LOCUS       XM_011528166            4754 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens regulatory factor X1 (RFX1), transcript
            variant X1, mRNA.
ACCESSION   XM_011528166
VERSION     XM_011528166.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000019.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_011528166.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4754
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
     gene            1..4754
                     /gene="RFX1"
                     /gene_synonym="EFC; RFX"
                     /note="regulatory factor X1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 302 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:5989"
                     /db_xref="HGNC:HGNC:9982"
                     /db_xref="MIM:600006"
     CDS             320..3589
                     /gene="RFX1"
                     /gene_synonym="EFC; RFX"
                     /codon_start=1
                     /product="MHC class II regulatory factor RFX1 isoform X1"
                     /protein_id="XP_011526468.1"
                     /db_xref="GeneID:5989"
                     /db_xref="HGNC:HGNC:9982"
                     /db_xref="MIM:600006"
                     /translation="MATQAYTELQAAPPPSQPPQAPPQAQPQPPPPPPPAAPQPPQPP
                     TAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIV
                     VTVSEGAMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSP
                     LQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSS
                     KTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVA
                     QESSGSQFPARKAEQRDPRPTPPPEPPPRPPACSGEAPQLGSPEPPPPHYEPGAEQWV
                     ELVGVLPPHLLLPQQKVVFEPLSRLPARASPDQRVRIQRIPQVLVFGTAATALKVQQL
                     QQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQ
                     VSTPATSQAVASSGSMPMYVSGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGG
                     GSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPR
                     STLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKAS
                     SPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQ
                     YQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTL
                     VETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHCDNVLY
                     QGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQ
                     TLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRL
                     EQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIR
                     DLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLD
                     PDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLFVQALPS
                     S"
ORIGIN      
        1 agaaactggc ccaccgagcg agagagaagt ctggagcgga gtcttccttt ctcgcctttt
       61 taatttgaga cggggtttcg ccatgttggc cagactggtc tcgaactcct gacctcagct
      121 gatccacctg cctaggcctc acaaagtgct ggaattatag gtgtgagcca ccgtgcccgg
      181 cctgatctca ttggatcttt gcagcaattt gatgaattgg gtgttctcgt tatccccagg
      241 tgacaggcaa ctgaggccca gaagaaggaa ttaaaaaaaa aaaaaagcct tatttattat
      301 cattttcccc accgttggca tggcaacaca ggcgtatact gagctacagg cagccccgcc
      361 accatcccag ccgccacagg ccccgccaca agcccagccc cagccgccac cgccaccacc
      421 cccagcggca ccccagcccc cgcagccacc caccgctgct gccacccctc agccccaata
      481 tgtcaccgag ctgcagagcc cccagcccca ggcacagcca ccgggtggcc agaagcagta
      541 cgtgacggag ctcccggctg tacccgcacc ctcgcagcca accggtgcac ccaccccttc
      601 gcctgcaccc cagcagtaca tcgtggtcac tgtctctgaa ggtgccatgc gggccagcga
      661 gacagtgtcg gaggccagcc ccggctccac cgccagccag accggcgttc ctactcaggt
      721 ggttcagcag gtgcagggca cccagcagcg gctgctggtc cagacgagcg tgcaggccaa
      781 gccaggccac gtgtcgcccc tccagctgac caacatccaa gtgccccagc aggctcttcc
      841 cacgcagcgt ctggtggtgc agagcgcagc cccaggcagc aaaggtggcc aggtctccct
      901 gacggtccat ggtacccagc aggtgcactc gcccccagag cagtcgccgg tgcaggccaa
      961 cagctcttcc agcaagacag ccggggcccc cacgggcaca gtgccacagc agctgcaggt
     1021 ccacggcgtc cagcagagtg tccccgtcac ccaagagaga tctgtggtcc aggccactcc
     1081 acaagcgccc aaacccggcc cggtgcagcc gctgaccgtg cagggcctcc agccagtcca
     1141 cgtggctcaa gagagctcag gcagtcagtt tcccgctagg aaggcagagc agcgagatcc
     1201 ccggcccacg ccgccgccgg agccgccgcc ccggccgccc gcgtgcagcg gcgaggcccc
     1261 gcagctaggc agccccgagc cgccgccgcc ccattacgag ccgggcgccg agcagtgggt
     1321 ggagctggtg ggcgtgctgc ccccacacct gctcctgccg cagcagaaag tggtcttcga
     1381 gccactgtcc cggctcccgg cccgagccag ccccgaccag agggtcagga tccagagaat
     1441 cccccaggtg ctagtgttcg gcacggccgc cacggccctc aaagtgcagc agctccagca
     1501 ggtgcccgtc ccacacgtgt actccagcca ggtgcagtat gtggagggcg gcgatgccag
     1561 ctacacggcc agtgccatcc gttccagcac ctactcctat cccgagacgc cgctgtacac
     1621 gcagacggca agcaccagct actacgaggc cgcaggcacg gccacccagg tcagcacccc
     1681 cgccacctcc caggcggtgg ccagcagtgg ctccatgccc atgtacgtgt ccggcagcca
     1741 ggtcgtcgcc agctccacca gcactggggc tggggccagc aacagcagcg gaggtggtgg
     1801 cagtggtggt ggcggcggcg gcgggggagg cggtggcggg ggtggcagtg gcagcaccgg
     1861 aggcggcggc agcggagcag gcacctacgt gatccaaggc ggctacatgc tgggcagtgc
     1921 cagccagtct tactctcaca ccacccgtgc ctcgccagcc acggtccagt ggctcctgga
     1981 caactatgag acggctgagg gcgtgagtct gccacggagc accctctact gccactactt
     2041 actgcactgc caggagcaga agctggagcc cgtcaacgcc gcctccttcg gcaagctcat
     2101 ccgctccgtc ttcatgggcc tgcgaacccg ccgtctgggc accaggggca actccaagta
     2161 ccactactat ggcctgcgca tcaaggccag ctcacccctg ctgcggctga tggaggacca
     2221 gcagcacatg gccatgcggg gccagccctt ctcgcagaag cagaggctca agcccatcca
     2281 gaagatggaa ggcatgacca acggcgtggc ggtggggcag cagccgagca cggggctgtc
     2341 ggacatcagc gcccaggtgc agcagtacca gcaatttttg gatgcctctc ggagcctccc
     2401 tgacttcaca gagctcgacc tccagggcaa ggtgctgcct gagggcgtcg ggcccgggga
     2461 catcaaagcc ttccaggtcc tgtaccggga acactgtgag gccattgtcg acgtcatggt
     2521 gaacctgcag ttcaccctgg tggagacgct gtggaagacc ttctggaggt acaacctcag
     2581 ccagcccagt gaggcgccac cgctggctgt acatgacgag gccgagaagc gactgcccaa
     2641 agccatcctg gtgctcctct ccaagttcga gcccgtgctc caatggacca agcactgtga
     2701 caacgtgctg taccagggcc tggtggaaat cctcattccc gacgtgctgc ggcccatccc
     2761 cagtgccttg acccaagcga tccggaactt tgccaagagc ctggagagct ggctcaccca
     2821 cgccatggtc aacatccccg aggagatgct gcgggtgaag gtggccgcgg ctggcgcctt
     2881 cgcgcagaca ctgcggcgct acacgtcgct caaccacctg gcgcaggcgg cgcgcgctgt
     2941 gctgcagaac accgcacaga tcaaccagat gctgagcgac ctcaaccgcg tggacttcgc
     3001 caacgtgcag gagcaggcct cgtgggtgtg ccgctgcgag gaccgcgtgg tgcagcggct
     3061 ggagcaggac ttcaaggtga cgctgcagca gcagaactcg ctggagcagt gggcggcctg
     3121 gctggacggc gtggtgagcc aggtgctcaa gccctaccag ggcagcgccg gcttccccaa
     3181 ggccgccaag ctcttcctcc tcaagtggtc cttctacagc tccatggtga tccgggacct
     3241 gaccctgcgc agcgccgcca gcttcggttc cttccacctc atccggctgc tctacgacga
     3301 gtacatgtac tacctgatcg agcaccgcgt agcccaggcc aagggcgaga cccccatcgc
     3361 cgtcatgggc gagttcgcca atctggccac ctccctgaac cccctggacc ccgacaaaga
     3421 cgaggaggaa gaagaggagg aggagagcga ggacgagctg ccgcaggaca tctcactggc
     3481 ggctggcggc gagtcacccg cgctgggccc ggagaccctg gagccgccgg ccaagctggc
     3541 gcggactgac gcgcgcggcc tcttcgtgca ggcgctgccc tccagctaag cccttggcct
     3601 ccccgcccca cccgcccccg ccacccctcc acgccagggt ccctcaaagc ttctgtggct
     3661 tcgtggtcac tgctccagcc tcagccaggg cagggagggg gactccgaga cagggaagac
     3721 cggggccctc ctcccttatg gggccggcac aatcagtggg ctgggcggag ccgcagctgc
     3781 aaactctgac acaaaagacg tgccttaagg aacccgccgc gtgcccaggt gccccgcggg
     3841 gcatccagct cggccccttg gccgcccccc tcccaggccc cagcgtcttc tccccagccc
     3901 cgtcctccca ccaccccagg gggcaggcag gcaggccccc tcccgtgcga aactgttaac
     3961 ttattcagct cgctggcttt gcacagcctg tcctgggccc agccctgagc cccgggccgg
     4021 cgcaggtggg cgtcacctgg ggactcccca ctgtcagcag cagccccggg acaccctacc
     4081 cccagcaacc ccactgcttc cccttcttgg tattaagtgc aattaaagcc gtgggtgtcg
     4141 catcttctcc agcgctgggc cctcccttgc ccccaagctc aagaaggggg cactgcccgg
     4201 cccggctgtg aggagggcgg cagggggcac ggcctccagc ttccaaagag cagcgagccg
     4261 cggagccggg gagtgcccac agaccccagc ccccgcgccc ccgccctccg ccgctggttt
     4321 gtaatggaac cttttctgtg cccctatctt cccggagacc acgcttctcc tccgtgccgt
     4381 gcgaccccca ccccatgact attgtgcgat tcgtgagcgc cgcccgagcg gagttggtaa
     4441 cttgttgggt ttttttccaa ccatcatggc cttatctgtt ccagttttct cagtgttttc
     4501 agcctgtgag atagatgttt atggcaagaa aaaggaaaaa aaaatggaaa tctgacctat
     4561 tgtataaaaa tcactatttt gtgtgctccg cgtgctatag cttttggggc ggccctgccc
     4621 agtccccgtg cccacggggc tccctctccc ggtggtgaaa gtgtccacac gtgtggtagt
     4681 ctagtgtgcc gagctgtttt ctaccttttt gtagtctttc ttaaaacaat aaattccgct
     4741 gtgatatttg ccta
//
