LOCUS       XM_047426483            7628 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens protein tyrosine phosphatase receptor type
            F (PTPRF), transcript variant X13, mRNA.
ACCESSION   XM_047426483
VERSION     XM_047426483.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7628
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..7628
                     /gene="PTPRF"
                     /gene_synonym="BNAH2; LAR"
                     /note="protein tyrosine phosphatase receptor type F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 269 ESTs, 2883 long SRA reads, 24
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:5792"
                     /db_xref="HGNC:HGNC:9670"
                     /db_xref="MIM:179590"
     CDS             272..5965
                     /gene="PTPRF"
                     /gene_synonym="BNAH2; LAR"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X9"
                     /protein_id="XP_047282439.1"
                     /db_xref="GeneID:5792"
                     /db_xref="HGNC:HGNC:9670"
                     /db_xref="MIM:179590"
                     /translation="MAEASWERSWEASWKRGALKGKPVFIKVPEDQTGLSGGVASFVC
                     QATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS
                     LGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK
                     DFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVR
                     RVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAEELTKEDEMPVGRNVLE
                     LSNVVRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATSVTLTWDSGNS
                     EPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSE
                     AVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRGYRVYYTPDSRRPPN
                     AWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPADF
                     QAEVESDTRIQLSWLLPPQERIIMYELVYWAAEDEDQQHKVTFDPTSSYTLEDLKPDT
                     LYRFQLAARSDMGVGVFTPTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADS
                     RNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGP
                     GPESSPVLVRTDEDVPSGPPRKVEVEPLNSTAVHVYWKLPVPSKQHGQIRGYQVTYVR
                     LENGEPRGLPIIQDVMLAEAQWRPEESEDYETTISGLTPETTYSVTVAAYTTKGDGAR
                     SKPKIVTTTGAVPGRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPN
                     TIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLPSGFPQNLHV
                     TGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTGLKPDT
                     TYDIKVRAWTSKGSGPLSPSIQSRTMPVEQVFAKNFRVAAAMKTSVLLSWEVPDSYKS
                     AVPFKILYNGQSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSSAGGLQHLVSIRTAPD
                     LLPHKPLPASAYIEDGRFDLSMPHVQDPSLVRWFYIVVVPIDRVGGSMLTPRWSTPEE
                     LELDELLEAIEQGGEEQRRRRRQAERLKPYVAAQLDVLPETFTLGDKKNYRGFYNRPL
                     SPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQEEPEMLWVTGPVLAVI
                     LIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVEMRRLNYQTPGMRDHP
                     PIPITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYD
                     HSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATV
                     VMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKR
                     ELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVID
                     AMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNL
                     YAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYEL
                     TRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIV
                     MLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRT
                     IRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITL
                     SIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT"
ORIGIN      
        1 ccccagtgtc agtgccgcac gcgcagctcc agtggagatt tgggcacaca ttggggtagg
       61 atctgctgca gcgcagcttc cccagccagg ctttgtggct tctcaggagg ggaggttgtg
      121 gggccagagg tgtcctgagc cagggcagag gtttttgctg atctcaagtg cgtgtcgcgt
      181 gcctgtcttc aggcaagacc tgcagtgtgg aggcacaggc ttgtgagcag tgaccacagg
      241 gtgtgctggg taggtggcac tgacacaggc catggcagaa gcatcttggg agaggagttg
      301 ggaggcttcc tggaagaggg gagccctgaa gggcaaacct gtcttcatta aagtccctga
      361 ggaccagact gggctgtcag gaggggtagc ctccttcgtg tgccaagcta caggagaacc
      421 caagccgcgc atcacatgga tgaagaaggg gaagaaagtc agctcccagc gcttcgaggt
      481 cattgagttt gatgatgggg cagggtcagt gcttcggatc cagccattgc gggtgcagcg
      541 agatgaagcc atctatgagt gtacagctac taacagcctg ggtgagatca acactagtgc
      601 caagctctca gtgctcgaag aggaacagct gccccctggg ttcccttcca tcgacatggg
      661 gcctcagctg aaggtggtgg agaaggcacg cacagccacc atgctatgtg ccgcaggcgg
      721 aaatccagac cctgagattt cttggttcaa ggacttcctt cctgtagacc ctgccacgag
      781 caacggccgc atcaagcagc tgcgttcagg tgccttgcag atagagagca gtgaggaatc
      841 cgaccaaggc aagtacgagt gtgtggcgac caactcggca ggcacacgtt actcagcccc
      901 tgcgaacctg tatgtgcgag tgcgccgcgt ggctcctcgt ttctccatcc ctcccagcag
      961 ccaggaggtg atgccaggcg gcagcgtgaa cctgacatgc gtggcagtgg gtgcacccat
     1021 gccctacgtg aagtggatga tgggggccga ggagctcacc aaggaggatg agatgccagt
     1081 tggccgcaac gtcctggagc tcagcaatgt cgtacgctct gccaactaca cctgtgtggc
     1141 catctcctcg ctgggcatga tcgaggccac agcccaggtc acagtgaaag ctcttccaaa
     1201 gcctccgatt gatcttgtgg tgacagagac aactgccacc agtgtcaccc tcacctggga
     1261 ctctgggaac tcggagcctg taacctacta tggcatccag taccgcgcag cgggcacgga
     1321 gggccccttt caggaggtgg atggtgtggc caccacccgc tacagcattg gcggcctcag
     1381 ccctttctcg gaatatgcct tccgcgtgct ggcggtgaac agcatcgggc gagggccgcc
     1441 cagcgaggca gtgcgggcac gcacgggaga acaggcgccc tccagcccac cgcgccgcgt
     1501 gcaggcacgc atgctgagcg ccagcaccat gctggtgcag tgggagcctc ccgaggagcc
     1561 caacggcctg gtgcggggat accgcgtcta ctatactccg gactcccgcc gccccccgaa
     1621 cgcctggcac aagcacaaca ccgacgcggg gctcctcacg accgtgggca gcctgctgcc
     1681 tggcatcacc tacagcctgc gcgtgcttgc cttcaccgcc gtgggcgatg gccctcccag
     1741 ccccaccatc caggtcaaga cgcagcaggg agtgcctgcc cagcccgcgg acttccaggc
     1801 cgaggtggag tcggacacca ggatccagct ctcgtggctg ctgccccctc aggagcggat
     1861 catcatgtat gaactggtgt actgggcggc agaggacgaa gaccaacagc acaaggtgac
     1921 cttcgaccca acctcctcct acacactaga ggacctgaag cctgacacac tctaccgctt
     1981 ccagctggct gcacgctcgg atatgggggt gggcgtcttc acccccacca ttgaggcccg
     2041 cacagcccag tccaccccct ccgcccctcc ccagaaggtg atgtgtgtga gcatgggctc
     2101 caccacggtc cgggtaagtt gggtcccgcc gcctgccgac agccgcaacg gcgttatcac
     2161 ccagtactcc gtggcctacg aggcggtgga cggcgaggac cgcgggcggc atgtggtgga
     2221 tggcatcagc cgtgagcact ccagctggga cctggtgggc ctggagaagt ggacggagta
     2281 ccgggtgtgg gtgcgggcac acacagacgt gggccccggc cccgagagca gcccggtgct
     2341 ggtgcgcacc gatgaggacg tgcccagcgg gcctccgcgg aaggtggagg tggagccact
     2401 gaactccact gctgtgcatg tctactggaa gctgcctgtc cccagcaagc agcatggcca
     2461 gatccgcggc taccaggtca cctacgtgcg gctggagaat ggcgagcccc gtggactccc
     2521 catcatccaa gacgtcatgc tagccgaggc ccagtggcgg ccagaggagt ccgaggacta
     2581 tgaaaccact atcagcggcc tgaccccgga gaccacctac tccgttactg ttgctgccta
     2641 taccaccaag ggggatggtg cccgcagcaa gcccaaaatt gtcactacaa caggtgcagt
     2701 cccaggccgg cccaccatga tgatcagcac cacggccatg aacactgcgc tgctccagtg
     2761 gcacccaccc aaggaactgc ctggcgagct gctgggctac cggctgcagt actgccgggc
     2821 cgacgaggcg cggcccaaca ccatagattt cggcaaggat gaccagcact tcacagtcac
     2881 cggcctgcac aaggggacca cctacatctt ccggcttgct gccaagaacc gggctggctt
     2941 gggtgaggag ttcgagaagg agatcaggac ccccgaggac ctgcccagcg gcttccccca
     3001 aaacctgcat gtgacaggac tgaccacgtc taccacagaa ctggcctggg acccgccagt
     3061 gctggcggag aggaacgggc gcatcatcag ctacaccgtg gtgttccgag acatcaacag
     3121 ccaacaggag ctgcagaaca tcacgacaga cacccgcttt acccttactg gcctcaagcc
     3181 agacaccact tacgacatca aggtccgcgc atggaccagc aaaggctctg gcccactcag
     3241 ccccagcatc cagtcccgga ccatgccggt ggagcaagtg tttgccaaga acttccgggt
     3301 ggcggctgca atgaagacgt ctgtgctgct cagctgggag gttcccgact cctataagtc
     3361 agctgtgccc tttaagattc tgtacaatgg gcagagtgtg gaggtggacg ggcactcgat
     3421 gcggaagctg atcgcagacc tgcagcccaa cacagagtac tcgtttgtgc tgatgaaccg
     3481 tggcagcagc gcagggggcc tgcagcacct ggtgtccatc cgcacagccc ccgacctcct
     3541 gcctcacaag ccgctgcctg cctctgccta catagaggac ggccgcttcg atctctccat
     3601 gccccatgtg caagacccct cgcttgtcag gtggttctac attgttgtgg tgcccattga
     3661 ccgtgtgggc gggagcatgc tgacgccaag gtggagcaca cccgaggaac tggagctgga
     3721 cgagcttcta gaagccatcg agcaaggcgg agaggagcag cggcggcggc ggcggcaggc
     3781 agaacgtctg aagccatatg tggctgctca actggatgtg ctcccggaga cctttacctt
     3841 gggggacaag aagaactacc ggggcttcta caaccggccc ctgtctccgg acttgagcta
     3901 ccagtgcttt gtgcttgcct ccttgaagga acccatggac cagaagcgct atgcctccag
     3961 cccctactcg gatgagatcg tggtccaggt gacaccagcc cagcagcagg aggagccgga
     4021 gatgctgtgg gtgacgggtc ccgtgctggc agtcatcctc atcatcctca ttgtcatcgc
     4081 catcctcttg ttcaaaagga aaaggaccca ctctccgtcc tctaaggatg agcagtcgat
     4141 cggactgaag gactccttgc tggcccactc ctctgaccct gtggagatgc ggaggctcaa
     4201 ctaccagacc ccaggtatgc gagaccaccc acccatcccc atcaccgacc tggcggacaa
     4261 catcgagcgc ctcaaagcca acgatggcct caagttctcc caggagtatg agtccatcga
     4321 ccctggacag cagttcacgt gggagaattc aaacctggag gtgaacaagc ccaagaaccg
     4381 ctatgcgaat gtcatcgcct acgaccactc tcgagtcatc cttacctcta tcgatggcgt
     4441 ccccgggagt gactacatca atgccaacta catcgatggc taccgcaagc agaatgccta
     4501 catcgccacg cagggccccc tgcccgagac catgggtgat ttctggagga tggtgtggga
     4561 acagcgcacg gccactgtgg tcatgatgac acggctggag gagaagtccc gggtaaaatg
     4621 tgatcagtac tggccagccc gtggcaccga gacctgtggc cttattcagg tgaccctgtt
     4681 ggacacagtg gagctggcca catacactgt gcgcaccttc gcactccaca agagtggctc
     4741 cagtgagaag cgcgagctgc gtcagtttca gttcatggcc tggccagacc atggagttcc
     4801 tgagtaccca actcccatcc tggccttcct acgacgggtc aaggcctgca accccctaga
     4861 cgcagggccc atggtggtgc actgcagcgc gggcgtgggc cgcaccggct gcttcatcgt
     4921 gattgatgcc atgttggagc ggatgaagca cgagaagacg gtggacatct atggccacgt
     4981 gacctgcatg cgatcacaga ggaactacat ggtgcagacg gaggaccagt acgtgttcat
     5041 ccatgaggcg ctgctggagg ctgccacgtg cggccacaca gaggtgcctg cccgcaacct
     5101 gtatgcccac atccagaagc tgggccaagt gcctccaggg gagagtgtga ccgccatgga
     5161 gctcgagttc aagttgctgg ccagctccaa ggcccacacg tcccgcttca tcagcgccaa
     5221 cctgccctgc aacaagttca agaaccggct ggtgaacatc atgccctacg aattgacccg
     5281 tgtgtgtctg cagcccatcc gtggtgtgga gggctctgac tacatcaatg ccagcttcct
     5341 ggatggttat agacagcaga aggcctacat agctacacag gggcctctgg cagagagcac
     5401 cgaggacttc tggcgcatgc tatgggagca caattccacc atcatcgtca tgctgaccaa
     5461 gcttcgggag atgggcaggg agaaatgcca ccagtactgg ccagcagagc gctctgctcg
     5521 ctaccagtac tttgttgttg acccgatggc tgagtacaac atgccccagt atatcctgcg
     5581 tgagttcaag gtcacggatg cccgggatgg gcagtcaagg acaatccggc agttccagtt
     5641 cacagactgg ccagagcagg gcgtgcccaa gacaggcgag ggattcattg acttcatcgg
     5701 gcaggtgcat aagaccaagg agcagtttgg acaggatggg cctatcacgg tgcactgcag
     5761 tgctggcgtg ggccgcaccg gggtgttcat cactctgagc atcgtcctgg agcgcatgcg
     5821 ctacgagggc gtggtcgaca tgtttcagac cgtgaagacc ctgcgtacac agcgtcctgc
     5881 catggtgcag acagaggacc agtatcagct gtgctaccgt gcggccctgg agtacctcgg
     5941 cagctttgac cactatgcaa cgtaactacc gctcccctct cctccgccac ccccgccgtg
     6001 gggctccgga ggggacccag ctcctctgag ccataccgac catcgtccag ccctcctacg
     6061 cagatgctgt cactggcaga gcacagccca cggggatcac agcgtttcag gaacgttgcc
     6121 acaccaatca gagagcctag aacatccctg ggcaagtgga tggcccagca ggcaggcact
     6181 gtggcccttc tgtccaccag acccacctgg agcccgcttc aagctctctg ttgcgctccc
     6241 gcatttctca tgcttcttct catggggtgg ggttggggca aagcctcctt tttaatacat
     6301 taagtggggt agactgaggg attttagcct cttccctctg atttttcctt tcgcgaatcc
     6361 gtatctgcag aatgggccac tgtaggggtt ggggtttatt ttgttttgtt tttttttttc
     6421 ttgagttcac tttggatcct tattttgtat gacttctgct gaaggacaga acattgcctt
     6481 cctcgtgcag agctggggct gccagcctga gcggaggctc ggccgtgggc cgggaggcag
     6541 tgctgatccg gctgctcctc cagcccttca gacgagatcc tgtttcagct aaatgcaggg
     6601 aaactcaatg tttttttaag ttttgttttc cctttaaagc ctttttttag gccacattga
     6661 cagtggtggg cggggagaag atagggaaca ctcatccctg gtcgtctatc ccagtgtgtg
     6721 tttaacattc acagcccaga accacagatg tgtctgggag agcctggcaa ggcattcctc
     6781 atcaccatcg tgtttgcaaa ggttaaaaca aaaacaaaaa accacaaaaa taaaaaacaa
     6841 aaaaaacaaa aaacccaaga aaaaaaaaaa gagtcagccc ttggcttctg cttcaaaccc
     6901 tcaagagggg aagcaactcc gtgtgcctgg ggttcccgag ggagctgctg gctgacctgg
     6961 gcccacagag cctggctttg gtccccagca ttgcagtatg gtgtggtgtt tgtaggctgt
     7021 ggggtctggc tgtgtggcca aggtgaatag cacaggttag ggtgtgtgcc acaccccatg
     7081 cacctcaggg ccaagcgggg gcgtggctgg cctttcaggt ccaggccagt gggcctggta
     7141 gcacatgtct gtcctcagag caggggccag atgattttcc tccctggttt gcagctgttt
     7201 tcaaagcccc cgataatcgc tcttttccac tccaagatgc cctcataaac caatgtggca
     7261 agactactgg acttctatca atggtactct aatcagtcct tattatccca gcttgctgag
     7321 gggcagggag agcgcctctt cctctgggca gcgctatcta gataggtaag tgggggcggg
     7381 gaagggtgca tagctgtttt agctgaggga cgtggtgccg acgtccccaa acctagctag
     7441 gctaagtcaa gatcaacatt ccagggttgg taatgttgga tgatgaaaca ttcattttta
     7501 ccttgtggat gctagtgctg tagagttcac tgttgtacac agtctgtttt ctatttgtta
     7561 agaaaaacta cagcatcatt gcataattct tgatggtaat aaatttgaat aatcagattt
     7621 cttacaaa
//
