LOCUS       XM_047427384            7759 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens recombination activating 1 (RAG1),
            transcript variant X1, mRNA.
ACCESSION   XM_047427384
VERSION     XM_047427384.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000011.10) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7759
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
     gene            1..7759
                     /gene="RAG1"
                     /gene_synonym="RAG-1; RNF74"
                     /note="recombination activating 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 381
                     long SRA reads, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:5896"
                     /db_xref="HGNC:HGNC:9831"
                     /db_xref="MIM:179615"
     CDS             1302..4433
                     /gene="RAG1"
                     /gene_synonym="RAG-1; RNF74"
                     /codon_start=1
                     /product="V(D)J recombination-activating protein 1 isoform
                     X1"
                     /protein_id="XP_047283340.1"
                     /db_xref="GeneID:5896"
                     /db_xref="HGNC:HGNC:9831"
                     /db_xref="MIM:179615"
                     /translation="MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTPEE
                     AQKEKKDSFEGKPSLEQSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAI
                     HQANLRHLCRICGNSFRADEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFR
                     IDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTAR
                     RGLKRKSLQPNLQLSKKLKTVLDQARQARQHKRRAQARISSKDVMKKIANCSKIHLST
                     KLLAVDFPEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYP
                     CFPTDLESPVKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHISSHKESKEIFVHINKG
                     GRPRQHLLSLTRRAQKHRLRELKLQVKAFADKEEGGDVKSVCMTLFLLALRARNEHRQ
                     ADELEAIMQGKGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRN
                     AEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDGLSGLSSSVDDYPVDTIAKRFRYDSAL
                     VSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKESCDGMGDVSEKHGSGPVVPEKAVR
                     FSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCLMLADESDHETLTAILSPLIAER
                     EAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEGLEASGSVYICTLCDATRLEA
                     SQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVKGVSAKPFIETVPSIDALH
                     CDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHLRKKMNLKPIMRMNGNF
                     ARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSCPAKECPESLCQYSF
                     NSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNESGNKLFR
                     RFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMNPQASLGDPLG
                     IEDSLESQDSMEF"
ORIGIN      
        1 ggtgcttcat ttccttctct atactgccat cttgaatctc catgattcag agggtttcgt
       61 cacttccttg ctgaattcta gtgttccgcg ttagacgctg tactcaaagt gtagttattt
      121 gtttgttgtt ttgtccttct ttgtggagga ggtgagcttt gacacttcta ggcagccatc
      181 ttgttgacaa catcttccat gtaccttcct taggcacaat tatactgtct ccatcctgcc
      241 atactcaggt acttatggtg ttgcccaatg tctggattaa actggaagct ggaggttgag
      301 ggtactctgg tgatgcagtc caaatggctc attcacttgg agcacaatgt ggggctgagg
      361 aaggaaaaga tggattttct tggggcttct ttacaccttc ctttccacac tgtacaaggt
      421 acctggttct ccaggccttg taggcagatg ggtgagcatg gtctcctaca acttcctttt
      481 ccctggaatt ccacagaggg aactgaggat gaggtgaggt ctttggatga cctactcttc
      541 agcctttgat gcaaatttca tcactcttga ttcacaatct cgttagctct ttctgcccta
      601 ccaattactc cagatttgtt tattaatttt tttttgtgtc aatatggctg gatcacagag
      661 tgctgagata tttggctaaa cattattcct cggtgtgtct gttagtgttt ttctgaatga
      721 tattaacatt taaactattc gactgagtaa agccctcccc tatgaggtgg gcatcatgca
      781 attcatggaa gaaccaaata gaacaaaaag gaggaggaag ggtaaatttt tttctctttc
      841 tacctgattg ctgaagctgg agctgggaaa ttattatttt cctagccttg gactaagact
      901 tgttcttgct cttcagactt ttggattggt actgaaacta taacactgac tttccttagt
      961 ctctagcttg tggatggcag agtgtgatag cctccataat tgtgtgagcc aattcctcat
     1021 ctctctctat tttattggct ccgtttttct gaagacccct gactatacag cagtgtctaa
     1081 tgtgtctaag gtaatatttt aagcagagag aatggccaat gtcagcgtat ccggacattt
     1141 tgaggaccag caaggaggct actgtggctg cggacatccg tgttcctgga tctcaggact
     1201 tcgggcttgg actgaattac actacggatt ttcctggttc tccagcttga agacagcaga
     1261 ttgtgggact tcttgacctc cataattgta cctcagccag catggcagcc tctttcccac
     1321 ccaccttggg actcagttct gccccagatg aaattcagca cccacatatt aaattttcag
     1381 aatggaaatt taagctgttc cgggtgagat cctttgaaaa gacacctgaa gaagctcaaa
     1441 aggaaaagaa ggattccttt gaggggaaac cctctctgga gcaatctcca gcagtcctgg
     1501 acaaggctga tggtcagaag ccagtcccaa ctcagccatt gttaaaagcc caccctaagt
     1561 tttcaaagaa atttcacgac aacgagaaag caagaggcaa agcgatccat caagccaacc
     1621 ttcgacatct ctgccgcatc tgtgggaatt cttttagagc tgatgagcac aacaggagat
     1681 atccagtcca tggtcctgtg gatggtaaaa ccctaggcct tttacgaaag aaggaaaaga
     1741 gagctacttc ctggccggac ctcattgcca aggttttccg gatcgatgtg aaggcagatg
     1801 ttgactcgat ccaccccact gagttctgcc ataactgctg gagcatcatg cacaggaagt
     1861 ttagcagtgc cccatgtgag gtttacttcc cgaggaacgt gaccatggag tggcaccccc
     1921 acacaccatc ctgtgacatc tgcaacactg cccgtcgggg actcaagagg aagagtcttc
     1981 agccaaactt gcagctcagc aaaaaactca aaactgtgct tgaccaagca agacaagccc
     2041 gtcagcacaa gagaagagct caggcaagga tcagcagcaa ggatgtcatg aagaagatcg
     2101 ccaactgcag taagatacat cttagtacca agctccttgc agtggacttc ccagagcact
     2161 ttgtgaaatc catctcctgc cagatctgtg aacacattct ggctgaccct gtggagacca
     2221 actgtaagca tgtcttttgc cgggtctgca ttctcagatg cctcaaagtc atgggcagct
     2281 attgtccctc ttgccgatat ccatgcttcc ctactgacct ggagagtcca gtgaagtcct
     2341 ttctgagcgt cttgaattcc ctgatggtga aatgtccagc aaaagagtgc aatgaggagg
     2401 tcagtttgga aaaatataat caccacatct caagtcacaa ggaatcaaaa gagatttttg
     2461 tgcacattaa taaagggggc cggccccgcc aacatcttct gtcgctgact cggagagctc
     2521 agaagcaccg gctgagggag ctcaagctgc aagtcaaagc ctttgctgac aaagaagaag
     2581 gtggagatgt gaagtccgtg tgcatgacct tgttcctgct ggctctgagg gcgaggaatg
     2641 agcacaggca agctgatgag ctggaggcca tcatgcaggg aaagggctct ggcctgcagc
     2701 cagctgtttg cttggccatc cgtgtcaaca ccttcctcag ctgcagtcag taccacaaga
     2761 tgtacaggac tgtgaaagcc atcacaggga gacagatttt tcagcctttg catgcccttc
     2821 ggaatgctga gaaggtactt ctgccaggct accaccactt tgagtggcag ccacctctga
     2881 agaatgtgtc ttccagcact gatgttggca ttattgatgg gctgtctgga ctatcatcct
     2941 ctgtggatga ttacccagtg gacaccattg caaagaggtt ccgctatgat tcagctttgg
     3001 tgtctgcttt gatggacatg gaagaagaca tcttggaagg catgagatcc caagaccttg
     3061 atgattacct gaatggcccc ttcactgtgg tggtgaagga gtcttgtgat ggaatgggag
     3121 acgtgagtga gaagcatggg agtgggcctg tagttccaga aaaggcagtc cgtttttcat
     3181 tcacaatcat gaaaattact attgcccaca gctctcagaa tgtgaaagta tttgaagaag
     3241 ccaaacctaa ctctgaactg tgttgcaagc cattgtgcct tatgctggca gatgagtctg
     3301 accacgagac gctgactgcc atcctgagtc ctctcattgc tgagagggag gccatgaaga
     3361 gcagtgaatt aatgcttgag ctgggaggca ttctccggac tttcaagttc atcttcaggg
     3421 gcaccggcta tgatgaaaaa cttgtgcggg aagtggaagg cctcgaggct tctggctcag
     3481 tctacatttg tactctttgt gatgccaccc gtctggaagc ctctcaaaat cttgtcttcc
     3541 actctataac cagaagccat gctgagaacc tggaacgtta tgaggtctgg cgttccaacc
     3601 cttaccatga gtctgtggaa gaactgcggg atcgggtgaa aggggtctca gctaaacctt
     3661 tcattgagac agtcccttcc atagatgcac tccactgtga cattggcaat gcagctgagt
     3721 tctacaagat cttccagcta gagatagggg aagtgtataa gaatcccaat gcttccaaag
     3781 aggaaaggaa aaggtggcag gccacactgg acaagcatct ccggaagaag atgaacctca
     3841 aaccaatcat gaggatgaat ggcaactttg ccaggaagct catgaccaaa gagactgtgg
     3901 atgcagtttg tgagttaatt ccttccgagg agaggcacga ggctctgagg gagctgatgg
     3961 atctttacct gaagatgaaa ccagtatggc gatcatcatg ccctgctaaa gagtgcccag
     4021 aatccctctg ccagtacagt ttcaattcac agcgttttgc tgagctcctt tctacgaagt
     4081 tcaagtatag gtatgaggga aaaatcacca attattttca caaaaccctg gcccatgttc
     4141 ctgaaattat tgagagggat ggctccattg gggcatgggc aagtgaggga aatgagtctg
     4201 gtaacaaact gtttaggcgc ttccggaaaa tgaatgccag gcagtccaaa tgctatgaga
     4261 tggaagatgt cctgaaacac cactggttgt acacctccaa atacctccag aagtttatga
     4321 atgctcataa tgcattaaaa acctctgggt ttaccatgaa ccctcaggca agcttagggg
     4381 acccattagg catagaggac tctctggaaa gccaagattc aatggaattt taagtagggc
     4441 aaccacttat gagttggttt ttgcaattga gtttccctct gggttgcatt gagggcttct
     4501 cctagcaccc tttactgctg tgtatggggc ttcaccatcc aagaggtggt aggttggagt
     4561 aagatgctac agatgctctc aagtcaggaa tagaaactga tgagctgatt gcttgaggct
     4621 tttagtgagt tccgaaaagc aacaggaaaa atcagttatc tgaaagctca gtaactcaga
     4681 acaggagtaa ctgcagggga ccagagatga gcaaagatct gtgtgtgttg gggagctgtc
     4741 atgtaaatca aagccaaggt tgtcaaagaa cagccagtga ggccaggaaa gaaattggtc
     4801 ttgtggtttt catttttttc ccccttgatt gattatattt tgtattgaga tatgataagt
     4861 gccttctatt tcatttttga ataattcttc atttttataa ttttacatat cttggcttgc
     4921 tatataagat tcaaaagagc tttttaaatt tttctaataa tatcttacat ttgtacagca
     4981 tgatgacctt tacaaagtgc tctcaatgca tttacccatt cgttatataa atatgttaca
     5041 tcaggacaac tttgagaaaa tcagtccttt tttatgttta aattatgtat ctattgtaac
     5101 cttcagagtt taggaggtca tctgctgtca tggatttttc aataatgaat ttagaataca
     5161 cctgttagct acagttagtt attaaatctt ctgataatat atgtttactt agctatcaga
     5221 agccaagtat gattctttat ttttactttt tcatttcaag aaatttagag tttccaaatt
     5281 tagagcttct gcatacagtc ttaaagccac agaggcttgt aaaaatatag gttagcttga
     5341 tgtctaaaaa tatatttcat gtcttactga aacattttgc cagactttct ccaaatgaaa
     5401 cctgaatcaa tttttctaaa tctaggtttc atagagtcct ctcctctgca atgtgttatt
     5461 ctttctataa tgatcagttt actttcagtg gattcagaat tgtgtagcag gataaccttg
     5521 tatttttcca tccgctaagt ttagatggag tccaaacgca gtacagcaga agagttaaca
     5581 tttacacagt gctttttacc actgtggaat gttttcacac tcatttttcc ttacaacaat
     5641 tctgaggagt aggtgttgtt attatctcca tttgatgggg gtttaaatga tttgctcaaa
     5701 gtcatttagg ggtaataaat acttggcttg gaaatttaac acagtccttt tgtctccaaa
     5761 gcccttcttc tttccaccac aaattaatca ctatgtttat aaggtagtat cagaattttt
     5821 ttaggattca caactaatca ctatagcaca tgaccttggg attacatttt tatggggcag
     5881 gggtaagcaa gtttttaaat catttgtgtg ctctggctct tttgatagaa gaaagcaaca
     5941 caaaagctcc aaagggcccc ctaaccctct tgtggctcca gttatttgga aactatgatc
     6001 tgcatcctta ggaatctggg atttgccagt tgctggcaat gtagagcagg catggaattt
     6061 tatatgctag tgagtcataa tgatatgtta gtgttaatta gttttttctt cctttgattt
     6121 tattggccat aattgctact cttcatacac agtatatcaa agagcttgat aatttagttg
     6181 tcaaaagtgc atcggcgaca ttatctttaa ttgtatgtat ttggtgcttc ttcagggatt
     6241 gaactcagta tctttcatta aaaaacacag cagttttcct tgctttttat atgcagaata
     6301 tcaaagtcat ttctaattta gttgtcaaaa acatatacat attttaacat tagttttttt
     6361 gaaaactctt ggttttgttt ttttggaaat gagtgggcca ctaagccaca ctttcccttc
     6421 atcctgctta atccttccag catgtctctg cactaataaa cagctaaatt cacataatca
     6481 tcctatttac tgaagcatgg tcatgctggt ttatagattt tttacccatt tctactcttt
     6541 ttctctattg gtggcactgt aaatactttc cagtattaaa ttatcctttt ctaacactgt
     6601 aggaactatt ttgaatgcat gtgactaaga gcatgattta tagcacaacc tttccaataa
     6661 tcccttaatc agatcacatt ttgataaacc ctgggaacat ctggctgcag gaatttcaat
     6721 atgtagaaac gctgcctatg gttttttgcc cttactgttg agactgcaat atcctagacc
     6781 ctagttttat actagagttt tatttttagc aatgcctatt gcaagtgcaa ttatatactc
     6841 cagggaaatt caccacactg aatcgagcat ttgtgtgtgt atgtgtgaag tatatactgg
     6901 gacttcagaa gtgcaatgta tttttctcct gtgaaacctg aatctacaag ttttcctgcc
     6961 aagccactca ggtgcattgc agggaccagt gataatggct gatgaaaatt gatgattggt
     7021 cagtgaggtc aaaaggagcc ttgggattaa taaacatgca ctgagaagca agaggaggag
     7081 aaaaagatgt ctttttcttc caggtgaact ggaatttagt tttgcctcag atttttttcc
     7141 cacaagatac agaagaagat aaagattttt ttggttgaga gtgtgggtct tgcattacat
     7201 caaacagagt tcaaattcca cacagataag aggcaggata tataagcgcc agtggtagtt
     7261 gggaggaata aaccattatt tggatgcagg tggtttttga ttgcaaatat gtgtgtgtct
     7321 tcagtgattg tatgacagat gatgtattct tttgatgtta aaagatttta agtaagagta
     7381 gatacattgt acccatttta cattttctta ttttaactac agtaatctac ataaatatac
     7441 ctcagaaatc atttttggtg attatttttt gttttgtaga attgcacttc agtttatttt
     7501 cttacaaata accttacatt ttgtttaatg gcttccaaga gccttttttt tttttgtatt
     7561 tcagagaaaa ttcaggtacc aggatgcaat ggatttattt gattcagggg acctgtgttt
     7621 ccatgtcaaa tgttttcaaa taaaatgaaa tatgagtttc aatacttttt atattttaat
     7681 atttccattc attaatatta tggttattgt cagcaatttt atgtttgaat atttgaaata
     7741 aaagtttaag atttgaaaa
//
