LOCUS       XM_017023098            6876 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens RPGRIP1 like (RPGRIP1L), transcript variant
            X24, mRNA.
ACCESSION   XM_017023098
VERSION     XM_017023098.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000016.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017023098.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6876
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
     gene            1..6876
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /note="RPGRIP1 like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 ESTs, 159 long SRA
                     reads, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments, including 6 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
     CDS             761..2953
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /codon_start=1
                     /product="protein fantom isoform X20"
                     /protein_id="XP_016878587.1"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
                     /translation="MPDDSVDEFDETIHLERGENLFEIHINKVTFSSEVLQASGDKEP
                     VTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYS
                     TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVPMDQAIRL
                     YRERAKALGYITSNFKGPEHMQSLSQQAPKTAQLSSTDSTDGNLNELHITIRCCNHLQ
                     SRASHLQPHPYVVYKFFDFADHDTAIIPSSNDPQFDDHMYFPVPMNMDLDRYLKSESL
                     SFYVFDDSDTQENIYIGKVNVPLISLAHDRCISGIFELTDHQKHPAGTIHVILKWKFA
                     YLPPSGSITTEDLGNFIRSEEPEVVQRLPPASSVSTLVLAPRPKPRQRLTPVDKKVSF
                     VDIMPHQSDETSPPPEDRKEISPEVEHIPEIEINMLTVPHVPKVSQEGSVDEVKENTE
                     KMQQGKDDVSLLSEGQLAEQSLASSEDETEITEDLEPEVEEDMSASDSDDCIIPGPIS
                     KNIKQSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQVDGITGACHHTQPSEKIRI
                     EIIALSLNDSQVTMDDTIQRLFVECRFYSLPAEETPVSLPKPKSGQWVYYNYSNVIYV
                     DKENNKAKRDILKAILQKQEMPNRSLRFTVVSDPPEDEQDLECEDIGVAHVDLADMFQ
                     EGRDLIEQNIDVFDARADGEGIGKLRVTVEALHALQSVYKQYRDDLEA"
ORIGIN      
        1 gaatctgtct caaaacatac aaaaaaacaa gacagtatga tacattctgt tttgaatatg
       61 ttgtgtggga tatctagata catagagggt taaacaaaac tttagaaata taggaatgga
      121 gttgagaaga taaatatgaa tttaaaatag taatatggaa gcctttagca tattaataat
      181 gacaaaagtc ataaaagttg atgagatcac tcatgagaat atgtagacta agaaaataat
      241 taaaaacaga agcccagaaa actagcagac gaagagaaat cccaaaagaa tgagaagaag
      301 gataggagga gaagcagaga agatgatgac atacatggaa gtccaggtta gacagagttc
      361 actaatggga gattgtcatc agtgtcaaat gtagtaaaga aatcaagtaa tacaaggacc
      421 agcgttcatt gcgtctagca attaattgat tattgttggc tttttctgga gcagtttcac
      481 agaaaagcaa ggcagatatt cacgttggtg atatttggtt ggcctctgta tataacggtg
      541 aaaccatcat catgatcagg ataataaact tatccatcac cccacgaaga agaaaagtat
      601 aaatcttaat aagttaaagg aaaggaggca gcagaaagag agactgactt tataggagtg
      661 aagacaatgg gtggagcaga gacagggaag caggtgaaat ccagcccaat taaaggatat
      721 tgcctatggc accaagcagt acaaatttaa accagaaatc atgccagatg actctgttga
      781 tgaatttgat gaaaccatcc acttagaacg aggcgaaaat ctatttgaaa tccatatcaa
      841 caaagtaacc ttttcttctg aagttttaca ggcatctgga gataaagagc ctgtcacttt
      901 ctgtacctat gctttctatg attttgaact acagacaact cccgtagtgc gaggccttca
      961 tcccgaatat aacttcactt ctcaatatct tgttcatgtt aatgacttat ttttgcaata
     1021 tattcagaag aatactatca cccttgaggt ccaccaggct tatagcacag aatatgaaac
     1081 aattgcagca tgtcaattaa aatttcacga aattcttgaa aaaagcggcc gaatattttg
     1141 tacagcaagt ttgattggaa caaaaggaga catcccaaat tttggcacag tggaatactg
     1201 gttccgatta agagttccca tggatcaagc aattcgactt tatcgagaaa gggcaaaggc
     1261 tttggggtat ataacatcaa attttaaggg gccagagcat atgcagtcgt taagtcagca
     1321 agcacccaaa actgctcaac tcagttctac agattccaca gatggcaact taaatgaact
     1381 tcacattaca ataagatgtt gcaaccacct gcagtcccga gcaagccacc tgcagccaca
     1441 cccatatgtt gtgtacaagt tttttgattt tgcagaccat gatacagcta tcattcccag
     1501 tagcaatgat ccacagtttg atgatcatat gtatttccca gtgccaatga atatggactt
     1561 ggatcgatac cttaagtcag agtctctgag tttttatgtt tttgatgata gtgataccca
     1621 ggagaatatt tacataggaa aagtcaatgt gcctctgatt tcgttggcac atgacaggtg
     1681 tatctcagga atatttgagt taacagacca tcaaaagcat cctgctggca ccatccatgt
     1741 tatattgaaa tggaaatttg cttaccttcc accaagtgga tcaataacaa ctgaagactt
     1801 aggaaatttc attcgcagcg aagagccaga agttgttcaa agacttcctc cagcatcctc
     1861 tgttagcaca ctagttttag caccaagacc taaaccaaga caacgtttaa cacctgtaga
     1921 taagaaggta tctttcgtgg atatcatgcc acatcagagt gatgagactt ctcctcctcc
     1981 tgaagatagg aaggaaattt caccagaggt agagcatata ccagaaatag aaattaatat
     2041 gctgactgtt ccacatgttc ccaaggtttc acaagaaggc agtgtagatg aggtaaaaga
     2101 gaatactgag aaaatgcagc aaggaaaaga tgatgtgtct ttactatctg aaggtcagct
     2161 tgcagaacaa agcttggcat cttctgaaga tgaaacagaa ataacagagg acttggaacc
     2221 agaagttgaa gaggacatgt cagcttctga cagtgatgac tgtattattc caggtcctat
     2281 ctccaagaat atcaaacaga gtctcgcatt gtctcccggg ctggggtgca gtagcgcgat
     2341 ctcagctcac tgcaacttcc gcctcccggg ttccagcgat tttcctgcct cagcctccca
     2401 agtagatggg attacaggtg cctgccacca cacccagcca tcagaaaaaa ttcggattga
     2461 gatcatagct ctaagcctta atgattctca agtaaccatg gatgacacta tccaacggct
     2521 gtttgttgag tgtcgattct acagtcttcc tgctgaagag acacccgtgt cacttccaaa
     2581 acccaagagt gggcagtggg tctactataa ctatagcaat gtgatctacg tggataaaga
     2641 aaacaacaaa gcaaagagag acatcttaaa agctatacta caaaaacaag agatgcctaa
     2701 tagaagcctt cgcttcaccg tggtcagtga ccctccagag gacgagcagg acctggagtg
     2761 tgaggacatt ggcgtggctc acgtcgacct tgccgacatg tttcaggaag ggagggacct
     2821 cattgagcaa aatatcgatg tttttgatgc acgagcagat ggtgaaggta ttggcaagct
     2881 cagggtaaca gtcgaagctc tccatgccct ccagtctgtc tacaagcaat acagagatga
     2941 cttggaggct tgaaagcaaa tgctccagag gcatctccta ctcctcagta aatgctcaca
     3001 tgaaagttcc tacatgagat ttttgtaatt actctggtgt atataatcta taattcatgg
     3061 gaagctggga gcggggagac ctgggtttga agtgttgaag ttttgtatac tttttcattt
     3121 gtttatttct ctattccctc cttctcataa ctgccacccc tcaggactta agttctccat
     3181 aatgggcagt accttctcaa taatttatac ctacgtgata gcgtgagaaa gtctatttgc
     3241 attttcaaca ttttcttagg aagaaccgaa atgcaattcc catttttatt tttaataagc
     3301 aaaagcataa atcttagaaa acctatgaaa aagaaatact tttatgttat ccctaatcgt
     3361 cccactaaat ggaatgccta tgattagctt cattaagagt tttatactgt gaagatttta
     3421 ttagaagcaa tatatgaaaa ttacttggat taatgtgtta atcttcctct ttaaaatgct
     3481 aatatccatt ttatgcacat taaagctcag tatgcatttt ctttgatgca tgcagtttct
     3541 atcaattaaa tataaagaat gaaacttagc accaacttat tcaatgactg caagtttttt
     3601 gtctttcttt cttaaaagtt cattctattt gtattatttt catacatttg taatggtgac
     3661 ccagggatgt atatataaaa aggagatagt tatatagata gatgtgaaat ttacacgttg
     3721 aaaacttagt atatgacaca gaaagaaatt atgaaaagta taactcaaat tctgatatgc
     3781 ttagttagac gtgaaaggag tatcttttta tcatttttta aatttacatc aagccagtac
     3841 agtgccaggg tgtatctggg taaccagatc ctcgaaaagc agctctgaaa gttaattttc
     3901 tagcttttac ccaatctcac tgaaggattt aattgatatt tttaatggag ctgtgaatca
     3961 atgctgcaaa ggaattgtct ctagaggtct aggatataat gcatttcatt ttttaattta
     4021 cttttttatt tgtcattttc ttcaaaggat ttttataggc tgtgggtttt cactgtttgc
     4081 aaacaggcta tgttccttct taagcatatg taaagtattc agggagataa gtaatttatt
     4141 aaaatctacc taatttgccg tgatatatta aatctctgct tcagtgatca cagaccattt
     4201 catttagaga attaggcatt ccctctttgt gtgattaaag ctctggaaaa tgagttcttt
     4261 gctcctattt gtgaacattc aaagcctgct aatggcaaga agatggaata gattatgaga
     4321 caattcatta cagttcaata gaaaaaaaaa gcagctataa tgcaaaaatg caagtatgaa
     4381 tatctgcata tagtttgaac catctgtgct ctaatggctt caataatgac tctcgtcttt
     4441 agaaggcttt gaaatgacat ccgtacaata ttaatttgtt gatgtacatt gtgggaccag
     4501 tagagtatga tctgaccaca gaaatctata aattctgtct ataccactgg gcctccctgt
     4561 cctggggcct gccatctccg agaagaatct tgctctcatc caactctgca aatcttcata
     4621 acaactcgtt cctctggaac cttctggaga ccacaaacat ctgcagacta aacctctcca
     4681 gtcctagtaa acaaccacat gtttgttgtc acttcggctg gctctgagct catttttttg
     4741 gccccttttt ctagctttct ttggctttat gcagttacag tgtcattaag gcccataata
     4801 ttccctgcag taatttaaaa cagccagatt ataccctggg attaactgag tggtttttga
     4861 gacatttatt gtggtattct cccaggaggt ttgtattatt gttgtaaaat gttacatccc
     4921 aaactaaata acccttctgc agggagaaga accagattgc actgacttct taggatcatt
     4981 aagtggaaag gaaaagtttt tcttagaaaa cttatgggac ccagtcacct gtatggaatg
     5041 tatatctcag acaagatgag agaaacagcc atgtttctgt cacattgttt actgtcatat
     5101 taaagatatc tagttttaaa atattcagtt tcaaactatt gcgaattttc acaacactca
     5161 ttttcatagc taattgctgc tgacacattt tgaagtggcg aggtagtatt gaacgctgtc
     5221 atgtggatac ttcagttggg tttcataatc tgtttgagaa ttttgtttgt tttatcttgt
     5281 ggtaactgga ggccattgaa aagcttacca ccttttgggt taaagagcag tggatttctc
     5341 ttggtgagcc aaactggatc cattgaagag ggcttggcgt caggggccac cagcagtggc
     5401 cttgccacac agataccagc ttaaggtgtt gctggtgtga acatacactt cttggtgtaa
     5461 ctagaccagt gcacgcagca cttttttggg ctgtaatgct tttagtttgg aaatacaaat
     5521 agagatgtga tgtggtatgt gggagagtgt attttacatg tatttttgcc tactgtagta
     5581 gaaatgtcaa attcccagcc actgtcatga aaagcagttg acaaaaataa gttttatggt
     5641 ttacagtgtg gtttacgtaa agaacatttc tcttcactct cagtttcacc atgttttcta
     5701 aattatcatg gtttactgcc atttaactta aattagtttt tttaaaaata cataaagaat
     5761 atgtttaatc aaataaagaa aggccacact gaaattctgc tgttcctgcc attcattcgt
     5821 taccacaaaa cacaaataat ttctatgtgt tatgaagaca tgtgggctga gaagtggtca
     5881 tgtgattgga gaggttttgc gtgcactcat gttcccacaa caaaacataa attattttag
     5941 taatctgaca tcaagagctg tgaaaatgaa aaccagttct tacacatgtt ctaacaagaa
     6001 tctgattaac atttttgtgg atatggaaaa tttttttttt agtcaaactg gcactattgc
     6061 tgaatgtaga atgatttcct tatgcactag atagaaaaat gtgaatcatg tctgtgaaca
     6121 aatatgagaa taaaatgtca tctttgtgta ggacaaaaca accaggagag agattttggg
     6181 ataaaaatta tcaagtgatt gacaatatca ggatgataat tcatccccaa ctatcagagt
     6241 acattttaat aagtcactca tgcctgaagg cctctgacta ccttaacaaa gaaaaactaa
     6301 acccgtgatt tattagagat tgggcaacat gcctaattaa atccatgaat gggaacaaac
     6361 agatttacat cccctttgtt cagaacaaaa acaacctcta ggtcaaccag aaagctagaa
     6421 aatatcaaag caagagaaac aagtgttttt aaaactaaaa atatagaatt agaaaacatc
     6481 tcctcatcct aatctctttt atcttacaag gtagaatttt cacttccatt tcaaagtgcc
     6541 accagtggac tgcaccctcc agcctgaccg cctggaaaat tggacccata ttactggtat
     6601 tcttatacct tttgttcttg ccctttcatt ttccatatga cattcactaa tatatcaagc
     6661 tatgtttttc cttcaggctt ttggaagtgc aatctggtac tcttagactt cgatcatgac
     6721 ctgttttctg aggtagatgc tgtttgactt ttctgctttt tgcctcttct cactctattg
     6781 agagtcacct ttttcatccc tagaacagca ttacctctgt cttcactgtg caccatttgt
     6841 tttcttttta aataaaattt aacatcttga ttttta
//
