LOCUS       XM_017016467            3134 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens protein tyrosine phosphatase receptor type
            E (PTPRE), transcript variant X1, mRNA.
ACCESSION   XM_017016467
VERSION     XM_017016467.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000010.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017016467.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="10"
     gene            1..3134
                     /gene="PTPRE"
                     /gene_synonym="HPTPE; PTPE; R-PTP-EPSILON"
                     /note="protein tyrosine phosphatase receptor type E;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 19 ESTs, 33 long SRA reads, 14
                     Proteins, and 77% coverage of the annotated genomic
                     feature by RNAseq alignments, including 19 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:5791"
                     /db_xref="HGNC:HGNC:9669"
                     /db_xref="MIM:600926"
     CDS             155..2317
                     /gene="PTPRE"
                     /gene_synonym="HPTPE; PTPE; R-PTP-EPSILON"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase
                     epsilon isoform X1"
                     /protein_id="XP_016871956.1"
                     /db_xref="GeneID:5791"
                     /db_xref="HGNC:HGNC:9669"
                     /db_xref="MIM:600926"
                     /translation="MRSLRCSAICATRPAPPRSTMEPLCPLLLVGFSLPLARALRGNE
                     TTADSNETTTTSGPPDPGASQPLLAWLLLPLLLLLLVLLLAAYFFRFRKQRKAVVSTS
                     DKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVEHLEEEIRIRSADDCKQFREEFN
                     SLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSQLDGIPCSDYINASYIDGY
                     KEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTY
                     GNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGML
                     KFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRN
                     QRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEF
                     RKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFID
                     GYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSV
                     THGEITIEIKNDTLSEAISIRDFLVTLNQPQARQEEQVRVVRQFHFHGWPEIGIPAEG
                     KGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAV
                     KSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK"
ORIGIN      
        1 ggacaaattt cctgctaggc tgcggacagc gggcggcagg agccggcgcg agcggcttca
       61 ggaacccacg gcctctgcgc gtccccgcga cccttcttcg cgcccggcga agacagccgg
      121 gcgccccgga gggcggcggg caggcgcccg ggagatgcgg agcctccgct gcagcgcgat
      181 ctgcgcgacc agaccggccc ccccgaggtc caccatggag cccttgtgtc cactcctgct
      241 ggtgggtttt agcttgccgc tcgccagggc tctcaggggc aacgagacca ctgccgacag
      301 caacgagaca accacgacct caggccctcc ggacccgggc gcctcccagc cgctgctggc
      361 ctggctgcta ctgccgctgc tgctcctcct cctcgtgctc cttctcgccg cctacttctt
      421 caggttcagg aagcagagga aagctgtggt cagcaccagc gacaagaaga tgcccaacgg
      481 aatcttggag gagcaagagc agcaaagggt gatgctgctc agcaggtcac cctcagggcc
      541 caagaagtat tttcccatcc ccgtggagca cctggaggag gagatccgta tcagatccgc
      601 cgacgactgc aagcagtttc gggaggagtt caactcattg ccatctggac acatacaagg
      661 aacttttgaa ctggcaaata aagaagaaaa cagagaaaaa aacagatatc ccaacatcct
      721 tcccaatgac cattctaggg tgattctgag ccaactggat ggaattccct gttcagacta
      781 catcaatgct tcctacatag atggttacaa agagaagaat aaattcatag cagctcaagg
      841 tcccaaacag gaaacggtta acgacttctg gagaatggtc tgggagcaaa agtctgcgac
      901 catcgtcatg ttaacaaact tgaaagaaag gaaagaggaa aagtgccatc agtactggcc
      961 cgaccaaggc tgctggacct atggaaacat ccgggtgtgc gtggaggact gcgtggtttt
     1021 ggtcgactac accatccgga agttctgcat acagccacag ctccccgacg gctgcaaagc
     1081 ccccaggctg gtctcacagc tgcacttcac cagctggccc gacttcggag tgccttttac
     1141 ccccattggg atgctgaagt tcctcaagaa agtaaagacg ctcaaccccg tgcacgctgg
     1201 gcccatcgtg gtccactgta gcgcgggcgt gggccggacg ggcaccttca ttgtgatcga
     1261 tgccatgatg gccatgatgc acgcggagca gaaggtggat gtgtttgaat ttgtgtctcg
     1321 aatccgtaat cagcgccctc agatggttca aacggatatg cagtacacgt tcatctacca
     1381 agccttactc gagtactacc tctacgggga cacagagctg gacgtgtcct ccctggagaa
     1441 gcacctgcag accatgcacg gcaccaccac ccacttcgac aagatcgggc tggaggagga
     1501 gttcaggaaa ttgacaaatg tccggatcat gaaggagaac atgaggacgg gcaacttgcc
     1561 ggcaaacatg aagaaggcca gggtcatcca gatcatcccg tatgacttca accgagtgat
     1621 cctttccatg aaaaggggtc aagaatacac agactacatc aacgcatcct tcatagacgg
     1681 ctaccgacag aaggactatt tcatcgccac ccaggggcca ctggcacaca cggttgagga
     1741 cttctggagg atgatctggg aatggaaatc ccacactatc gtgatgctga cggaggtgca
     1801 ggagagagag caggataaat gctaccagta ttggccaacc gagggctcag ttactcatgg
     1861 agaaataacg attgagataa agaatgatac cctttcagaa gccatcagta tacgagactt
     1921 tctggtcact ctcaatcagc cccaggcccg ccaggaggag caggtccgag tagtgcgcca
     1981 gtttcacttc cacggctggc ctgagatcgg gattcccgcc gagggcaaag gcatgattga
     2041 cctcatcgca gccgtgcaga agcagcagca gcagacaggc aaccacccca tcaccgtgca
     2101 ctgcagtgcc ggagctgggc gaacaggtac attcatagcc ctcagcaaca ttttggagcg
     2161 agtaaaagcc gagggacttt tagatgtatt tcaagctgtg aagagtttac gacttcagag
     2221 accacatatg gtgcaaaccc tggaacagta tgaattctgc tacaaagtgg tacaagattt
     2281 tattgatata ttttctgatt atgctaattt caaatgaaga ttcctgcctt aaaatatttt
     2341 ttaatttaat ggaacaaagg agaagccact ttccccagga cgcaagactc tcccctccac
     2401 tgtccgggac agcgttcgcc ctttagcggg gaggtcatta cagcctcatg gcctctacca
     2461 aggccccaga tcacaggatc tcctgggcct tggagcacct cacgctgggg gaatcaatcc
     2521 ctgagggact cagaatcttc tccgtgcaac ctggaaagtt catctcttgt ttccttcagt
     2581 caaagaaagt ccattgtaca taacaaaaca gcccccaaac agcccagtgc cgacaccatt
     2641 gttcctttca cactttcctt tgttgcatgc agttgggttc aaatgccaaa tagtgattag
     2701 aagacgacca ttctgatctg tgtgtgatct ggtcactatg tgactgcctt tacggtttct
     2761 ctccatgtgc tatatgaatg aagaatgcat accagtgttt taaaaggtat ttttatgtgt
     2821 ttttaaacac ttttttaaat gagcctgaca cctgtgtttc agcatttgga gacatcccca
     2881 tgttattctt ttaagtgtat aattactgat acttttttgt ttgtttgttt aactaagttg
     2941 tgtttaactt atgtgcagtc tttataatgt atgtatgtta ttacagtttc aactatcata
     3001 ttttctttga ttacatttat aatttgatct tgctctgatt ataatgccag tgaatgttgc
     3061 tgaactcttt gtatatgcaa attgcaagat ttaaaccatt ctgatgcaag gataaacctt
     3121 tactttgact acca
//
