LOCUS       XM_011522971            6456 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens RPGRIP1 like (RPGRIP1L), transcript variant
            X14, mRNA.
ACCESSION   XM_011522971
VERSION     XM_011522971.4
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000016.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_011522971.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6456
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
     gene            1..6456
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /note="RPGRIP1 like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 158 ESTs, 252
                     long SRA reads, 1 Protein, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
     CDS             65..3406
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /codon_start=1
                     /product="protein fantom isoform X10"
                     /protein_id="XP_011521273.1"
                     /db_xref="GeneID:23322"
                     /db_xref="HGNC:HGNC:29168"
                     /db_xref="MIM:610937"
                     /translation="MSGPTDETAGDLPVKDTGLNLFGMGGLQETSTTRTMKSRQAVSR
                     VSREELEDRFLRLHDENILLKQHARKQEDKIKRMATKLIRLVNDKKRYERVGGGPKRL
                     GRDVEMEEMIEQLQEKVHELEKQNETLKNRLISAKQQLQTQGYRQTPYNNVQSRINTG
                     RRKANENAGLQECPRKGIKFQDADVAETPHPMFTKYGNSLLEEARGEIRNLENVIQSQ
                     RGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEMIKLHKQLV
                     EKSNALSAMEGKFIQLQEKQRTLRISHDALMANGDELNMQLKEQRLKCCSLEKQLHSM
                     KFSERRIEELQDRINDLEKERELLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQL
                     ETALKSDLTDKTEILDRLKTERGALINQNEKLVQENRELQLQYLEQKQQLDELKKRIK
                     LYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKDLERSMRELQATHAE
                     TVQELEKTRNMLIMQHKINKDYQMEVEAVTRKMENLQQDYELKVEQYVHLLDIRAARI
                     HKLEAQLKDIAYGTKQYKFKPEIMPDDSVDEFDETIHLERGENLFEIHINKVTFSSEV
                     LQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTI
                     TLEVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR
                     VPMDQAIRLYRERAKALGYITSNFKGPEHMQSLSQQAPKTAQLSSTDSTDGNLNELHI
                     TIRCCNHLQSRASHLQPHPYVVYKFFDFADHDTAIIPSSNDPQFDDHMYFPVPMNMDL
                     DRYLKSESLSFYVFDDSDTQENIYIGKVNVPLISLAHDRCISGIFELTDHQKHPAGTI
                     HVILKWKFAYLPPSGSITTEDLGNFIRSEEPEVVQRLPPASSVSTLVLAPRPKPRQRL
                     TPVDKKVSFVDIMPHQSDETSPPPEDRKEISPEVEHIPEIEINMLTVPHVPKVSQEGS
                     VDEVKENTEKMQQGKDDVSLLSEGQLAEQSLASSEDETEITEDLEPEVEEDMSASDSD
                     DCIIPGPISKNIKQQLCENCHIQLD"
     polyA_site      6456
                     /gene="RPGRIP1L"
                     /gene_synonym="COACH3; CORS3; FTM; JBTS7; MKS5; NPHP8;
                     PPP1R134"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcccgccacg ctgtcggcgc tatagcaacg gtagctagct gcagggccag tggcacgcta
       61 ggccatgtct ggtccaactg atgagactgc aggagacttg cctgtgaaag atacaggtct
      121 aaacctcttt ggaatgggag ggttacaaga aacttcaaca acacggacaa tgaagtctcg
      181 ccaggcagtg tcacgtgtca gtcgtgagga actggaagac agatttttgc gtttgcatga
      241 tgagaacatt ttacttaaac agcatgcccg caagcaggag gataaaatta aaagaatggc
      301 caccaagtta atacggctag ttaatgacaa gaaaagatat gagcgggttg gtggcggccc
      361 caagcggctg ggacgagatg tggaaatgga agaaatgatt gagcagctgc aagagaaagt
      421 tcatgagctt gaaaaacaaa atgaaaccct caaaaacaga ctgatttcag ccaaacagca
      481 acttcaaacc cagggttaca ggcaaactcc atacaataat gtacaatctc gtattaacac
      541 tgggcgtaga aaagcaaatg aaaatgctgg tttacaggaa tgccccagga aaggtataaa
      601 attccaagat gcagatgtag cagaaactcc acatcccatg tttacaaaat atggcaacag
      661 tttacttgaa gaagccagag gagaaataag aaatttagaa aacgttattc agtcacaaag
      721 aggccagata gaggagttag agcacttggc tgagatcctg aaaactcagt tgaggagaaa
      781 agaaaatgaa attgagttat ctcttcttca gcttcgagaa cagcaagcta cagatcaaag
      841 gtcaaatatt cgggacaatg tagaaatgat taagcttcat aaacagctag tagagaaaag
      901 caatgctctt tcagcaatgg aaggaaaatt tattcagctt caagagaagc aaagaactct
      961 cagaatcagc cacgatgctt tgatggcaaa tggggatgaa ttaaacatgc aacttaaaga
     1021 gcagcgttta aaatgctgca gtcttgagaa acaattacat tctatgaagt tttctgaaag
     1081 aagaatagaa gagctgcagg atagaattaa tgatttagaa aaggaacggg aacttttaaa
     1141 ggaaaactat gataaacttt atgacagtgc cttcagtgct gcccatgaag agcaatggaa
     1201 gttaaaggag caacagctga aagtgcagat tgctcagctc gagactgcct tgaagtctga
     1261 cttaacagac aaaactgaaa tccttgacag attaaaaact gaaagaggag ccttaataaa
     1321 tcaaaatgaa aaactcgttc aagagaatag agaactacag ttacagtatc tggaacaaaa
     1381 gcaacaactt gatgaactta aaaaacgcat aaaattgtac aaccaggaga atgatattaa
     1441 tgctgatgaa ttgagtgaag ctctcctact tataaaggct caaaaagaac aaaaaaatgg
     1501 agacctttcc tttttagtga aagtagatag tgaaattaat aaagatctag aacgctctat
     1561 gagagagctg caagcaactc atgcagaaac ggtgcaagag ctggaaaaga caagaaacat
     1621 gctaattatg caacacaaaa ttaataaaga ttatcagatg gaggttgagg cagtgacccg
     1681 taagatggaa aatttgcagc aagattatga actcaaagtg gaacagtatg ttcatcttct
     1741 tgatatcagg gctgcacgta tccataaact agaagcccaa ttaaaggata ttgcctatgg
     1801 caccaagcag tacaaattta aaccagaaat catgccagat gactctgttg atgaatttga
     1861 tgaaaccatc cacttagaac gaggcgaaaa tctatttgaa atccatatca acaaagtaac
     1921 cttttcttct gaagttttac aggcatctgg agataaagag cctgtcactt tctgtaccta
     1981 tgctttctat gattttgaac tacagacaac tcccgtagtg cgaggccttc atcccgaata
     2041 taacttcact tctcaatatc ttgttcatgt taatgactta tttttgcaat atattcagaa
     2101 gaatactatc acccttgagg tccaccaggc ttatagcaca gaatatgaaa caattgcagc
     2161 atgtcaatta aaatttcacg aaattcttga aaaaagcggc cgaatatttt gtacagcaag
     2221 tttgattgga acaaaaggag acatcccaaa ttttggcaca gtggaatact ggttccgatt
     2281 aagagttccc atggatcaag caattcgact ttatcgagaa agggcaaagg ctttggggta
     2341 tataacatca aattttaagg ggccagagca tatgcagtcg ttaagtcagc aagcacccaa
     2401 aactgctcaa ctcagttcta cagattccac agatggcaac ttaaatgaac ttcacattac
     2461 aataagatgt tgcaaccacc tgcagtcccg agcaagccac ctgcagccac acccatatgt
     2521 tgtgtacaag ttttttgatt ttgcagacca tgatacagct atcattccca gtagcaatga
     2581 tccacagttt gatgatcata tgtatttccc agtgccaatg aatatggact tggatcgata
     2641 ccttaagtca gagtctctga gtttttatgt ttttgatgat agtgataccc aggagaatat
     2701 ttacatagga aaagtcaatg tgcctctgat ttcgttggca catgacaggt gtatctcagg
     2761 aatatttgag ttaacagacc atcaaaagca tcctgctggc accatccatg ttatattgaa
     2821 atggaaattt gcttaccttc caccaagtgg atcaataaca actgaagact taggaaattt
     2881 cattcgcagc gaagagccag aagttgttca aagacttcct ccagcatcct ctgttagcac
     2941 actagtttta gcaccaagac ctaaaccaag acaacgttta acacctgtag ataagaaggt
     3001 atctttcgtg gatatcatgc cacatcagag tgatgagact tctcctcctc ctgaagatag
     3061 gaaggaaatt tcaccagagg tagagcatat accagaaata gaaattaata tgctgactgt
     3121 tccacatgtt cccaaggttt cacaagaagg cagtgtagat gaggtaaaag agaatactga
     3181 gaaaatgcag caaggaaaag atgatgtgtc tttactatct gaaggtcagc ttgcagaaca
     3241 aagcttggca tcttctgaag atgaaacaga aataacagag gacttggaac cagaagttga
     3301 agaggacatg tcagcttctg acagtgatga ctgtattatt ccaggtccta tctccaagaa
     3361 tatcaaacag cagttgtgtg aaaactgcca tattcaattg gactaaattg cagttccacc
     3421 tggaaactag gttctctgaa caatgagctg gcattcccag gtgattacaa taacgatgtt
     3481 cagcaaagta tgtttaaaac tttgaaaggc acaatgcaga aatcaattca ctcgctttag
     3541 aattcgcata tgaaaaatta ttaaatcact taggaatcaa atatgatatc ttatcagtgg
     3601 ataaaataag ccactctcaa tgttttacat gtggaagctt aagctagata gagagtaggt
     3661 tttaaaatat attttacttg gccgggtgcg gtggctcaca cctgtaatcc cagcactttg
     3721 ggaggctgag gtgggcagat tacctgaggt caggagttct agaccagccc aaccaacatg
     3781 gtgaaaccct gtctctacta aaaatacaaa aattagccgg gcgtgttggc gggcacctgt
     3841 aattccagct actcgggagg ggaggcaaga cagtccttga gcctgggagg cagaggttgc
     3901 agtgagtcga gattgcacca ctgcactcca gcctgggcaa cagagcaaga ctctgtcaca
     3961 aaaataaata aataaaaata aaatatattt tatgtcaaac tggaaatgtt gacatactct
     4021 cctagtagaa attgctttta aaactatttt ttatgctttg caatttaact aactcttact
     4081 aatataccat caacattttt ccataacagt atactctatt tctttcaaca tacctataat
     4141 attccattat atggctatac tatatttatt taaataagcc ccttttgatg gacccttaag
     4201 tgtttctatg attttttgct aatacaaata tatctgctta agatgaacat tattatatat
     4261 aacaatgttt gaaaattcat gttttctcct attacactct ttgccaaact aatgaataaa
     4321 ttttgcctta gtgatgattt catttaaaaa gaaacaaatg gggccagatg tggtggctga
     4381 cagctgtaat cctaacactt gaggaagtcc aaggcaagag gattgtttga ggatagcagt
     4441 tcaggaccag cctgggcaat gtaacaagac ccccatctct acaaaaacaa tttttttaca
     4501 ttggccaagc ctggtgacac atgcttgtag tcctagctac tctgaaggct gaggttggag
     4561 gatcgcttga gcccaggagt tcagggctgc agagctggga tcataccact gcactccagc
     4621 ctgtgtgaca gaggagaacc tgtcgctgca acacacacac acacaaaaga aatacaaaaa
     4681 ggtctatata tatattttta tttgcacata cagacatgac atttaggttt atgtaagcaa
     4741 agaaaatgtt tgggaaaatg tacatctgac agcgttagca gtgaatatct ctagggcagg
     4801 agtcagcaaa caatggcccc tgtgccaaat ccagccctct actgttattg gaacccagcc
     4861 acccgttcgt ttacatatta tctattgctg ctttcactcc acaagggcac agttgaatac
     4921 catatagctg caatgccaaa aacatttgta ttcatccttt tacagaaaaa aaaattgcca
     4981 actcatgagt taggtggtag aatgaaacaa ggaactttca tatttgacat ttggtaattt
     5041 atattgttgg attattttta atggtgagca tcgattgact caaaaaagga agtagttagc
     5101 taattctgta ctaaaatgtt gaataatagc aaaagaactg tttaacatga atattgtgaa
     5161 agcttttcta taaagatgtt agaagtctcc atggatggaa gatgaatctt ttttggttta
     5221 gagcaatatt tctcaaagtg tgatccccag agttcagcat cagcatctgc atcacctgag
     5281 aatttgtaag agatgcaaat ccttggcccc accagagacc taatgaatta gaagttctat
     5341 ggagtccacc aatccgtgtt ttatcaagtg attctggggt atgctaaaat gcaagaacca
     5401 tagctttaga aaaaagtggt acttttcacc cttggctgca catgagaatc gtctggggag
     5461 cattgttaaa tgccagggcc caggctccac ctagataaat taagtcagaa ttttgtttat
     5521 agctcccctg gtgattctaa tgtgcagcca aaatcaagaa ccactgcact gcaacatctg
     5581 ttctcagtga tggtgaaagg agagtagcat atcaaaatca cctgaaattg agggtgattt
     5641 ttaaaattct ccttgcttca cattgctgca atgtgtcata tccctcaggt ttgtatctat
     5701 ttatacacat ttatacacac acacacacca tttctatggt gatgaaataa taccaattta
     5761 taattatttg gcataattat ttggagatta atttgatatt agggcaggaa aaaaataatc
     5821 caaatcactg caaggacata gtaatttata gggcatataa ggacaccgtg acaatgttct
     5881 aaaaataagt actgttaaag ctagcactgt tttgatcccc atcactgaag tttgcaacgt
     5941 ttaccttatt tgtttaatat agtacatttt aacagaacat gttagaaaag atagattact
     6001 gccacggacg aaaactgggt ggttttcttt tgtttgttaa aaaccttatt accttgacag
     6061 cttgagattc tggagacatc acctttgtat gtacttatta ttattatttt aaataatcaa
     6121 cagttgttaa aataaacagt taaacagtta ttaaacaatc aaaatgcttt aatcagaact
     6181 tgtatgagga gtggatttga tgcacaatgt aagaggaagc tttggagcct gatgtgaagg
     6241 actgaagggg atttttttga gtctttgaga ggatgtctct gcccatgccc agcctgaaga
     6301 agggaacttg taagaatcac cattaattaa tatgcattcc taccctactt acatatggct
     6361 ctgtcaatac cagtggttga gtctgattgt tttaaccaac tgttttgagc ttgtcttaga
     6421 gctcacccca attaaaattt gtactcttca aaagca
//
