LOCUS       XM_047433877            6445 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens RPGRIP1 like (RPGRIP1L), transcript variant
            X18, mRNA.
ACCESSION   XM_047433877
VERSION     XM_047433877.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000016.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6445
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
     gene            1..6445
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /note="RPGRIP1 like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 159 ESTs, 249
                     long SRA reads, 1 Protein, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
     CDS             65..3370
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /codon_start=1
                     /product="protein fantom isoform X14"
                     /protein_id="XP_047289833.1"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
                     /translation="MSGPTDETAGDLPVKDTGLNLFGMGGLQETSTTRTMKSRQAVSR
                     VSREELEDRFLRLHDENILLKQHARKQEDKIKRMATKLIRLVNDKKRYERVGGGPKRL
                     GRDVEMEEMIEQLQEKVHELEKQNETLKNRLISAKQQLQTQGYRQTPYNNVQSRINTG
                     RRKANENAGLQECPRKGIKFQDADVAETPHPMFTKYGNSLLEEARGEIRNLENVIQSQ
                     RGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEMIKLHKQLV
                     EKSNALSAMEGKFIQLQEKQRTLRISHDALMANGDELNMQLKEQRLKCCSLEKQLHSM
                     KFSERRIEELQDRINDLEKERELLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQL
                     ETALKSDLTDKTEILDRLKTERGALINQNEKLVQENRELQLQYLEQKQQLDELKKRIK
                     LYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKDLERSMRELQATHAE
                     TVQELEKTRNMLIMQHKINKDYQMEVEAVTRKMENLQQDYELKVEQYVHLLDIRAARI
                     HKLEAQLKDIAYGTKQYKFKPEIMPDDSVDEFDETIHLERGENLFEIHINKVTFSSEV
                     LQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTI
                     TLEVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR
                     VPMDQAIRLYRERAKALGYITSNFKGPEHMQSLSQQAPKTAQLSSTDSTDGNLNELHI
                     TIRCCNHLQSRASHLQPHPYVVYKFFDFADHDTAIIPSSNDPQFDDHMYFPVPMNMDL
                     DRYLKSESLSFYVFDDSDTQENIYIGKVNVPLISLAHDRCISGIFELTDHQKHPAGTI
                     HVILKWKFAYLPPSGSITTEDLGNFIRSEEPEVVQRLPPASSVSTLVLAPRPKPRQRL
                     TPVDKKVSFVDIMPHQSDVSQEGSVDEVKENTEKMQQGKDDVSLLSEGQLAEQSLASS
                     EDETEITEDLEPEVEEDMSASDSDDCIIPGPISKNIKQVRTGNYRLKEQWTLLCSAYL
                     HHSLSLFLLLAVV"
     polyA_site      6445
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcccgccacg ctgtcggcgc tatagcaacg gtagctagct gcagggccag tggcacgcta
       61 ggccatgtct ggtccaactg atgagactgc aggagacttg cctgtgaaag atacaggtct
      121 aaacctcttt ggaatgggag ggttacaaga aacttcaaca acacggacaa tgaagtctcg
      181 ccaggcagtg tcacgtgtca gtcgtgagga actggaagac agatttttgc gtttgcatga
      241 tgagaacatt ttacttaaac agcatgcccg caagcaggag gataaaatta aaagaatggc
      301 caccaagtta atacggctag ttaatgacaa gaaaagatat gagcgggttg gtggcggccc
      361 caagcggctg ggacgagatg tggaaatgga agaaatgatt gagcagctgc aagagaaagt
      421 tcatgagctt gaaaaacaaa atgaaaccct caaaaacaga ctgatttcag ccaaacagca
      481 acttcaaacc cagggttaca ggcaaactcc atacaataat gtacaatctc gtattaacac
      541 tgggcgtaga aaagcaaatg aaaatgctgg tttacaggaa tgccccagga aaggtataaa
      601 attccaagat gcagatgtag cagaaactcc acatcccatg tttacaaaat atggcaacag
      661 tttacttgaa gaagccagag gagaaataag aaatttagaa aacgttattc agtcacaaag
      721 aggccagata gaggagttag agcacttggc tgagatcctg aaaactcagt tgaggagaaa
      781 agaaaatgaa attgagttat ctcttcttca gcttcgagaa cagcaagcta cagatcaaag
      841 gtcaaatatt cgggacaatg tagaaatgat taagcttcat aaacagctag tagagaaaag
      901 caatgctctt tcagcaatgg aaggaaaatt tattcagctt caagagaagc aaagaactct
      961 cagaatcagc cacgatgctt tgatggcaaa tggggatgaa ttaaacatgc aacttaaaga
     1021 gcagcgttta aaatgctgca gtcttgagaa acaattacat tctatgaagt tttctgaaag
     1081 aagaatagaa gagctgcagg atagaattaa tgatttagaa aaggaacggg aacttttaaa
     1141 ggaaaactat gataaacttt atgacagtgc cttcagtgct gcccatgaag agcaatggaa
     1201 gttaaaggag caacagctga aagtgcagat tgctcagctc gagactgcct tgaagtctga
     1261 cttaacagac aaaactgaaa tccttgacag attaaaaact gaaagaggag ccttaataaa
     1321 tcaaaatgaa aaactcgttc aagagaatag agaactacag ttacagtatc tggaacaaaa
     1381 gcaacaactt gatgaactta aaaaacgcat aaaattgtac aaccaggaga atgatattaa
     1441 tgctgatgaa ttgagtgaag ctctcctact tataaaggct caaaaagaac aaaaaaatgg
     1501 agacctttcc tttttagtga aagtagatag tgaaattaat aaagatctag aacgctctat
     1561 gagagagctg caagcaactc atgcagaaac ggtgcaagag ctggaaaaga caagaaacat
     1621 gctaattatg caacacaaaa ttaataaaga ttatcagatg gaggttgagg cagtgacccg
     1681 taagatggaa aatttgcagc aagattatga actcaaagtg gaacagtatg ttcatcttct
     1741 tgatatcagg gctgcacgta tccataaact agaagcccaa ttaaaggata ttgcctatgg
     1801 caccaagcag tacaaattta aaccagaaat catgccagat gactctgttg atgaatttga
     1861 tgaaaccatc cacttagaac gaggcgaaaa tctatttgaa atccatatca acaaagtaac
     1921 cttttcttct gaagttttac aggcatctgg agataaagag cctgtcactt tctgtaccta
     1981 tgctttctat gattttgaac tacagacaac tcccgtagtg cgaggccttc atcccgaata
     2041 taacttcact tctcaatatc ttgttcatgt taatgactta tttttgcaat atattcagaa
     2101 gaatactatc acccttgagg tccaccaggc ttatagcaca gaatatgaaa caattgcagc
     2161 atgtcaatta aaatttcacg aaattcttga aaaaagcggc cgaatatttt gtacagcaag
     2221 tttgattgga acaaaaggag acatcccaaa ttttggcaca gtggaatact ggttccgatt
     2281 aagagttccc atggatcaag caattcgact ttatcgagaa agggcaaagg ctttggggta
     2341 tataacatca aattttaagg ggccagagca tatgcagtcg ttaagtcagc aagcacccaa
     2401 aactgctcaa ctcagttcta cagattccac agatggcaac ttaaatgaac ttcacattac
     2461 aataagatgt tgcaaccacc tgcagtcccg agcaagccac ctgcagccac acccatatgt
     2521 tgtgtacaag ttttttgatt ttgcagacca tgatacagct atcattccca gtagcaatga
     2581 tccacagttt gatgatcata tgtatttccc agtgccaatg aatatggact tggatcgata
     2641 ccttaagtca gagtctctga gtttttatgt ttttgatgat agtgataccc aggagaatat
     2701 ttacatagga aaagtcaatg tgcctctgat ttcgttggca catgacaggt gtatctcagg
     2761 aatatttgag ttaacagacc atcaaaagca tcctgctggc accatccatg ttatattgaa
     2821 atggaaattt gcttaccttc caccaagtgg atcaataaca actgaagact taggaaattt
     2881 cattcgcagc gaagagccag aagttgttca aagacttcct ccagcatcct ctgttagcac
     2941 actagtttta gcaccaagac ctaaaccaag acaacgttta acacctgtag ataagaaggt
     3001 atctttcgtg gatatcatgc cacatcagag tgatgtttca caagaaggca gtgtagatga
     3061 ggtaaaagag aatactgaga aaatgcagca aggaaaagat gatgtgtctt tactatctga
     3121 aggtcagctt gcagaacaaa gcttggcatc ttctgaagat gaaacagaaa taacagagga
     3181 cttggaacca gaagttgaag aggacatgtc agcttctgac agtgatgact gtattattcc
     3241 aggtcctatc tccaagaata tcaaacaggt gagaacggga aattacaggc tgaaagagca
     3301 atggactctt ctgtgcagtg catatttaca tcattctctt tctctgttcc tactcctagc
     3361 agttgtgtga aaactgccat attcaattgg actaaattgc agttccacct ggaaactagg
     3421 ttctctgaac aatgagctgg cattcccagg tgattacaat aacgatgttc agcaaagtat
     3481 gtttaaaact ttgaaaggca caatgcagaa atcaattcac tcgctttaga attcgcatat
     3541 gaaaaattat taaatcactt aggaatcaaa tatgatatct tatcagtgga taaaataagc
     3601 cactctcaat gttttacatg tggaagctta agctagatag agagtaggtt ttaaaatata
     3661 ttttacttgg ccgggtgcgg tggctcacac ctgtaatccc agcactttgg gaggctgagg
     3721 tgggcagatt acctgaggtc aggagttcta gaccagccca accaacatgg tgaaaccctg
     3781 tctctactaa aaatacaaaa attagccggg cgtgttggcg ggcacctgta attccagcta
     3841 ctcgggaggg gaggcaagac agtccttgag cctgggaggc agaggttgca gtgagtcgag
     3901 attgcaccac tgcactccag cctgggcaac agagcaagac tctgtcacaa aaataaataa
     3961 ataaaaataa aatatatttt atgtcaaact ggaaatgttg acatactctc ctagtagaaa
     4021 ttgcttttaa aactattttt tatgctttgc aatttaacta actcttacta atataccatc
     4081 aacatttttc cataacagta tactctattt ctttcaacat acctataata ttccattata
     4141 tggctatact atatttattt aaataagccc cttttgatgg acccttaagt gtttctatga
     4201 ttttttgcta atacaaatat atctgcttaa gatgaacatt attatatata acaatgtttg
     4261 aaaattcatg ttttctccta ttacactctt tgccaaacta atgaataaat tttgccttag
     4321 tgatgatttc atttaaaaag aaacaaatgg ggccagatgt ggtggctgac agctgtaatc
     4381 ctaacacttg aggaagtcca aggcaagagg attgtttgag gatagcagtt caggaccagc
     4441 ctgggcaatg taacaagacc cccatctcta caaaaacaat ttttttacat tggccaagcc
     4501 tggtgacaca tgcttgtagt cctagctact ctgaaggctg aggttggagg atcgcttgag
     4561 cccaggagtt cagggctgca gagctgggat cataccactg cactccagcc tgtgtgacag
     4621 aggagaacct gtcgctgcaa cacacacaca cacaaaagaa atacaaaaag gtctatatat
     4681 atatttttat ttgcacatac agacatgaca tttaggttta tgtaagcaaa gaaaatgttt
     4741 gggaaaatgt acatctgaca gcgttagcag tgaatatctc tagggcagga gtcagcaaac
     4801 aatggcccct gtgccaaatc cagccctcta ctgttattgg aacccagcca cccgttcgtt
     4861 tacatattat ctattgctgc tttcactcca caagggcaca gttgaatacc atatagctgc
     4921 aatgccaaaa acatttgtat tcatcctttt acagaaaaaa aaattgccaa ctcatgagtt
     4981 aggtggtaga atgaaacaag gaactttcat atttgacatt tggtaattta tattgttgga
     5041 ttatttttaa tggtgagcat cgattgactc aaaaaaggaa gtagttagct aattctgtac
     5101 taaaatgttg aataatagca aaagaactgt ttaacatgaa tattgtgaaa gcttttctat
     5161 aaagatgtta gaagtctcca tggatggaag atgaatcttt tttggtttag agcaatattt
     5221 ctcaaagtgt gatccccaga gttcagcatc agcatctgca tcacctgaga atttgtaaga
     5281 gatgcaaatc cttggcccca ccagagacct aatgaattag aagttctatg gagtccacca
     5341 atccgtgttt tatcaagtga ttctggggta tgctaaaatg caagaaccat agctttagaa
     5401 aaaagtggta cttttcaccc ttggctgcac atgagaatcg tctggggagc attgttaaat
     5461 gccagggccc aggctccacc tagataaatt aagtcagaat tttgtttata gctcccctgg
     5521 tgattctaat gtgcagccaa aatcaagaac cactgcactg caacatctgt tctcagtgat
     5581 ggtgaaagga gagtagcata tcaaaatcac ctgaaattga gggtgatttt taaaattctc
     5641 cttgcttcac attgctgcaa tgtgtcatat ccctcaggtt tgtatctatt tatacacatt
     5701 tatacacaca cacacaccat ttctatggtg atgaaataat accaatttat aattatttgg
     5761 cataattatt tggagattaa tttgatatta gggcaggaaa aaaataatcc aaatcactgc
     5821 aaggacatag taatttatag ggcatataag gacaccgtga caatgttcta aaaataagta
     5881 ctgttaaagc tagcactgtt ttgatcccca tcactgaagt ttgcaacgtt taccttattt
     5941 gtttaatata gtacatttta acagaacatg ttagaaaaga tagattactg ccacggacga
     6001 aaactgggtg gttttctttt gtttgttaaa aaccttatta ccttgacagc ttgagattct
     6061 ggagacatca cctttgtatg tacttattat tattatttta aataatcaac agttgttaaa
     6121 ataaacagtt aaacagttat taaacaatca aaatgcttta atcagaactt gtatgaggag
     6181 tggatttgat gcacaatgta agaggaagct ttggagcctg atgtgaagga ctgaagggga
     6241 tttttttgag tctttgagag gatgtctctg cccatgccca gcctgaagaa gggaacttgt
     6301 aagaatcacc attaattaat atgcattcct accctactta catatggctc tgtcaatacc
     6361 agtggttgag tctgattgtt ttaaccaact gttttgagct tgtcttagag ctcaccccaa
     6421 ttaaaatttg tactcttcaa aagca
//
