LOCUS       XM_005258285            3364 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens ring finger protein 138 (RNF138),
            transcript variant X3, mRNA.
ACCESSION   XM_005258285
VERSION     XM_005258285.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000018.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_005258285.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 42% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3364
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="18"
     gene            1..3364
                     /gene="RNF138"
                     /gene_synonym="hNARF; HSD-4; NARF; STRIN"
                     /note="ring finger protein 138; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 32
                     ESTs, 545 long SRA reads, 1 Protein, and 92% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 26 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:51444"
                     /db_xref="HGNC:HGNC:17765"
                     /db_xref="MIM:616319"
     CDS             391..990
                     /gene="RNF138"
                     /gene_synonym="hNARF; HSD-4; NARF; STRIN"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF138 isoform X2"
                     /protein_id="XP_005258342.1"
                     /db_xref="GeneID:51444"
                     /db_xref="HGNC:HGNC:17765"
                     /db_xref="MIM:616319"
                     /translation="MRESGAHCPLCRGNVTRRERACPERALDLENIMRKFSGSCRCCA
                     KQIKFYRMRHHYKSCKKYQDEYGVSSIIPNFQISQDSVGNSNRSETSTSDNTETYQEN
                     TSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRN
                     FVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEESFQVNI"
ORIGIN      
        1 gccgtgcgcc ggttgctata caggccgcac ttcacacccc gtgcctcccc gcctctcctg
       61 gctcctccgc ccagatcccc ggcgctcccg cgttcggtga cggccgggta ggctgtaggc
      121 agcgcaatgc caagacagag ctgctggcgg cggcgggcga atctccctgc accatgagcc
      181 tcggctccgg ccccgttagg ggccgataag cacagcgcac gccgccctcc atttgccccg
      241 gggcctcggc tgcgaagata gcggcggccg gacaggaagc tcgaggaaag cgctgggccg
      301 ggtctctacg aacacgtgaa ggaaaagcag ctccgtccac aacgccgctt cggggctcct
      361 agtttctgta gaaaatgttt cctgactgca atgagggaaa gcggagcaca ttgtccccta
      421 tgtcgtggaa atgtgactag aagagagaga gcatgtcctg aacgggcctt agaccttgaa
      481 aatataatga ggaagttttc tggtagctgc agatgctgtg caaaacagat taaattctat
      541 cgcatgagac atcattacaa atcttgtaag aagtatcagg atgaatatgg tgtttcttct
      601 atcattccaa actttcagat ctctcaagat tcagtaggga acagcaatag gagtgaaaca
      661 tccacatctg ataacacaga aacttaccaa gagaatacaa gttcttctgg tcatcctact
      721 tttaagtgtc ccctgtgtca agaatcaaat tttaccagac agcgtttact ggatcactgt
      781 aacagtaatc acctatttca gatagttcct gtgacatgtc ctatttgtgt gtctcttcct
      841 tggggagatc ctagccagat taccagaaat ttcgttagtc atctaaatca gagacatcaa
      901 tttgattatg gagaatttgt gaatcttcag ctagatgaag aaacccaata ccaaactgct
      961 gttgaagaat cttttcaagt aaacatctga aggctgtaga catctctgca tctttgtacc
     1021 tgcaagtgcc atctttaagg gggaaactac atgaagtcac cgttacagta acttgatgtg
     1081 tatattaata aaagtaattc agtcatttta gtttttgatt gaaaataaag gtagggcttc
     1141 taaaaacttc atcatcttga taagttaaaa aatgaaagtt atgacattag ctttaaaggt
     1201 gtaaaaaaga tgtttcacta atgtaacggt gaaagagaat ccctgttgta ctttatcttt
     1261 ttgtaatatt atttttgaat ttttcattat tatgttgctt ttgaaatttg atgcattcct
     1321 cccatttact ttattattgt acacatttaa cacacagtag caaattttga acgatgtgat
     1381 tgatataacc taacaaatct gagccagtta ttattagagt tgcagaatag aaacttgaag
     1441 tgctaaatgg aataatccaa aggaaatttt ttaaatgcag gttctagctg aaaaattcaa
     1501 ctataagaaa attgtattta tataacattt actatttttg aagactagtg agatttctgt
     1561 aataatttta attctttaaa aagtgaaagc ttgttgtaaa gatattttct ttttgttatt
     1621 agaaggaaat acaaagagaa aaatttcttt ctttcatggg catttgataa tttcagtctt
     1681 tgactgattt gtaagcctag aatatactaa gctgaataac agctctttgg cctcagaatt
     1741 ttcagtagcc agtatttctg attaactaag ttgaaactct tattagaaac tttcagttgg
     1801 tgatattgta ttctagaaga tataaatgag aggtttggct tcatctcagt ttagaaattt
     1861 attcaaagct aaagatgtat atatacatat acttttgtgt gtatatatac acatatgtgt
     1921 gtatgcagtt tgtcaggtta tatatagaat ttctattaag gattttttaa atggacaagc
     1981 aatagggggt tgaagtgttt atctgatttg tttaaaattt tgtatatcac caaattttta
     2041 aaaagtgata gtcacagtgc taagttatct agttggctac tattacacct taaaaattga
     2101 gtttacacac acacaattac ctgtttatat ggtgctcatt tgttattctc aaatataatg
     2161 tgtgaccgtg atatagtgag aaagattcta ccaaccactg tttcactact ttttagttaa
     2221 aattgggtat gttcttaata ttcattagtg agaatcacaa agtattttgt agaaggccca
     2281 aatcacagaa taaaggacta agagtggatt tgctgacatt ccatactaat atacattgtt
     2341 tatgctttct ttaaaataac tagaagaaca taaaagaaag agaatctcag aagtagtttg
     2401 ctgctaatat atacatatat tgtataaaaa ggtatatttt ggttttgtta aaacccttgt
     2461 tgacttttct acactgaaca ttttttttaa cttgatttaa taaaaatgtt aattttggaa
     2521 gtgcagtttt gtaaaaacct ttttcagtca aacagtaaag actttattta tggattgtaa
     2581 taacaaccac aagaaaagcc atacatctta atgaacatac gcctttgttc tgtcatttta
     2641 aagagtggtg tttactatgt gtgtgcttga gcattttctt tcagttacat gggtgtaatt
     2701 taaaaaacag ctccttttta agacttttga ccatagtgtt ttccagttta aagcaataac
     2761 tttcatagtt tctttcaaag tttaatacat ccaatatgtc aagttaaacc attctgggat
     2821 ttgcaaagtt taatacatcc aatatgtcaa gttaaaccat tctgggattt gcaaagttta
     2881 atacatccaa tatgtcaagt taaaccattc tgggatttgg gaacttcttt aaaggaaaat
     2941 tgtagtagag gtcatcttga tggaattgtg ttttaaagtt ttgtgaatga gttaaatatc
     3001 attgatagtc ttgtgtgtct cacatatcag ctttttcata aggaaaatac tttatttgct
     3061 tttatctgag aatttctcag tatgaaaatg attgtttaaa atttcccctc tttttgtcag
     3121 tgcattggga atagggatag actttacaga tttatggaaa ttaaatttat ggggaaaagt
     3181 ttatttttaa tattacttat agctgagtca gaattaaagg agggaattgt attgatactc
     3241 caatacctaa atttcacaat accacttagg aaagctattt caacaaatta cagttttatt
     3301 gttaaaacag agtcttattt gagatgtatt gctttatttt tcaattaaaa gtggttttct
     3361 ccta
//
