcagtg tcacgtgtca gtcgtgagga actggaagac agatttttgc gtttgcatga
      241 tgagaacatt ttacttaaac agcatgcccg caagcaggag gataaaatta aaagaatggc
      301 caccaagtta atacggctag ttaatgacaa gaaaagatat gagcgggttg gtggcggccc
      361 caagcggctg ggacgagatg tggaaatgga agaaatgatt gagcagctgc aagagaaagt
      421 tcatgagctt gaaaaacaaa atgaaaccct caaaaacaga ctgatttcag ccaaacagca
      481 acttcaaacc cagggttaca ggcaaactcc atacaataat gtacaatctc gtattaacac
      541 tgggcgtaga aaagcaaatg aaaatgctgg tttacaggaa tgccccagga aaggtataaa
      601 attccaagat gcagatgtag cagaaactcc acatcccatg tttacaaaat atggcaacag
      661 tttacttgaa gaagccagag gagaaataag aaatttagaa aacgttattc agtcacaaag
      721 aggccagata gaggagttag agcacttggc tgagatcctg aaaactcagt tgaggagaaa
      781 agaaaatgaa attgagttat ctcttcttca gcttcgagaa cagcaagcta cagatcaaag
      841 gtcaaatatt cgggacaatg tagaaatgat taagcttcat aaacagctag tagagaaaag
      901 caatgctctt tcagcaatgg aaggaaaatt tattcagctt caagagaagc aaagaactct
      961 cagaatcagc cacgatgctt tgatggcaaa tggggatgaa ttaaacatgc aacttaaaga
     1021 gcagcgttta aaatgctgca gtcttgagaa acaattacat tctatgaagt tttctgaaag
     1081 aagaatagaa gagctgcagg atagaattaa tgatttagaa aaggaacggg aacttttaaa
     1141 ggaaaactat gataaacttt atgacagtgc cttcagtgct gcccatgaag agcaatggaa
     1201 gttaaaggag caacagctga aagtgcagat tgctcagctc gagactgcct tgaagtctga
     1261 cttaacagac aaaactgaaa tccttgacag attaaaaact gaaagagatc aaaatgaaaa
     1321 actcgttcaa gagaatagag aactacagtt acagtatctg gaacaaaagc aacaacttga
     1381 tgaacttaaa aaacgcataa aattgtacaa ccaggagaat gatattaatg ctgatgaatt
     1441 gagtgaagct ctcctactta taaaggctca aaaagaacaa aaaaatggag acctttcctt
     1501 tttagtgaaa gtagatagtg aaattaataa agatctagaa cgctctatga gagagctgca
     1561 agcaactcat gcagaaacgg tgcaagagct ggaaaagaca agaaacatgc taattatgca
     1621 acacaaaatt aataaagatt atcagatgga ggttgaggca gtgacccgta agatggaaaa
     1681 tttgcagcaa gattatgaac tcaaagtgga acagtatgtt catcttcttg atatcagggc
     1741 tgcacgtatc cataaactag aagcccaatt aaaggatatt gcctatggca ccaagcagta
     1801 caaatttaaa ccagaaatca tgccagatga ctctgttgat gaatttgatg aaaccatcca
     1861 cttagaacga ggcgaaaatc tatttgaaat ccatatcaac aaagtaacct tttcttctga
     1921 agttttacag gcatctggag ataaagagcc tgtcactttc tgtacctatg ctttctatga
     1981 ttttgaacta cagacaactc ccgtagtgcg aggccttcat cccgaatata acttcacttc
     2041 tcaatatctt gttcatgtta atgacttatt tttgcaatat attcagaaga atactatcac
     2101 ccttgaggtc caccaggctt atagcacaga atatgaaaca attgcagcat gtcaattaaa
     2161 atttcacgaa attcttgaaa aaagcggccg aatattttgt acagcaagtt tgattggaac
     2221 aaaaggagac atcccaaatt ttggcacagt ggaatactgg ttccgattaa gagttcccat
     2281 ggatcaagca attcgacttt atcgagaaag ggcaaaggct ttggggtata taacatcaaa
     2341 ttttaagggg ccagagcata tgcagtcgtt aagtcagcaa gcacccaaaa ctgctcaact
     2401 cagttctaca gattccacag atggcaactt aaatgaactt cacattacaa taagatgttg
     2461 caaccacctg cagtcccgag caagccacct gcagccacac ccatatgttg tgtacaagtt
     2521 ttttgatttt gcagaccatg atacagctat cattcccagt agcaatgatc cacagtttga
     2581 tgatcatatg tatttcccag tgccaatgaa tatggacttg gatcgatacc ttaagtcaga
     2641 gtctctgagt ttttatgttt ttgatgatag tgatacccag gagaatattt acataggaaa
     2701 agtcaatgtg cctctgattt cgttggcaca tgacaggtgt atctcaggaa tatttgagtt
     2761 aacagaccat caaaagcatc ctgctggcac catccatgtt atattgaaat ggaaatttgc
     2821 ttaccttcca ccaagtggat caataacaac tgaagactta ggaaatttca ttcgcagcga
     2881 agagccagaa gttgttcaaa gacttcctcc agcatcctct gttagcacac tagttttagc
     2941 accaagacct aaaccaagac aacgtttaac acctgtagat aagaaggtat ctttcgtgga
     3001 tatcatgcca catcagagtg atgtttcaca agaaggcagt gtagatgagg taaaagagaa
     3061 tactgagaaa atgcagcaag gaaaagatga tgtgtcttta ctatctgaag gtcagcttgc
     3121 agaacaaagc ttggcatctt ctgaagatga aacagaaata acagaggact tggaaccaga
     3181 agttgaagag gacatgtcag cttctgacag tgatgactgt attattccag gtcctatctc
     3241 caagaatatc aaacagctac ttgctgaaac tagctgactt cttgactcct tttcaagact
     3301 agcataccaa gatgtgttga agaagatttg aactttaaag aattcaaaat gtgagatgct
     3361 ctttgaaact ataatagttt gcctatgtga attcatagac tactcttacc tagatatatc
     3421 cactgataat atgttacagt tatttcattt ctgccaaaac aagtgaagcc ttcttagaaa
     3481 gcaattaatc ttgtgccggt atactttgct tttcttagag cacatggctg aaaagtagta
     3541 tgtaaattga aattttgaga agaaaattat attttttaaa atatatatgg gaagtatact
     3601 gtttaccaga gcatttttta ttgtaagagg gaaaaagttt ttataaagta aatgtaagta
     3661 gagtaaaaag ctctagcttt ttctattcat ctatgttaat ttttcttaag tgattaattg
     3721 tacttttgta gaatttttag tttattgata agaattggaa tatttctttt aactcttcct
     3781 tcacacattc ttagtttaat ctctctttaa aacaaaacca cagaccaggc acagtgcttc
     3841 acacctgaaa tcccaacact ctgggaagcc aaggcaggag gatcatgtga gcacaggagt
     3901 tcaaggctgc agtgagctat gactgcacca ctgcactgca gtctgggtga cagagtgaga
     3961 ttctgtctct caaaaaataa agaaataaag caaaacaata gaacagaaca tttcagttgt
     4021 tgtcacagat tcctccatga aatagagata cccatcgttt ctgttcttga taaatacaaa
     4081 tagaacattt tatctgtcca aagttttatc attattatta tatatttatt aattacaata
     4141 acagcatcca atctatgaaa actcctactt agacctgcaa tagaaccatg tgtatgttgg
     4201 caacgtggct agcatctcag tgaagttgta cattgctctt aactaaggta gaataaactt
     4261 taatttaaca aagaagttta gcaaaataaa taactgtttc tctaaatatt ccaataattc
     4321 taatgtacat atatattttt tctttctaat aaactggatt tttttctcat ta
//
