LOCUS       XM_047433872            7943 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens RPGRIP1 like (RPGRIP1L), transcript variant
            X6, mRNA.
ACCESSION   XM_047433872
VERSION     XM_047433872.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000016.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7943
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
     gene            1..7943
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /note="RPGRIP1 like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 15 ESTs, 270 long
                     SRA reads, 3 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
     CDS             313..4020
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /codon_start=1
                     /product="protein fantom isoform X6"
                     /protein_id="XP_047289828.1"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
                     /translation="MSGPTDETAGDLPVKDTGLNLFGMGGLQETSTTRTMKSRQAVSR
                     VSREELEDRFLRLHDENILLKQHARKQEDKIKRMATKLIRLVNDKKRYERVGGGPKRL
                     GRDVEMEEMIEQLQEKVHELEKQNETLKNRLISAKQQLQTQGYRQTPYNNVQSRINTG
                     RRKANENAGLQECPRKGIKFQDADVAETPHPMFTKYGNSLLEEARGEIRNLENVIQSQ
                     RGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEMIKLHKQLV
                     EKSNALSAMEGKFIQLQEKQRTLRISHDALMANGDELNMQLKEQRLKCCSLEKQLHSM
                     KFSERRIEELQDRINDLEKERELLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQL
                     ETALKSDLTDKTEILDRLKTERDQNEKLVQENRELQLQYLEQKQQLDELKKRIKLYNQ
                     ENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKDLERSMRELQATHAETVQE
                     LEKTRNMLIMQHKINKDYQMEVEAVTRKMENLQQDYELKVEQYVHLLDIRAARIHKLE
                     AQLKDIAYGTKQYKFKPEIMPDDSVDEFDETIHLERGENLFEIHINKVTFSSEVLQAS
                     GDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEV
                     HQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVPMD
                     QAIRLYRERAKALGYITSNFKGPEHMQSLSQQAPKTAQLSSTDSTDGNLNELHITIRC
                     CNHLQSRASHLQPHPYVVYKFFDFADHDTAIIPSSNDPQFDDHMYFPVPMNMDLDRYL
                     KSESLSFYVFDDSDTQENIYIGKVNVPLISLAHDRCISGIFELTDHQKHPAGTIHVIL
                     KWKFAYLPPSGSITTEDLGNFIRSEEPEVVQRLPPASSVSTLVLAPRPKPRQRLTPVD
                     KKVSFVDIMPHQSDVSQEGSVDEVKENTEKMQQGKDDVSLLSEGQLAEQSLASSEDET
                     EITEDLEPEVEEDMSASDSDDCIIPGPISKNIKQPSEKIRIEIIALSLNDSQVTMDDT
                     IQRLFVECRFYSLPAEETPVSLPKPKSGQWVYYNYSNVIYVDKENNKAKRDILKAILQ
                     KQEMPNRSLRFTVVSDPPEDEQDLECEDIGVAHVDLADMFQEGRDLIEQNIDVFDARA
                     DGEGIGKLRVTVEALHALQSVYKQYRDDLEA"
ORIGIN      
        1 gcccgccacg ctgtcggcgc tatagcaacg gtagctagct gcagggccag tggcacggtg
       61 agtacccggg aggatggggg aggatgaggg tgggtggagg ttgctgaccc tccccactgc
      121 agcgcgggcc ggggtcctag ggtccgctct gccgcctgga gaaggccctg gagttggccc
      181 tggagttctg ctggcgtgaa agcagcccag cccaagacac ctccacatcc tcaggcctga
      241 atcacaggcc gccctttatc cccacgtcca ggaccaattt gaaatgttat atcccagcca
      301 tgaagctagg ccatgtctgg tccaactgat gagactgcag gagacttgcc tgtgaaagat
      361 acaggtctaa acctctttgg aatgggaggg ttacaagaaa cttcaacaac acggacaatg
      421 aagtctcgcc aggcagtgtc acgtgtcagt cgtgaggaac tggaagacag atttttgcgt
      481 ttgcatgatg agaacatttt acttaaacag catgcccgca agcaggagga taaaattaaa
      541 agaatggcca ccaagttaat acggctagtt aatgacaaga aaagatatga gcgggttggt
      601 ggcggcccca agcggctggg acgagatgtg gaaatggaag aaatgattga gcagctgcaa
      661 gagaaagttc atgagcttga aaaacaaaat gaaaccctca aaaacagact gatttcagcc
      721 aaacagcaac ttcaaaccca gggttacagg caaactccat acaataatgt acaatctcgt
      781 attaacactg ggcgtagaaa agcaaatgaa aatgctggtt tacaggaatg ccccaggaaa
      841 ggtataaaat tccaagatgc agatgtagca gaaactccac atcccatgtt tacaaaatat
      901 ggcaacagtt tacttgaaga agccagagga gaaataagaa atttagaaaa cgttattcag
      961 tcacaaagag gccagataga ggagttagag cacttggctg agatcctgaa aactcagttg
     1021 aggagaaaag aaaatgaaat tgagttatct cttcttcagc ttcgagaaca gcaagctaca
     1081 gatcaaaggt caaatattcg ggacaatgta gaaatgatta agcttcataa acagctagta
     1141 gagaaaagca atgctctttc agcaatggaa ggaaaattta ttcagcttca agagaagcaa
     1201 agaactctca gaatcagcca cgatgctttg atggcaaatg gggatgaatt aaacatgcaa
     1261 cttaaagagc agcgtttaaa atgctgcagt cttgagaaac aattacattc tatgaagttt
     1321 tctgaaagaa gaatagaaga gctgcaggat agaattaatg atttagaaaa ggaacgggaa
     1381 cttttaaagg aaaactatga taaactttat gacagtgcct tcagtgctgc ccatgaagag
     1441 caatggaagt taaaggagca acagctgaaa gtgcagattg ctcagctcga gactgccttg
     1501 aagtctgact taacagacaa aactgaaatc cttgacagat taaaaactga aagagatcaa
     1561 aatgaaaaac tcgttcaaga gaatagagaa ctacagttac agtatctgga acaaaagcaa
     1621 caacttgatg aacttaaaaa acgcataaaa ttgtacaacc aggagaatga tattaatgct
     1681 gatgaattga gtgaagctct cctacttata aaggctcaaa aagaacaaaa aaatggagac
     1741 ctttcctttt tagtgaaagt agatagtgaa attaataaag atctagaacg ctctatgaga
     1801 gagctgcaag caactcatgc agaaacggtg caagagctgg aaaagacaag aaacatgcta
     1861 attatgcaac acaaaattaa taaagattat cagatggagg ttgaggcagt gacccgtaag
     1921 atggaaaatt tgcagcaaga ttatgaactc aaagtggaac agtatgttca tcttcttgat
     1981 atcagggctg cacgtatcca taaactagaa gcccaattaa aggatattgc ctatggcacc
     2041 aagcagtaca aatttaaacc agaaatcatg ccagatgact ctgttgatga atttgatgaa
     2101 accatccact tagaacgagg cgaaaatcta tttgaaatcc atatcaacaa agtaaccttt
     2161 tcttctgaag ttttacaggc atctggagat aaagagcctg tcactttctg tacctatgct
     2221 ttctatgatt ttgaactaca gacaactccc gtagtgcgag gccttcatcc cgaatataac
     2281 ttcacttctc aatatcttgt tcatgttaat gacttatttt tgcaatatat tcagaagaat
     2341 actatcaccc ttgaggtcca ccaggcttat agcacagaat atgaaacaat tgcagcatgt
     2401 caattaaaat ttcacgaaat tcttgaaaaa agcggccgaa tattttgtac agcaagtttg
     2461 attggaacaa aaggagacat cccaaatttt ggcacagtgg aatactggtt ccgattaaga
     2521 gttcccatgg atcaagcaat tcgactttat cgagaaaggg caaaggcttt ggggtatata
     2581 acatcaaatt ttaaggggcc agagcatatg cagtcgttaa gtcagcaagc acccaaaact
     2641 gctcaactca gttctacaga ttccacagat ggcaacttaa atgaacttca cattacaata
     2701 agatgttgca accacctgca gtcccgagca agccacctgc agccacaccc atatgttgtg
     2761 tacaagtttt ttgattttgc agaccatgat acagctatca ttcccagtag caatgatcca
     2821 cagtttgatg atcatatgta tttcccagtg ccaatgaata tggacttgga tcgatacctt
     2881 aagtcagagt ctctgagttt ttatgttttt gatgatagtg atacccagga gaatatttac
     2941 ataggaaaag tcaatgtgcc tctgatttcg ttggcacatg acaggtgtat ctcaggaata
     3001 tttgagttaa cagaccatca aaagcatcct gctggcacca tccatgttat attgaaatgg
     3061 aaatttgctt accttccacc aagtggatca ataacaactg aagacttagg aaatttcatt
     3121 cgcagcgaag agccagaagt tgttcaaaga cttcctccag catcctctgt tagcacacta
     3181 gttttagcac caagacctaa accaagacaa cgtttaacac ctgtagataa gaaggtatct
     3241 ttcgtggata tcatgccaca tcagagtgat gtttcacaag aaggcagtgt agatgaggta
     3301 aaagagaata ctgagaaaat gcagcaagga aaagatgatg tgtctttact atctgaaggt
     3361 cagcttgcag aacaaagctt ggcatcttct gaagatgaaa cagaaataac agaggacttg
     3421 gaaccagaag ttgaagagga catgtcagct tctgacagtg atgactgtat tattccaggt
     3481 cctatctcca agaatatcaa acagccatca gaaaaaattc ggattgagat catagctcta
     3541 agccttaatg attctcaagt aaccatggat gacactatcc aacggctgtt tgttgagtgt
     3601 cgattctaca gtcttcctgc tgaagagaca cccgtgtcac ttccaaaacc caagagtggg
     3661 cagtgggtct actataacta tagcaatgtg atctacgtgg ataaagaaaa caacaaagca
     3721 aagagagaca tcttaaaagc tatactacaa aaacaagaga tgcctaatag aagccttcgc
     3781 ttcaccgtgg tcagtgaccc tccagaggac gagcaggacc tggagtgtga ggacattggc
     3841 gtggctcacg tcgaccttgc cgacatgttt caggaaggga gggacctcat tgagcaaaat
     3901 atcgatgttt ttgatgcacg agcagatggt gaaggtattg gcaagctcag ggtaacagtc
     3961 gaagctctcc atgccctcca gtctgtctac aagcaataca gagatgactt ggaggcttga
     4021 aagcaaatgc tccagaggca tctcctactc ctcagtaaat gctcacatga aagttcctac
     4081 atgagatttt tgtaattact ctggtgtata taatctataa ttcatgggaa gctgggagcg
     4141 gggagacctg ggtttgaagt gttgaagttt tgtatacttt ttcatttgtt tatttctcta
     4201 ttccctcctt ctcataactg ccacccctca ggacttaagt tctccataat gggcagtacc
     4261 ttctcaataa tttataccta cgtgatagcg tgagaaagtc tatttgcatt ttcaacattt
     4321 tcttaggaag aaccgaaatg caattcccat ttttattttt aataagcaaa agcataaatc
     4381 ttagaaaacc tatgaaaaag aaatactttt atgttatccc taatcgtccc actaaatgga
     4441 atgcctatga ttagcttcat taagagtttt atactgtgaa gattttatta gaagcaatat
     4501 atgaaaatta cttggattaa tgtgttaatc ttcctcttta aaatgctaat atccatttta
     4561 tgcacattaa agctcagtat gcattttctt tgatgcatgc agtttctatc aattaaatat
     4621 aaagaatgaa acttagcacc aacttattca atgactgcaa gttttttgtc tttctttctt
     4681 aaaagttcat tctatttgta ttattttcat acatttgtaa tggtgaccca gggatgtata
     4741 tataaaaagg agatagttat atagatagat gtgaaattta cacgttgaaa acttagtata
     4801 tgacacagaa agaaattatg aaaagtataa ctcaaattct gatatgctta gttagacgtg
     4861 aaaggagtat ctttttatca ttttttaaat ttacatcaag ccagtacagt gccagggtgt
     4921 atctgggtaa ccagatcctc gaaaagcagc tctgaaagtt aattttctag cttttaccca
     4981 atctcactga aggatttaat tgatattttt aatggagctg tgaatcaatg ctgcaaagga
     5041 attgtctcta gaggtctagg atataatgca tttcattttt taatttactt ttttatttgt
     5101 cattttcttc aaaggatttt tataggctgt gggttttcac tgtttgcaaa caggctatgt
     5161 tccttcttaa gcatatgtaa agtattcagg gagataagta atttattaaa atctacctaa
     5221 tttgccgtga tatattaaat ctctgcttca gtgatcacag accatttcat ttagagaatt
     5281 aggcattccc tctttgtgtg attaaagctc tggaaaatga gttctttgct cctatttgtg
     5341 aacattcaaa gcctgctaat ggcaagaaga tggaatagat tatgagacaa ttcattacag
     5401 ttcaatagaa aaaaaaagca gctataatgc aaaaatgcaa gtatgaatat ctgcatatag
     5461 tttgaaccat ctgtgctcta atggcttcaa taatgactct cgtctttaga aggctttgaa
     5521 atgacatccg tacaatatta atttgttgat gtacattgtg ggaccagtag agtatgatct
     5581 gaccacagaa atctataaat tctgtctata ccactgggcc tccctgtcct ggggcctgcc
     5641 atctccgaga agaatcttgc tctcatccaa ctctgcaaat cttcataaca actcgttcct
     5701 ctggaacctt ctggagacca caaacatctg cagactaaac ctctccagtc ctagtaaaca
     5761 accacatgtt tgttgtcact tcggctggct ctgagctcat ttttttggcc cctttttcta
     5821 gctttctttg gctttatgca gttacagtgt cattaaggcc cataatattc cctgcagtaa
     5881 tttaaaacag ccagattata ccctgggatt aactgagtgg tttttgagac atttattgtg
     5941 gtattctccc aggaggtttg tattattgtt gtaaaatgtt acatcccaaa ctaaataacc
     6001 cttctgcagg gagaagaacc agattgcact gacttcttag gatcattaag tggaaaggaa
     6061 aagtttttct tagaaaactt atgggaccca gtcacctgta tggaatgtat atctcagaca
     6121 agatgagaga aacagccatg tttctgtcac attgtttact gtcatattaa agatatctag
     6181 ttttaaaata ttcagtttca aactattgcg aattttcaca acactcattt tcatagctaa
     6241 ttgctgctga cacattttga agtggcgagg tagtattgaa cgctgtcatg tggatacttc
     6301 agttgggttt cataatctgt ttgagaattt tgtttgtttt atcttgtggt aactggaggc
     6361 cattgaaaag cttaccacct tttgggttaa agagcagtgg atttctcttg gtgagccaaa
     6421 ctggatccat tgaagagggc ttggcgtcag gggccaccag cagtggcctt gccacacaga
     6481 taccagctta aggtgttgct ggtgtgaaca tacacttctt ggtgtaacta gaccagtgca
     6541 cgcagcactt ttttgggctg taatgctttt agtttggaaa tacaaataga gatgtgatgt
     6601 ggtatgtggg agagtgtatt ttacatgtat ttttgcctac tgtagtagaa atgtcaaatt
     6661 cccagccact gtcatgaaaa gcagttgaca aaaataagtt ttatggttta cagtgtggtt
     6721 tacgtaaaga acatttctct tcactctcag tttcaccatg ttttctaaat tatcatggtt
     6781 tactgccatt taacttaaat tagttttttt aaaaatacat aaagaatatg tttaatcaaa
     6841 taaagaaagg ccacactgaa attctgctgt tcctgccatt cattcgttac cacaaaacac
     6901 aaataatttc tatgtgttat gaagacatgt gggctgagaa gtggtcatgt gattggagag
     6961 gttttgcgtg cactcatgtt cccacaacaa aacataaatt attttagtaa tctgacatca
     7021 agagctgtga aaatgaaaac cagttcttac acatgttcta acaagaatct gattaacatt
     7081 tttgtggata tggaaaattt tttttttagt caaactggca ctattgctga atgtagaatg
     7141 atttccttat gcactagata gaaaaatgtg aatcatgtct gtgaacaaat atgagaataa
     7201 aatgtcatct ttgtgtagga caaaacaacc aggagagaga ttttgggata aaaattatca
     7261 agtgattgac aatatcagga tgataattca tccccaacta tcagagtaca ttttaataag
     7321 tcactcatgc ctgaaggcct ctgactacct taacaaagaa aaactaaacc cgtgatttat
     7381 tagagattgg gcaacatgcc taattaaatc catgaatggg aacaaacaga tttacatccc
     7441 ctttgttcag aacaaaaaca acctctaggt caaccagaaa gctagaaaat atcaaagcaa
     7501 gagaaacaag tgtttttaaa actaaaaata tagaattaga aaacatctcc tcatcctaat
     7561 ctcttttatc ttacaaggta gaattttcac ttccatttca aagtgccacc agtggactgc
     7621 accctccagc ctgaccgcct ggaaaattgg acccatatta ctggtattct tatacctttt
     7681 gttcttgccc tttcattttc catatgacat tcactaatat atcaagctat gtttttcctt
     7741 caggcttttg gaagtgcaat ctggtactct tagacttcga tcatgacctg ttttctgagg
     7801 tagatgctgt ttgacttttc tgctttttgc ctcttctcac tctattgaga gtcacctttt
     7861 tcatccctag aacagcatta cctctgtctt cactgtgcac catttgtttt ctttttaaat
     7921 aaaatttaac atcttgattt tta
//
