LOCUS       XM_047433869            8195 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens RPGRIP1 like (RPGRIP1L), transcript variant
            X1, mRNA.
ACCESSION   XM_047433869
VERSION     XM_047433869.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000016.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8195
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
     gene            1..8195
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /note="RPGRIP1 like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 13 ESTs, 216 long SRA
                     reads, 1 Protein, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
     CDS             313..4272
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /codon_start=1
                     /product="protein fantom isoform X1"
                     /protein_id="XP_047289825.1"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
                     /translation="MSGPTDETAGDLPVKDTGLNLFGMGGLQETSTTRTMKSRQAVSR
                     VSREELEDRFLRLHDENILLKQHARKQEDKIKRMATKLIRLVNDKKRYERVGGGPKRL
                     GRDVEMEEMIEQLQEKVHELEKQNETLKNRLISAKQQLQTQGYRQTPYNNVQSRINTG
                     RRKANENAGLQECPRKGIKFQDADVAETPHPMFTKYGNSLLEEARGEIRNLENVIQSQ
                     RGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEMIKLHKQLV
                     EKSNALSAMEGKFIQLQEKQRTLRISHDALMANGDELNMQLKEQRLKCCSLEKQLHSM
                     KFSERRIEELQDRINDLEKERELLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQL
                     ETALKSDLTDKTEILDRLKTERGALINQNEKLVQENRELQLQYLEQKQQLDELKKRIK
                     LYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKDLERSMRELQATHAE
                     TVQELEKTRNMLIMQHKINKDYQMEVEAVTRKMENLQQDYELKVEQYVHLLDIRAARI
                     HKLEAQLKDIAYGTKQYKFKPEIMPDDSVDEFDETIHLERGENLFEIHINKVTFSSEV
                     LQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTI
                     TLEVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR
                     VPMDQAIRLYRERAKALGYITSNFKGPEHMQSLSQQAPKTAQLSSTDSTDGNLNELHI
                     TIRCCNHLQSRASHLQPHPYVVYKFFDFADHDTAIIPSSNDPQFDDHMYFPVPMNMDL
                     DRYLKSESLSFYVFDDSDTQENIYIGKVNVPLISLAHDRCISGIFELTDHQKHPAGTI
                     HVILKWKFAYLPPSGSITTEDLGNFIRSEEPEVVQRLPPASSVSTLVLAPRPKPRQRL
                     TPVDKKVSFVDIMPHQSDETSPPPEDRKEISPEVEHIPEIEINMLTVPHVPKVSQEGS
                     VDEVKENTEKMQQGKDDVSLLSEGQLAEQSLASSEDETEITEDLEPEVEEDMSASDSD
                     DCIIPGPISKNIKQSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQVDGITGACHH
                     TQPSEKIRIEIIALSLNDSQVTMDDTIQRLFVECRFYSLPAEETPVSLPKPKSGQWVY
                     YNYSNVIYVDKENNKAKRDILKAILQKQEMPNRSLRFTVVSDPPEDEQDLECEDIGVA
                     HVDLADMFQEGRDLIEQNIDVFDARADGEGIGKLRVTVEALHALQSVYKQYRDDLEA"
ORIGIN      
        1 gcccgccacg ctgtcggcgc tatagcaacg gtagctagct gcagggccag tggcacggtg
       61 agtacccggg aggatggggg aggatgaggg tgggtggagg ttgctgaccc tccccactgc
      121 agcgcgggcc ggggtcctag ggtccgctct gccgcctgga gaaggccctg gagttggccc
      181 tggagttctg ctggcgtgaa agcagcccag cccaagacac ctccacatcc tcaggcctga
      241 atcacaggcc gccctttatc cccacgtcca ggaccaattt gaaatgttat atcccagcca
      301 tgaagctagg ccatgtctgg tccaactgat gagactgcag gagacttgcc tgtgaaagat
      361 acaggtctaa acctctttgg aatgggaggg ttacaagaaa cttcaacaac acggacaatg
      421 aagtctcgcc aggcagtgtc acgtgtcagt cgtgaggaac tggaagacag atttttgcgt
      481 ttgcatgatg agaacatttt acttaaacag catgcccgca agcaggagga taaaattaaa
      541 agaatggcca ccaagttaat acggctagtt aatgacaaga aaagatatga gcgggttggt
      601 ggcggcccca agcggctggg acgagatgtg gaaatggaag aaatgattga gcagctgcaa
      661 gagaaagttc atgagcttga aaaacaaaat gaaaccctca aaaacagact gatttcagcc
      721 aaacagcaac ttcaaaccca gggttacagg caaactccat acaataatgt acaatctcgt
      781 attaacactg ggcgtagaaa agcaaatgaa aatgctggtt tacaggaatg ccccaggaaa
      841 ggtataaaat tccaagatgc agatgtagca gaaactccac atcccatgtt tacaaaatat
      901 ggcaacagtt tacttgaaga agccagagga gaaataagaa atttagaaaa cgttattcag
      961 tcacaaagag gccagataga ggagttagag cacttggctg agatcctgaa aactcagttg
     1021 aggagaaaag aaaatgaaat tgagttatct cttcttcagc ttcgagaaca gcaagctaca
     1081 gatcaaaggt caaatattcg ggacaatgta gaaatgatta agcttcataa acagctagta
     1141 gagaaaagca atgctctttc agcaatggaa ggaaaattta ttcagcttca agagaagcaa
     1201 agaactctca gaatcagcca cgatgctttg atggcaaatg gggatgaatt aaacatgcaa
     1261 cttaaagagc agcgtttaaa atgctgcagt cttgagaaac aattacattc tatgaagttt
     1321 tctgaaagaa gaatagaaga gctgcaggat agaattaatg atttagaaaa ggaacgggaa
     1381 cttttaaagg aaaactatga taaactttat gacagtgcct tcagtgctgc ccatgaagag
     1441 caatggaagt taaaggagca acagctgaaa gtgcagattg ctcagctcga gactgccttg
     1501 aagtctgact taacagacaa aactgaaatc cttgacagat taaaaactga aagaggagcc
     1561 ttaataaatc aaaatgaaaa actcgttcaa gagaatagag aactacagtt acagtatctg
     1621 gaacaaaagc aacaacttga tgaacttaaa aaacgcataa aattgtacaa ccaggagaat
     1681 gatattaatg ctgatgaatt gagtgaagct ctcctactta taaaggctca aaaagaacaa
     1741 aaaaatggag acctttcctt tttagtgaaa gtagatagtg aaattaataa agatctagaa
     1801 cgctctatga gagagctgca agcaactcat gcagaaacgg tgcaagagct ggaaaagaca
     1861 agaaacatgc taattatgca acacaaaatt aataaagatt atcagatgga ggttgaggca
     1921 gtgacccgta agatggaaaa tttgcagcaa gattatgaac tcaaagtgga acagtatgtt
     1981 catcttcttg atatcagggc tgcacgtatc cataaactag aagcccaatt aaaggatatt
     2041 gcctatggca ccaagcagta caaatttaaa ccagaaatca tgccagatga ctctgttgat
     2101 gaatttgatg aaaccatcca cttagaacga ggcgaaaatc tatttgaaat ccatatcaac
     2161 aaagtaacct tttcttctga agttttacag gcatctggag ataaagagcc tgtcactttc
     2221 tgtacctatg ctttctatga ttttgaacta cagacaactc ccgtagtgcg aggccttcat
     2281 cccgaatata acttcacttc tcaatatctt gttcatgtta atgacttatt tttgcaatat
     2341 attcagaaga atactatcac ccttgaggtc caccaggctt atagcacaga atatgaaaca
     2401 attgcagcat gtcaattaaa atttcacgaa attcttgaaa aaagcggccg aatattttgt
     2461 acagcaagtt tgattggaac aaaaggagac atcccaaatt ttggcacagt ggaatactgg
     2521 ttccgattaa gagttcccat ggatcaagca attcgacttt atcgagaaag ggcaaaggct
     2581 ttggggtata taacatcaaa ttttaagggg ccagagcata tgcagtcgtt aagtcagcaa
     2641 gcacccaaaa ctgctcaact cagttctaca gattccacag atggcaactt aaatgaactt
     2701 cacattacaa taagatgttg caaccacctg cagtcccgag caagccacct gcagccacac
     2761 ccatatgttg tgtacaagtt ttttgatttt gcagaccatg atacagctat cattcccagt
     2821 agcaatgatc cacagtttga tgatcatatg tatttcccag tgccaatgaa tatggacttg
     2881 gatcgatacc ttaagtcaga gtctctgagt ttttatgttt ttgatgatag tgatacccag
     2941 gagaatattt acataggaaa agtcaatgtg cctctgattt cgttggcaca tgacaggtgt
     3001 atctcaggaa tatttgagtt aacagaccat caaaagcatc ctgctggcac catccatgtt
     3061 atattgaaat ggaaatttgc ttaccttcca ccaagtggat caataacaac tgaagactta
     3121 ggaaatttca ttcgcagcga agagccagaa gttgttcaaa gacttcctcc agcatcctct
     3181 gttagcacac tagttttagc accaagacct aaaccaagac aacgtttaac acctgtagat
     3241 aagaaggtat ctttcgtgga tatcatgcca catcagagtg atgagacttc tcctcctcct
     3301 gaagatagga aggaaatttc accagaggta gagcatatac cagaaataga aattaatatg
     3361 ctgactgttc cacatgttcc caaggtttca caagaaggca gtgtagatga ggtaaaagag
     3421 aatactgaga aaatgcagca aggaaaagat gatgtgtctt tactatctga aggtcagctt
     3481 gcagaacaaa gcttggcatc ttctgaagat gaaacagaaa taacagagga cttggaacca
     3541 gaagttgaag aggacatgtc agcttctgac agtgatgact gtattattcc aggtcctatc
     3601 tccaagaata tcaaacagag tctcgcattg tctcccgggc tggggtgcag tagcgcgatc
     3661 tcagctcact gcaacttccg cctcccgggt tccagcgatt ttcctgcctc agcctcccaa
     3721 gtagatggga ttacaggtgc ctgccaccac acccagccat cagaaaaaat tcggattgag
     3781 atcatagctc taagccttaa tgattctcaa gtaaccatgg atgacactat ccaacggctg
     3841 tttgttgagt gtcgattcta cagtcttcct gctgaagaga cacccgtgtc acttccaaaa
     3901 cccaagagtg ggcagtgggt ctactataac tatagcaatg tgatctacgt ggataaagaa
     3961 aacaacaaag caaagagaga catcttaaaa gctatactac aaaaacaaga gatgcctaat
     4021 agaagccttc gcttcaccgt ggtcagtgac cctccagagg acgagcagga cctggagtgt
     4081 gaggacattg gcgtggctca cgtcgacctt gccgacatgt ttcaggaagg gagggacctc
     4141 attgagcaaa atatcgatgt ttttgatgca cgagcagatg gtgaaggtat tggcaagctc
     4201 agggtaacag tcgaagctct ccatgccctc cagtctgtct acaagcaata cagagatgac
     4261 ttggaggctt gaaagcaaat gctccagagg catctcctac tcctcagtaa atgctcacat
     4321 gaaagttcct acatgagatt tttgtaatta ctctggtgta tataatctat aattcatggg
     4381 aagctgggag cggggagacc tgggtttgaa gtgttgaagt tttgtatact ttttcatttg
     4441 tttatttctc tattccctcc ttctcataac tgccacccct caggacttaa gttctccata
     4501 atgggcagta ccttctcaat aatttatacc tacgtgatag cgtgagaaag tctatttgca
     4561 ttttcaacat tttcttagga agaaccgaaa tgcaattccc atttttattt ttaataagca
     4621 aaagcataaa tcttagaaaa cctatgaaaa agaaatactt ttatgttatc cctaatcgtc
     4681 ccactaaatg gaatgcctat gattagcttc attaagagtt ttatactgtg aagattttat
     4741 tagaagcaat atatgaaaat tacttggatt aatgtgttaa tcttcctctt taaaatgcta
     4801 atatccattt tatgcacatt aaagctcagt atgcattttc tttgatgcat gcagtttcta
     4861 tcaattaaat ataaagaatg aaacttagca ccaacttatt caatgactgc aagttttttg
     4921 tctttctttc ttaaaagttc attctatttg tattattttc atacatttgt aatggtgacc
     4981 cagggatgta tatataaaaa ggagatagtt atatagatag atgtgaaatt tacacgttga
     5041 aaacttagta tatgacacag aaagaaatta tgaaaagtat aactcaaatt ctgatatgct
     5101 tagttagacg tgaaaggagt atctttttat cattttttaa atttacatca agccagtaca
     5161 gtgccagggt gtatctgggt aaccagatcc tcgaaaagca gctctgaaag ttaattttct
     5221 agcttttacc caatctcact gaaggattta attgatattt ttaatggagc tgtgaatcaa
     5281 tgctgcaaag gaattgtctc tagaggtcta ggatataatg catttcattt tttaatttac
     5341 ttttttattt gtcattttct tcaaaggatt tttataggct gtgggttttc actgtttgca
     5401 aacaggctat gttccttctt aagcatatgt aaagtattca gggagataag taatttatta
     5461 aaatctacct aatttgccgt gatatattaa atctctgctt cagtgatcac agaccatttc
     5521 atttagagaa ttaggcattc cctctttgtg tgattaaagc tctggaaaat gagttctttg
     5581 ctcctatttg tgaacattca aagcctgcta atggcaagaa gatggaatag attatgagac
     5641 aattcattac agttcaatag aaaaaaaaag cagctataat gcaaaaatgc aagtatgaat
     5701 atctgcatat agtttgaacc atctgtgctc taatggcttc aataatgact ctcgtcttta
     5761 gaaggctttg aaatgacatc cgtacaatat taatttgttg atgtacattg tgggaccagt
     5821 agagtatgat ctgaccacag aaatctataa attctgtcta taccactggg cctccctgtc
     5881 ctggggcctg ccatctccga gaagaatctt gctctcatcc aactctgcaa atcttcataa
     5941 caactcgttc ctctggaacc ttctggagac cacaaacatc tgcagactaa acctctccag
     6001 tcctagtaaa caaccacatg tttgttgtca cttcggctgg ctctgagctc atttttttgg
     6061 cccctttttc tagctttctt tggctttatg cagttacagt gtcattaagg cccataatat
     6121 tccctgcagt aatttaaaac agccagatta taccctggga ttaactgagt ggtttttgag
     6181 acatttattg tggtattctc ccaggaggtt tgtattattg ttgtaaaatg ttacatccca
     6241 aactaaataa cccttctgca gggagaagaa ccagattgca ctgacttctt aggatcatta
     6301 agtggaaagg aaaagttttt cttagaaaac ttatgggacc cagtcacctg tatggaatgt
     6361 atatctcaga caagatgaga gaaacagcca tgtttctgtc acattgttta ctgtcatatt
     6421 aaagatatct agttttaaaa tattcagttt caaactattg cgaattttca caacactcat
     6481 tttcatagct aattgctgct gacacatttt gaagtggcga ggtagtattg aacgctgtca
     6541 tgtggatact tcagttgggt ttcataatct gtttgagaat tttgtttgtt ttatcttgtg
     6601 gtaactggag gccattgaaa agcttaccac cttttgggtt aaagagcagt ggatttctct
     6661 tggtgagcca aactggatcc attgaagagg gcttggcgtc aggggccacc agcagtggcc
     6721 ttgccacaca gataccagct taaggtgttg ctggtgtgaa catacacttc ttggtgtaac
     6781 tagaccagtg cacgcagcac ttttttgggc tgtaatgctt ttagtttgga aatacaaata
     6841 gagatgtgat gtggtatgtg ggagagtgta ttttacatgt atttttgcct actgtagtag
     6901 aaatgtcaaa ttcccagcca ctgtcatgaa aagcagttga caaaaataag ttttatggtt
     6961 tacagtgtgg tttacgtaaa gaacatttct cttcactctc agtttcacca tgttttctaa
     7021 attatcatgg tttactgcca tttaacttaa attagttttt ttaaaaatac ataaagaata
     7081 tgtttaatca aataaagaaa ggccacactg aaattctgct gttcctgcca ttcattcgtt
     7141 accacaaaac acaaataatt tctatgtgtt atgaagacat gtgggctgag aagtggtcat
     7201 gtgattggag aggttttgcg tgcactcatg ttcccacaac aaaacataaa ttattttagt
     7261 aatctgacat caagagctgt gaaaatgaaa accagttctt acacatgttc taacaagaat
     7321 ctgattaaca tttttgtgga tatggaaaat ttttttttta gtcaaactgg cactattgct
     7381 gaatgtagaa tgatttcctt atgcactaga tagaaaaatg tgaatcatgt ctgtgaacaa
     7441 atatgagaat aaaatgtcat ctttgtgtag gacaaaacaa ccaggagaga gattttggga
     7501 taaaaattat caagtgattg acaatatcag gatgataatt catccccaac tatcagagta
     7561 cattttaata agtcactcat gcctgaaggc ctctgactac cttaacaaag aaaaactaaa
     7621 cccgtgattt attagagatt gggcaacatg cctaattaaa tccatgaatg ggaacaaaca
     7681 gatttacatc ccctttgttc agaacaaaaa caacctctag gtcaaccaga aagctagaaa
     7741 atatcaaagc aagagaaaca agtgttttta aaactaaaaa tatagaatta gaaaacatct
     7801 cctcatccta atctctttta tcttacaagg tagaattttc acttccattt caaagtgcca
     7861 ccagtggact gcaccctcca gcctgaccgc ctggaaaatt ggacccatat tactggtatt
     7921 cttatacctt ttgttcttgc cctttcattt tccatatgac attcactaat atatcaagct
     7981 atgtttttcc ttcaggcttt tggaagtgca atctggtact cttagacttc gatcatgacc
     8041 tgttttctga ggtagatgct gtttgacttt tctgcttttt gcctcttctc actctattga
     8101 gagtcacctt tttcatccct agaacagcat tacctctgtc ttcactgtgc accatttgtt
     8161 ttctttttaa ataaaattta acatcttgat tttta
//
