LOCUS       XM_006710799            7459 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens protein tyrosine phosphatase receptor type
            F (PTPRF), transcript variant X15, mRNA.
ACCESSION   XM_006710799
VERSION     XM_006710799.4
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_006710799.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7459
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..7459
                     /gene="PTPRF"
                     /gene_synonym="BNAH2; LAR"
                     /note="protein tyrosine phosphatase receptor type F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 239 ESTs, 1900 long SRA reads, 18
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 37 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:5792"
                     /db_xref="HGNC:HGNC:9670"
                     /db_xref="MIM:179590"
     CDS             334..5796
                     /gene="PTPRF"
                     /gene_synonym="BNAH2; LAR"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X11"
                     /protein_id="XP_006710862.1"
                     /db_xref="GeneID:5792"
                     /db_xref="HGNC:HGNC:9670"
                     /db_xref="MIM:179590"
                     /translation="MAPEPAPGRTMVPLVPALVMLGLVAGAHGDSKPVFIKVPEDQTG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGG
                     NPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYS
                     APANLYVRDQREVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAEEL
                     TKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTET
                     TATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFR
                     VLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRG
                     YRVYYTPDSRRPPNAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQ
                     VKTQQGVPAQPADFQAEVESDTRIQLSWLLPPQERIIMYELVYWAAEDEDQQHKVTFD
                     PTSSYTLEDLKPDTLYRFQLAARSDMGVGVFTPTIEARTAQSMPSGPPRKVEVEPLNS
                     TAVHVYWKLPVPSKQHGQIRGYQVTYVRLENGEPRGLPIIQDVMLAEAQWRPEESEDY
                     ETTISGLTPETTYSVTVAAYTTKGDGARSKPKIVTTTGAVPGRPTMMISTTAMNTALL
                     QWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKN
                     RAGLGEEFEKEIRTPEDLPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVV
                     FRDINSQQELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTMPVEQ
                     VFAKNFRVAAAMKTSVLLSWEVPDSYKSAVPFKILYNGQSVEVDGHSMRKLIADLQPN
                     TEYSFVLMNRGSSAGGLQHLVSIRTAPDLLPHKPLPASAYIEDGRFDLSMPHVQDPSL
                     VRWFYIVVVPIDRVGGSMLTPRWSTPEELELDELLEAIEQGGEEQRRRRRQAERLKPY
                     VAAQLDVLPETFTLGDKKNYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSD
                     EIVVQVTPAQQQEEPEMLWVTGPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGL
                     KDSLLAHSSDPVEMRRLNYQTPGSSVPSCPNTSSMRDHPPIPITDLADNIERLKANDG
                     LKFSQEYESIDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYIN
                     ANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWP
                     ARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYP
                     TPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVT
                     CMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAM
                     ELEFKLLASSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINA
                     SFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPA
                     ERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGE
                     GFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTV
                     KTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT"
ORIGIN      
        1 ggcgggagcg gtggcggcgg cagaggcggc ggctccagct tcggctccgg ctcgggctcg
       61 ggctccggct ccggctccgg ctccggctcc agctcgggtg gcggtggcgg gagcgggacc
      121 aggtggaggc ggcggcggca gaggagtggg agcagcggcc ctagcggctt gcggggggac
      181 atgcggaccg acggcccctg gataggcgga aggagtggag gccctggtgc ccggcccttg
      241 gtgctgagta tccagcaaga gtgaccgggg tgaagaagca aagactcggt tgattgtcct
      301 gggctgtggc tggctgtgga gctagagccc tggatggccc ctgagccagc cccagggagg
      361 acgatggtgc cccttgtgcc tgcactggtg atgcttggtt tggtggcagg cgcccatggt
      421 gacagcaaac ctgtcttcat taaagtccct gaggaccaga ctgggctgtc aggaggggta
      481 gcctccttcg tgtgccaagc tacaggagaa cccaagccgc gcatcacatg gatgaagaag
      541 gggaagaaag tcagctccca gcgcttcgag gtcattgagt ttgatgatgg ggcagggtca
      601 gtgcttcgga tccagccatt gcgggtgcag cgagatgaag ccatctatga gtgtacagct
      661 actaacagcc tgggtgagat caacactagt gccaagctct cagtgctcga agaggaacag
      721 ctgccccctg ggttcccttc catcgacatg gggcctcagc tgaaggtggt ggagaaggca
      781 cgcacagcca ccatgctatg tgccgcaggc ggaaatccag accctgagat ttcttggttc
      841 aaggacttcc ttcctgtaga ccctgccacg agcaacggcc gcatcaagca gctgcgttca
      901 ggtgccttgc agatagagag cagtgaggaa tccgaccaag gcaagtacga gtgtgtggcg
      961 accaactcgg caggcacacg ttactcagcc cctgcgaacc tgtatgtgcg agatcagcga
     1021 gaagtgcgcc gcgtggctcc tcgtttctcc atccctccca gcagccagga ggtgatgcca
     1081 ggcggcagcg tgaacctgac atgcgtggca gtgggtgcac ccatgcccta cgtgaagtgg
     1141 atgatggggg ccgaggagct caccaaggag gatgagatgc cagttggccg caacgtcctg
     1201 gagctcagca atgtcgtacg ctctgccaac tacacctgtg tggccatctc ctcgctgggc
     1261 atgatcgagg ccacagccca ggtcacagtg aaagctcttc caaagcctcc gattgatctt
     1321 gtggtgacag agacaactgc caccagtgtc accctcacct gggactctgg gaactcggag
     1381 cctgtaacct actatggcat ccagtaccgc gcagcgggca cggagggccc ctttcaggag
     1441 gtggatggtg tggccaccac ccgctacagc attggcggcc tcagcccttt ctcggaatat
     1501 gccttccgcg tgctggcggt gaacagcatc gggcgagggc cgcccagcga ggcagtgcgg
     1561 gcacgcacgg gagaacaggc gccctccagc ccaccgcgcc gcgtgcaggc acgcatgctg
     1621 agcgccagca ccatgctggt gcagtgggag cctcccgagg agcccaacgg cctggtgcgg
     1681 ggataccgcg tctactatac tccggactcc cgccgccccc cgaacgcctg gcacaagcac
     1741 aacaccgacg cggggctcct cacgaccgtg ggcagcctgc tgcctggcat cacctacagc
     1801 ctgcgcgtgc ttgccttcac cgccgtgggc gatggccctc ccagccccac catccaggtc
     1861 aagacgcagc agggagtgcc tgcccagccc gcggacttcc aggccgaggt ggagtcggac
     1921 accaggatcc agctctcgtg gctgctgccc cctcaggagc ggatcatcat gtatgaactg
     1981 gtgtactggg cggcagagga cgaagaccaa cagcacaagg tgaccttcga cccaacctcc
     2041 tcctacacac tagaggacct gaagcctgac acactctacc gcttccagct ggctgcacgc
     2101 tcggatatgg gggtgggcgt cttcaccccc accattgagg cccgcacagc ccagtccatg
     2161 cccagcgggc ctccgcggaa ggtggaggtg gagccactga actccactgc tgtgcatgtc
     2221 tactggaagc tgcctgtccc cagcaagcag catggccaga tccgcggcta ccaggtcacc
     2281 tacgtgcggc tggagaatgg cgagccccgt ggactcccca tcatccaaga cgtcatgcta
     2341 gccgaggccc agtggcggcc agaggagtcc gaggactatg aaaccactat cagcggcctg
     2401 accccggaga ccacctactc cgttactgtt gctgcctata ccaccaaggg ggatggtgcc
     2461 cgcagcaagc ccaaaattgt cactacaaca ggtgcagtcc caggccggcc caccatgatg
     2521 atcagcacca cggccatgaa cactgcgctg ctccagtggc acccacccaa ggaactgcct
     2581 ggcgagctgc tgggctaccg gctgcagtac tgccgggccg acgaggcgcg gcccaacacc
     2641 atagatttcg gcaaggatga ccagcacttc acagtcaccg gcctgcacaa ggggaccacc
     2701 tacatcttcc ggcttgctgc caagaaccgg gctggcttgg gtgaggagtt cgagaaggag
     2761 atcaggaccc ccgaggacct gcccagcggc ttcccccaaa acctgcatgt gacaggactg
     2821 accacgtcta ccacagaact ggcctgggac ccgccagtgc tggcggagag gaacgggcgc
     2881 atcatcagct acaccgtggt gttccgagac atcaacagcc aacaggagct gcagaacatc
     2941 acgacagaca cccgctttac ccttactggc ctcaagccag acaccactta cgacatcaag
     3001 gtccgcgcat ggaccagcaa aggctctggc ccactcagcc ccagcatcca gtcccggacc
     3061 atgccggtgg agcaagtgtt tgccaagaac ttccgggtgg cggctgcaat gaagacgtct
     3121 gtgctgctca gctgggaggt tcccgactcc tataagtcag ctgtgccctt taagattctg
     3181 tacaatgggc agagtgtgga ggtggacggg cactcgatgc ggaagctgat cgcagacctg
     3241 cagcccaaca cagagtactc gtttgtgctg atgaaccgtg gcagcagcgc agggggcctg
     3301 cagcacctgg tgtccatccg cacagccccc gacctcctgc ctcacaagcc gctgcctgcc
     3361 tctgcctaca tagaggacgg ccgcttcgat ctctccatgc cccatgtgca agacccctcg
     3421 cttgtcaggt ggttctacat tgttgtggtg cccattgacc gtgtgggcgg gagcatgctg
     3481 acgccaaggt ggagcacacc cgaggaactg gagctggacg agcttctaga agccatcgag
     3541 caaggcggag aggagcagcg gcggcggcgg cggcaggcag aacgtctgaa gccatatgtg
     3601 gctgctcaac tggatgtgct cccggagacc tttaccttgg gggacaagaa gaactaccgg
     3661 ggcttctaca accggcccct gtctccggac ttgagctacc agtgctttgt gcttgcctcc
     3721 ttgaaggaac ccatggacca gaagcgctat gcctccagcc cctactcgga tgagatcgtg
     3781 gtccaggtga caccagccca gcagcaggag gagccggaga tgctgtgggt gacgggtccc
     3841 gtgctggcag tcatcctcat catcctcatt gtcatcgcca tcctcttgtt caaaaggaaa
     3901 aggacccact ctccgtcctc taaggatgag cagtcgatcg gactgaagga ctccttgctg
     3961 gcccactcct ctgaccctgt ggagatgcgg aggctcaact accagacccc aggttccagt
     4021 gtccccagtt gcccgaatac ctcaagtatg cgagaccacc cacccatccc catcaccgac
     4081 ctggcggaca acatcgagcg cctcaaagcc aacgatggcc tcaagttctc ccaggagtat
     4141 gagtccatcg accctggaca gcagttcacg tgggagaatt caaacctgga ggtgaacaag
     4201 cccaagaacc gctatgcgaa tgtcatcgcc tacgaccact ctcgagtcat ccttacctct
     4261 atcgatggcg tccccgggag tgactacatc aatgccaact acatcgatgg ctaccgcaag
     4321 cagaatgcct acatcgccac gcagggcccc ctgcccgaga ccatgggtga tttctggagg
     4381 atggtgtggg aacagcgcac ggccactgtg gtcatgatga cacggctgga ggagaagtcc
     4441 cgggtaaaat gtgatcagta ctggccagcc cgtggcaccg agacctgtgg ccttattcag
     4501 gtgaccctgt tggacacagt ggagctggcc acatacactg tgcgcacctt cgcactccac
     4561 aagagtggct ccagtgagaa gcgcgagctg cgtcagtttc agttcatggc ctggccagac
     4621 catggagttc ctgagtaccc aactcccatc ctggccttcc tacgacgggt caaggcctgc
     4681 aaccccctag acgcagggcc catggtggtg cactgcagcg cgggcgtggg ccgcaccggc
     4741 tgcttcatcg tgattgatgc catgttggag cggatgaagc acgagaagac ggtggacatc
     4801 tatggccacg tgacctgcat gcgatcacag aggaactaca tggtgcagac ggaggaccag
     4861 tacgtgttca tccatgaggc gctgctggag gctgccacgt gcggccacac agaggtgcct
     4921 gcccgcaacc tgtatgccca catccagaag ctgggccaag tgcctccagg ggagagtgtg
     4981 accgccatgg agctcgagtt caagttgctg gccagctcca aggcccacac gtcccgcttc
     5041 atcagcgcca acctgccctg caacaagttc aagaaccggc tggtgaacat catgccctac
     5101 gaattgaccc gtgtgtgtct gcagcccatc cgtggtgtgg agggctctga ctacatcaat
     5161 gccagcttcc tggatggtta tagacagcag aaggcctaca tagctacaca ggggcctctg
     5221 gcagagagca ccgaggactt ctggcgcatg ctatgggagc acaattccac catcatcgtc
     5281 atgctgacca agcttcggga gatgggcagg gagaaatgcc accagtactg gccagcagag
     5341 cgctctgctc gctaccagta ctttgttgtt gacccgatgg ctgagtacaa catgccccag
     5401 tatatcctgc gtgagttcaa ggtcacggat gcccgggatg ggcagtcaag gacaatccgg
     5461 cagttccagt tcacagactg gccagagcag ggcgtgccca agacaggcga gggattcatt
     5521 gacttcatcg ggcaggtgca taagaccaag gagcagtttg gacaggatgg gcctatcacg
     5581 gtgcactgca gtgctggcgt gggccgcacc ggggtgttca tcactctgag catcgtcctg
     5641 gagcgcatgc gctacgaggg cgtggtcgac atgtttcaga ccgtgaagac cctgcgtaca
     5701 cagcgtcctg ccatggtgca gacagaggac cagtatcagc tgtgctaccg tgcggccctg
     5761 gagtacctcg gcagctttga ccactatgca acgtaactac cgctcccctc tcctccgcca
     5821 cccccgccgt ggggctccgg aggggaccca gctcctctga gccataccga ccatcgtcca
     5881 gccctcctac gcagatgctg tcactggcag agcacagccc acggggatca cagcgtttca
     5941 ggaacgttgc cacaccaatc agagagccta gaacatccct gggcaagtgg atggcccagc
     6001 aggcaggcac tgtggccctt ctgtccacca gacccacctg gagcccgctt caagctctct
     6061 gttgcgctcc cgcatttctc atgcttcttc tcatggggtg gggttggggc aaagcctcct
     6121 ttttaataca ttaagtgggg tagactgagg gattttagcc tcttccctct gatttttcct
     6181 ttcgcgaatc cgtatctgca gaatgggcca ctgtaggggt tggggtttat tttgttttgt
     6241 tttttttttt cttgagttca ctttggatcc ttattttgta tgacttctgc tgaaggacag
     6301 aacattgcct tcctcgtgca gagctggggc tgccagcctg agcggaggct cggccgtggg
     6361 ccgggaggca gtgctgatcc ggctgctcct ccagcccttc agacgagatc ctgtttcagc
     6421 taaatgcagg gaaactcaat gtttttttaa gttttgtttt ccctttaaag ccttttttta
     6481 ggccacattg acagtggtgg gcggggagaa gatagggaac actcatccct ggtcgtctat
     6541 cccagtgtgt gtttaacatt cacagcccag aaccacagat gtgtctggga gagcctggca
     6601 aggcattcct catcaccatc gtgtttgcaa aggttaaaac aaaaacaaaa aaccacaaaa
     6661 ataaaaaaca aaaaaaacaa aaaacccaag aaaaaaaaaa agagtcagcc cttggcttct
     6721 gcttcaaacc ctcaagaggg gaagcaactc cgtgtgcctg gggttcccga gggagctgct
     6781 ggctgacctg ggcccacaga gcctggcttt ggtccccagc attgcagtat ggtgtggtgt
     6841 ttgtaggctg tggggtctgg ctgtgtggcc aaggtgaata gcacaggtta gggtgtgtgc
     6901 cacaccccat gcacctcagg gccaagcggg ggcgtggctg gcctttcagg tccaggccag
     6961 tgggcctggt agcacatgtc tgtcctcaga gcaggggcca gatgattttc ctccctggtt
     7021 tgcagctgtt ttcaaagccc ccgataatcg ctcttttcca ctccaagatg ccctcataaa
     7081 ccaatgtggc aagactactg gacttctatc aatggtactc taatcagtcc ttattatccc
     7141 agcttgctga ggggcaggga gagcgcctct tcctctgggc agcgctatct agataggtaa
     7201 gtgggggcgg ggaagggtgc atagctgttt tagctgaggg acgtggtgcc gacgtcccca
     7261 aacctagcta ggctaagtca agatcaacat tccagggttg gtaatgttgg atgatgaaac
     7321 attcattttt accttgtgga tgctagtgct gtagagttca ctgttgtaca cagtctgttt
     7381 tctatttgtt aagaaaaact acagcatcat tgcataattc ttgatggtaa taaatttgaa
     7441 taatcagatt tcttacaaa
//
