LOCUS       XM_047424273            8809 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens polypyrimidine tract binding protein 3
            (PTBP3), transcript variant X9, mRNA.
ACCESSION   XM_047424273
VERSION     XM_047424273.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000009.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8809
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
     gene            1..8809
                     /gene="PTBP3"
                     /gene_synonym="ROD1"
                     /note="polypyrimidine tract binding protein 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 28 ESTs, 2760 long SRA reads, 4 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9991"
                     /db_xref="HGNC:HGNC:10253"
                     /db_xref="MIM:607527"
     CDS             1300..2673
                     /gene="PTBP3"
                     /gene_synonym="ROD1"
                     /codon_start=1
                     /product="polypyrimidine tract-binding protein 3 isoform
                     X8"
                     /protein_id="XP_047280229.1"
                     /db_xref="GeneID:9991"
                     /db_xref="HGNC:HGNC:10253"
                     /db_xref="MIM:607527"
                     /translation="MAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTD
                     NLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEV
                     LHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDF
                     SKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAP
                     AIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLIT
                     PHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATL
                     SKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVT
                     VDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRV
                     SFSKSTI"
ORIGIN      
        1 actggtcgta cggtgacaat caggctcctg tcggcgccta gcgtctgggc agcgtcagcc
       61 gctacgtcca ccttttccct gtctctaggg gtttctcctc gcgccgctgt gttccagcgc
      121 cggctccgag ctgggagggt gactgagccc tgagcttggg ccctccgaga ggtgcgttag
      181 ctctgggtct tcttgcccct acgcccgagc ctggcgttct ctcggccccc tcttaggaac
      241 gctagccctg ggcagaaatt gcctttgtgg ctgaagtcgg ccagcgtcgc gtttccactc
      301 tcccgccgaa tctggaccca agccagcctt cccttgtgca tcggtagata gcttgtgtta
      361 aggcgccagc ttcttggaac agagctctct gcaaaagtcg cgctgaagaa ttcatagtca
      421 aaagctgaac ttgcagaagt ttctacttct ggaatgagtg ttgaaatgag atcaattctg
      481 acattcagtt tcgcttttgg gattatgcct tggactaact cagctactct gatgagctaa
      541 agactgtagt atatttgaag gaagacacga ggaactgttt tgtattttgt agggatagaa
      601 caggaccttg aggagattat tatatgaaga ctagttaaag aaactagcct ggagatggct
      661 tatgtactct ctcctttgtt tttgttttgt tttttgagac ggagtctcgc tgtcgcccac
      721 gctgaagtgc agtggcgcgg atctcggctc attgtaacct ccgcctcccg ggttcaagtg
      781 attctcctcc ctcagcctcc ggagtagctg ggactacagg catgcatcac cacgcctggc
      841 taattttttt gtgtttttag tagagacggg gtttcgccat gttgggctgg ctggtctcga
      901 gctcctgacc tcaaatgatt ggcccgcctc ggccttccaa agtgctggga ttacaggcgt
      961 gagcctccgc gcccggcctc tctccccttt gttatgggcc ctaaatgact ctatttcctc
     1021 ctgcatatca cctgcccgac tcctgtaggc atttgaattg atgattcatg atacggtctt
     1081 tagaggctcc agaggaattt gcaaattatt atcatccact aagtgattgc tgattacctg
     1141 agatacagca gctcaaaaag gacaaggtct ctgcctatgg gagtgttgtt acagatctta
     1201 taacagtcgg tttaaagcgg ggatctgatg agcttctttc ttctggcatc attaacggac
     1261 cttttaccat gaatagttct actccttcta caggtgtgta tggctttctt agaaatggct
     1321 tctgaggaag ctgccgttac tatggtgaat tattacactc ctattactcc tcaccttcga
     1381 agccagcctg tttatattca gtattccaat cacagagaac ttaagactga caatctacct
     1441 aatcaagctc gagcccaagc tgcactgcag gctgtcagtg ccgtccaatc aggaagcctg
     1501 gccctttctg gaggtccttc caatgaaggc acagtcctac ctgggcagag ccctgtgctt
     1561 cgaataatta ttgaaaacct cttttaccct gttaccctgg aagttcttca tcagatattt
     1621 tctaaatttg gcacagtctt gaagattatc acctttacaa agaataatca gtttcaagcc
     1681 ttgcttcagt atgctgaccc agtaaatgca cattatgcca aaatggctct ggatggccag
     1741 aatatctata atgcatgctg cactctgcgc attgacttct ccaagctcac cagccttaat
     1801 gtgaaatata ataatgacaa aagcagagac ttcactcgct tagaccttcc tactggtgat
     1861 ggccagccat cccttgaacc ccctatggct gctgcttttg gtgcaccggg tataatttct
     1921 tcaccatatg caggggctgc tggatttgcc ccagccattg gatttcctca agctacaggt
     1981 ctatcagttc cagctgttcc tggagctctt ggtcctctca caatcacctc ttctgctgtc
     2041 actggaagga tggccattcc tggggctagt ggtataccag gaaattctgt tctactcgtc
     2101 acaaatctca atcctgatct tatcacacca catgggcttt ttatcctatt tggagtctat
     2161 ggtgatgtac atcgagtgaa gattatgttt aataagaaag aaaatgcctt ggttcagatg
     2221 gcggatgcaa atcaagctca gctagcaatg aaccatctaa gtggtcagag actttatggg
     2281 aaagtgcttc gtgctacact gtccaaacat caagcagtac agcttcctcg agagggacaa
     2341 gaagaccaag gtctgactaa ggatttcagc aatagtcctt tgcatcgctt taaaaagccg
     2401 ggctctaaaa acttccagaa tatctttcca ccatcagcca ctctgcatct ttccaacatt
     2461 cccccttctg ttacagtgga tgatctgaag aaccttttca tagaagctgg atgttcagtg
     2521 aaggctttta aattctttca gaaagatcgc aaaatggcgc tcattcaatt gggatctgtg
     2581 gaagaagcaa ttcaggccct cattgagctt cataaccatg accttggaga aaatcaccac
     2641 ctcagagttt ccttctcaaa atctacaatc tgacttttct gtgaattttt ctcctaaaac
     2701 tggaccataa tttcagtaaa accttcagac atagactgaa gcagctcaag accaattttg
     2761 cctctttcac aaaaataact ctgagtttga tattcaagta tattttaaaa atcaagggat
     2821 tttttttttt tgtattcccc ctgcccccgc cagtcaaagg tttcttttcc ctttttacca
     2881 tggtttctac aaaaataacc ttcaggaaaa agaaaatcag gaaaaaaatt ttttttcaat
     2941 aatcttattc cctatattaa attagatttg aagaggatta acgttgtttt agtttgggtc
     3001 cagatcagcc ttatacaaca tttctaaact catttgtact tttaaaaaat ttaaacacag
     3061 acttctaaaa ttacttgatg taagtaattt aaatcactta tgaccaagtt attaacctta
     3121 tgaatcagaa gtctgaccct tgtaggaaat tatattcaca tataaagtac atcagatctt
     3181 tgccatatat tgatggttat tatgcataaa cacattgagt tgtgttggaa gcagatttat
     3241 aaacctgcat gttttctttg aatgatttct ttttttcact gtaagacact cctttaaata
     3301 atgcctatct ttaacttttt aagactattt ggaaaaatgc agtgtctcag ctgtccccag
     3361 ggaaattaag tggaattcaa ctaagatctg ttaataagat gtcagaataa ctaataattt
     3421 tattaggaaa aaatcatgtt ttaaatttca aaatgacact tatttgtcaa gtaatatgat
     3481 cttggaaaat tttaaagaaa aataatccta cttataaact acttttttat aattgttttc
     3541 agaaaaaaag tttacagtct taaggaaaat attcaggtct atcatatggt ttgacagatt
     3601 ttttaaaagt tatttttggt aaggtcttct tttagaaaaa aattaatctc aagggttttt
     3661 tgtaccacta taatctctaa tacttactca gaattactgt gtatttactt aatttcttat
     3721 tatgtgcctt attatgtgct taagatacaa taggttagag tttaatctaa atatcttgaa
     3781 agctatattg tgggcttggt aagcattttg ttttttcttt ctctgttttg gtaaggattt
     3841 aaaatttttt tcattgcaat tttaagtggt tttcaataag taatagtttt tatcaaattt
     3901 ttggtgcttg gtgcagagac ggtgtgggga agggtgaatg gttttgggaa taattcagtg
     3961 cacacctgta ggcctcttta cattgtgact gataggggtt attgcatatc aatttggggc
     4021 tgtagagtgc aatctcagtt tcatcttttt cacccatcag aatttgtctc aggattactt
     4081 ggtttttctc agtcctcaag cgagaacttg cttttctttg ttaatgtgac tttcattact
     4141 gagtacccac gtatttggag tatgagaagg tgggttattt ctcatactct gtccctctct
     4201 ttttcattga atgtaagagt acattttaat gttgcttcag tgattgtata atgtaaaatt
     4261 gtttcttttt aataagaaac tttgctatta tttcttcaat tgttgatcag aattttttaa
     4321 agcagaattt gtcaaaaggg tcattttttt gtctacccct tttacacttt tcagattctc
     4381 aaagtgtctc atctcaactt ttaaaagaat aaagaatatc ttgctgggca tggtggtgtg
     4441 cgcctgtgcg cctgtagtcc cagctacagg ctgagcctgt aggcaggagg ctacaggcag
     4501 gaggatcact tgagcccagg agttcaaggc tgcagtgcgc tatgatcaca tttgtgaata
     4561 gccacttcac tccagccctg gaacatagtg tgaccccttc tcttaaaagt aaaaattaag
     4621 aaaatctcaa tctctttgct gtattccagt gattaatttg aacataggga ggtttttaca
     4681 gaagaaattt taccaaaaaa tagagactgc aagagatgat acagattgtt taaaaagcag
     4741 aattcactca ccactgagca acacttagtt ggtagaatag aaaggaggga tactaagtta
     4801 agacttttca aatggatcag tttggctgaa tagatagata tactcatgta tgtagttgtg
     4861 ggagttttta gttttttgtt tttttactta tgaaataagt tttgacctag acacaagggg
     4921 tatatgaagg aggaaaaaaa tttctttgca aaatctccca aaacttgctt ttttttccct
     4981 tccacacagg cactattata attttcagtg ccatgttaaa ttggattatt tcatttactt
     5041 taagttagga attactgtgt aatttattaa ttcatgattc tcataacatt cagcataagt
     5101 gtagcaaagt tgctaataac ggaaggggat catagtggtg ttgaatgtaa ctttgaagta
     5161 gggaatggcc ttttaagtct gagagagaac atttgaatcc ttttcaggga tttgtgtagg
     5221 ggtgtgtttg tgtgtgtgtg tgaatgtgtg tgtgtgtaga taagtgtata tacataaata
     5281 cactcttcta aagttgtata tacatatgca cattacatac attttaattt attgacaaaa
     5341 ttaaccaaat taagatttgg agatgtggga tgttcttgtt ttaaaatagc atgtttgaaa
     5401 ccatcagttt gtgtctaaaa ttagctgtag cacatggatg ttgtccatat taagctattt
     5461 gctgtttgaa ttatagaggt ctacagtatt tgtgttggca tagtttttgt aaaaaaaaga
     5521 ttaaaaaata tcaggatggt ggaaaaacta gatctgtgta tctctgtttt ggcatgcatt
     5581 tattcagtat cttctagcaa tggtttttct ctgttgatct accgtagtat cctattttta
     5641 agtttatttt atttttaagg agtattgtca tcacttttca aggtgtcttg acttctacac
     5701 aaagtatata tattcaggac tttaaaaaat agcagtacac atttaacagt agcgaattac
     5761 accaaaatga tttactttga gatttgaata atttgcatag cagtaaaatg tgttttgtgt
     5821 aacatacaaa tagaaaaatg acccagtatc ttaattgata cttactggag agtatcagaa
     5881 ttacccagca gctcttacag aatgccataa attctttaag actaaatatt gaaatcaatt
     5941 atttgaagta atgtttctga tttactgtta aaagttgctg agctcagttt ttggagatat
     6001 catttatgcc tgcctgttcc cttatgacag tgaggccttc tttggctcca cctagtatga
     6061 taatcatggg ttctgtttta gttgatgaga agtggctcct atgaatgcct ctgctcaatt
     6121 tctttttatt ttactttatt ttatttttag gggtctcgcc aactcctggg ctcaagtgat
     6181 tctcctgctt ccacctcccc acagtgctgg gattacaggc atgagccacc acgcctggct
     6241 ctctgttctt ttcagtgtct ccgtgccatc agtcagcagt gcttacatgt ttagcatatt
     6301 gtcatgcagt ttctcttctg ttcccacgag atatttttgg acaaaaaatt gacaaaagta
     6361 catgtgtttt tccccaccta tcccttagaa aacctaatgt gtactgctat ttttaaaacc
     6421 aaaaagagac agcgtgacga tgcgtaaagc atttttctta gcctttcctt tgtcttgatc
     6481 tgttaatgag aacaaaactg ccagactcaa aatactctac tattgtgctg aaagaaatac
     6541 aatttagatt gcacaaaatt tgaaaatata actcagctgt cttttaaaag agttgtgttg
     6601 ttatctacaa gactattagc agtctttttt cagagcaaat tttaacagct agttgtgagt
     6661 ggtttaaaat atagaaaatt attaaaatct tagtttgagg ggttttatag tgggagaaaa
     6721 aacaggacca aagtttatgt gccttcttca gtagtcttaa ttgacctttt cttcctattt
     6781 gagactaaag tagtatcagt attctggttt tcaggaaata tgtactatat agttttaaaa
     6841 gaatgttgtc ccaccaacta ttcatccaag caaagaattg taactataaa taaagtctca
     6901 gttacacttt tgcctttatc acataatatt cattgtagag cattgtgcag gtccaagaat
     6961 agagctgctc aaaatctttg tggtagtttc cttagttttt gtaacctgag gcatatgttc
     7021 cagagaacag ggatatttgt ctggtccagt gaccttggtg atcatagtca taattgaaag
     7081 atgcctatgg catgcttaaa tcagcattgt caactgattt gttgttgtat tattttcact
     7141 tcttggatct atgtagtagt tgtaataaca aatatttaaa tagctatttt tttgatgcca
     7201 ttaaaaaaat catactctgg ccttttttcc cccttactgt tgtttcccag atcttttaaa
     7261 aattcatccc atatccagaa agtaccagtt ataaagattg ctgaccaagc aaagttttgc
     7321 atcaaagtgt cacctcattg ctctgaccaa agactgactg ttgtggtttt aactcctctc
     7381 tgtaaagcat tttgcatttt ccccaagctc ctttctgaaa gaagaaccag tgcagagcgg
     7441 cctttacttt caatttctac tgctgaatag actacttaga gaaaatgtga gtttcagtgt
     7501 gaacagaatg gattaggatg acgagtttga tgggcatttt cagtactgta tctaagaaaa
     7561 aaaaaatagc acagctagga gcctctgaca ttgtctggtg ttttacgtgg tctgttcatc
     7621 aaaattcccc ttttcagttt ttaagaatgt tcgtctaaca gaagaaaatg ctgtaaatat
     7681 ttgtaacaac atttttttta acaaggccaa aaaagaaaaa aaggtttttg ggaacaaatg
     7741 aacttataaa gtggttttat ataaaacatc aattgtcttg tatattttgg ataagcagca
     7801 gtaccagctt tcatttgtaa cagtctgtgg cattggaaaa aaaggagtct gtgattgttg
     7861 aagtgaatta tgttataaat gcaaagagaa gataaaatat taaaaaacat attttctaaa
     7921 tgcgtagtgc atggttaatt caagcttctg tacactacag tatattccat tttcgttcag
     7981 tttgtatatt tgctgactat tacttgatat ctctaatctc ttttcctaac aaatatagca
     8041 ttgtagcatg ccttttaata aatgtcatga catctgtact ctcttaaaat ttttctgtgt
     8101 tcttgtctgt actttgggtt tccctttgtc ttacctgtaa ttctaatgat gtcctatttt
     8161 cttttctttt ccatagccat ccatctaaac gtgtcatggt tagtgaatag tgagcacata
     8221 ttcaaacaat gttcaaaatg ggaaaaacac aaaatctatt aactgtctct gtcttcattt
     8281 aggaataatt ctcgttttga ggagcaaagt gctttcctaa tcttcctatg atgcaccttc
     8341 tctggcactg ccccgtaatg caggggcatg gcggcatgct ttcttgcttg cacactcact
     8401 ctcctttttc tttctctctt tctccccata tgtgcagtgc caaactacag ttggaacact
     8461 atttccagtt ttgttcagta tttggcttcc ctacggcatt agtatacata cactttgaga
     8521 cacaaggtgt gatctcaaac caaatttgtg tcctctttaa aaaggtagca cagatactag
     8581 ctgatgctac attccttttc cttagacaaa cgttttactt ctcagatctt taaagaattg
     8641 ttggattgca gaagtctaga cttagcgttc attgtatatt ttagtctcct ggaagtggga
     8701 atttattttg aatggaatag aaaattaggt aatcactact aatctttgct ggcttacctg
     8761 taaaatctgt ggtctccata aatactggga aaataaatag gtattttta
//
