LOCUS       XM_047439192            4460 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens regulatory factor X1 (RFX1), transcript
            variant X3, mRNA.
ACCESSION   XM_047439192
VERSION     XM_047439192.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000019.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4460
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
     gene            1..4460
                     /gene="RFX1"
                     /gene_synonym="EFC; RFX"
                     /note="regulatory factor X1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 18
                     ESTs, 271 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:5989"
                     /db_xref="HGNC:HGNC:9982"
                     /db_xref="MIM:600006"
     CDS             320..3295
                     /gene="RFX1"
                     /gene_synonym="EFC; RFX"
                     /codon_start=1
                     /product="MHC class II regulatory factor RFX1 isoform X2"
                     /protein_id="XP_047295148.1"
                     /db_xref="GeneID:5989"
                     /db_xref="HGNC:HGNC:9982"
                     /db_xref="MIM:600006"
                     /translation="MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPP
                     TAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIV
                     VTVSEGAMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSP
                     LQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSS
                     KTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVA
                     QESSGSQFPARKAEQRDPRPTPPPEPPPRPPACSGEAPQLGSPEPPPPHYEPGAEQWV
                     ELVGVLPPHLLLPQQKVVFEPLSRLPARASPDQRVRIQRIPQVLVFGTAATALKVQQL
                     QQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQ
                     VQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRL
                     GTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVA
                     VGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLY
                     REHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLL
                     SKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVN
                     IPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANV
                     QEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPK
                     AAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETP
                     IAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPP
                     AKLARTDARGLFVQALPSS"
ORIGIN      
        1 agaaactggc ccaccgagcg agagagaagt ctggagcgga gtcttccttt ctcgcctttt
       61 taatttgaga cggggtttcg ccatgttggc cagactggtc tcgaactcct gacctcagct
      121 gatccacctg cctaggcctc acaaagtgct ggaattatag gtgtgagcca ccgtgcccgg
      181 cctgatctca ttggatcttt gcagcaattt gatgaattgg gtgttctcgt tatccccagg
      241 tgacaggcaa ctgaggccca gaagaaggaa ttaaaaaaaa aaaaaagcct tatttattat
      301 cattttcccc accgttggca tggcaacaca ggcgtatact gagctacagg cagccccgcc
      361 accatcccag ccgccacagg ccccgccaca agcccagccc cagccgccac cgccaccacc
      421 cccagcggca ccccagcccc cgcagccacc caccgctgct gccacccctc agccccaata
      481 tgtcaccgag ctgcagagcc cccagcccca ggcacagcca ccgggtggcc agaagcagta
      541 cgtgacggag ctcccggctg tacccgcacc ctcgcagcca accggtgcac ccaccccttc
      601 gcctgcaccc cagcagtaca tcgtggtcac tgtctctgaa ggtgccatgc gggccagcga
      661 gacagtgtcg gaggccagcc ccggctccac cgccagccag accggcgttc ctactcaggt
      721 ggttcagcag gtgcagggca cccagcagcg gctgctggtc cagacgagcg tgcaggccaa
      781 gccaggccac gtgtcgcccc tccagctgac caacatccaa gtgccccagc aggctcttcc
      841 cacgcagcgt ctggtggtgc agagcgcagc cccaggcagc aaaggtggcc aggtctccct
      901 gacggtccat ggtacccagc aggtgcactc gcccccagag cagtcgccgg tgcaggccaa
      961 cagctcttcc agcaagacag ccggggcccc cacgggcaca gtgccacagc agctgcaggt
     1021 ccacggcgtc cagcagagtg tccccgtcac ccaagagaga tctgtggtcc aggccactcc
     1081 acaagcgccc aaacccggcc cggtgcagcc gctgaccgtg cagggcctcc agccagtcca
     1141 cgtggctcaa gagagctcag gcagtcagtt tcccgctagg aaggcagagc agcgagatcc
     1201 ccggcccacg ccgccgccgg agccgccgcc ccggccgccc gcgtgcagcg gcgaggcccc
     1261 gcagctaggc agccccgagc cgccgccgcc ccattacgag ccgggcgccg agcagtgggt
     1321 ggagctggtg ggcgtgctgc ccccacacct gctcctgccg cagcagaaag tggtcttcga
     1381 gccactgtcc cggctcccgg cccgagccag ccccgaccag agggtcagga tccagagaat
     1441 cccccaggtg ctagtgttcg gcacggccgc cacggccctc aaagtgcagc agctccagca
     1501 ggtgcccgtc ccacacgtgt actccagcca ggtgcagtat gtggagggcg gcgatgccag
     1561 ctacacggcc agtgccatcc gttccagcac ctactcctat cccgagacgc cgctgtacac
     1621 gcagacggca agcaccagct actacgaggc cgcaggcacg gccacccagg tccagtggct
     1681 cctggacaac tatgagacgg ctgagggcgt gagtctgcca cggagcaccc tctactgcca
     1741 ctacttactg cactgccagg agcagaagct ggagcccgtc aacgccgcct ccttcggcaa
     1801 gctcatccgc tccgtcttca tgggcctgcg aacccgccgt ctgggcacca ggggcaactc
     1861 caagtaccac tactatggcc tgcgcatcaa ggccagctca cccctgctgc ggctgatgga
     1921 ggaccagcag cacatggcca tgcggggcca gcccttctcg cagaagcaga ggctcaagcc
     1981 catccagaag atggaaggca tgaccaacgg cgtggcggtg gggcagcagc cgagcacggg
     2041 gctgtcggac atcagcgccc aggtgcagca gtaccagcaa tttttggatg cctctcggag
     2101 cctccctgac ttcacagagc tcgacctcca gggcaaggtg ctgcctgagg gcgtcgggcc
     2161 cggggacatc aaagccttcc aggtcctgta ccgggaacac tgtgaggcca ttgtcgacgt
     2221 catggtgaac ctgcagttca ccctggtgga gacgctgtgg aagaccttct ggaggtacaa
     2281 cctcagccag cccagtgagg cgccaccgct ggctgtacat gacgaggccg agaagcgact
     2341 gcccaaagcc atcctggtgc tcctctccaa gttcgagccc gtgctccaat ggaccaagca
     2401 ctgtgacaac gtgctgtacc agggcctggt ggaaatcctc attcccgacg tgctgcggcc
     2461 catccccagt gccttgaccc aagcgatccg gaactttgcc aagagcctgg agagctggct
     2521 cacccacgcc atggtcaaca tccccgagga gatgctgcgg gtgaaggtgg ccgcggctgg
     2581 cgccttcgcg cagacactgc ggcgctacac gtcgctcaac cacctggcgc aggcggcgcg
     2641 cgctgtgctg cagaacaccg cacagatcaa ccagatgctg agcgacctca accgcgtgga
     2701 cttcgccaac gtgcaggagc aggcctcgtg ggtgtgccgc tgcgaggacc gcgtggtgca
     2761 gcggctggag caggacttca aggtgacgct gcagcagcag aactcgctgg agcagtgggc
     2821 ggcctggctg gacggcgtgg tgagccaggt gctcaagccc taccagggca gcgccggctt
     2881 ccccaaggcc gccaagctct tcctcctcaa gtggtccttc tacagctcca tggtgatccg
     2941 ggacctgacc ctgcgcagcg ccgccagctt cggttccttc cacctcatcc ggctgctcta
     3001 cgacgagtac atgtactacc tgatcgagca ccgcgtagcc caggccaagg gcgagacccc
     3061 catcgccgtc atgggcgagt tcgccaatct ggccacctcc ctgaaccccc tggaccccga
     3121 caaagacgag gaggaagaag aggaggagga gagcgaggac gagctgccgc aggacatctc
     3181 actggcggct ggcggcgagt cacccgcgct gggcccggag accctggagc cgccggccaa
     3241 gctggcgcgg actgacgcgc gcggcctctt cgtgcaggcg ctgccctcca gctaagccct
     3301 tggcctcccc gccccacccg cccccgccac ccctccacgc cagggtccct caaagcttct
     3361 gtggcttcgt ggtcactgct ccagcctcag ccagggcagg gagggggact ccgagacagg
     3421 gaagaccggg gccctcctcc cttatggggc cggcacaatc agtgggctgg gcggagccgc
     3481 agctgcaaac tctgacacaa aagacgtgcc ttaaggaacc cgccgcgtgc ccaggtgccc
     3541 cgcggggcat ccagctcggc cccttggccg cccccctccc aggccccagc gtcttctccc
     3601 cagccccgtc ctcccaccac cccagggggc aggcaggcag gccccctccc gtgcgaaact
     3661 gttaacttat tcagctcgct ggctttgcac agcctgtcct gggcccagcc ctgagccccg
     3721 ggccggcgca ggtgggcgtc acctggggac tccccactgt cagcagcagc cccgggacac
     3781 cctaccccca gcaaccccac tgcttcccct tcttggtatt aagtgcaatt aaagccgtgg
     3841 gtgtcgcatc ttctccagcg ctgggccctc ccttgccccc aagctcaaga agggggcact
     3901 gcccggcccg gctgtgagga gggcggcagg gggcacggcc tccagcttcc aaagagcagc
     3961 gagccgcgga gccggggagt gcccacagac cccagccccc gcgcccccgc cctccgccgc
     4021 tggtttgtaa tggaaccttt tctgtgcccc tatcttcccg gagaccacgc ttctcctccg
     4081 tgccgtgcga cccccacccc atgactattg tgcgattcgt gagcgccgcc cgagcggagt
     4141 tggtaacttg ttgggttttt ttccaaccat catggcctta tctgttccag ttttctcagt
     4201 gttttcagcc tgtgagatag atgtttatgg caagaaaaag gaaaaaaaaa tggaaatctg
     4261 acctattgta taaaaatcac tattttgtgt gctccgcgtg ctatagcttt tggggcggcc
     4321 ctgcccagtc cccgtgccca cggggctccc tctcccggtg gtgaaagtgt ccacacgtgt
     4381 ggtagtctag tgtgccgagc tgttttctac ctttttgtag tctttcttaa aacaataaat
     4441 tccgctgtga tatttgccta
//
