LOCUS       XM_047424270            7922 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens polypyrimidine tract binding protein 3
            (PTBP3), transcript variant X6, mRNA.
ACCESSION   XM_047424270
VERSION     XM_047424270.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000009.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7922
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
     gene            1..7922
                     /gene="PTBP3"
                     /gene_synonym="ROD1"
                     /note="polypyrimidine tract binding protein 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 26 ESTs, 2794 long SRA reads, 11 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:9991"
                     /db_xref="HGNC:HGNC:10253"
                     /db_xref="MIM:607527"
     CDS             122..1786
                     /gene="PTBP3"
                     /gene_synonym="ROD1"
                     /codon_start=1
                     /product="polypyrimidine tract-binding protein 3 isoform
                     X6"
                     /protein_id="XP_047280226.1"
                     /db_xref="GeneID:9991"
                     /db_xref="HGNC:HGNC:10253"
                     /db_xref="MIM:607527"
                     /translation="MIVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTGVYANG
                     NDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLE
                     MASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQ
                     SGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTK
                     NNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFT
                     RLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGAL
                     GPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKI
                     MFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLT
                     KDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFK
                     FFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI"
ORIGIN      
        1 gtgagatacg ttaacgcttt ctcgacacca ggggtctgga cttagtgacc atggacgctt
       61 ccccctcacc tttctctctc cccaagaaac ttaatgaatt atctgcccgt gtatgtaaaa
      121 tatgattgtt gttacagatc ttataacagt cggtttaaag cggggatctg atgagcttct
      181 ttcttctggc atcattaacg gaccttttac catgaatagt tctactcctt ctacaggtgt
      241 gtatgctaat gggaatgaca gcaagaaatt taaacgagat agacctccct gttcgccttc
      301 ccgtgttctc catcttcgaa aaattccatg tgatgtcacc gaagcagaga tcatatcatt
      361 aggtctacca tttggcaaag taactaatct tttgatgttg aaaggaaaaa gccaggcttt
      421 cttagaaatg gcttctgagg aagctgccgt tactatggtg aattattaca ctcctattac
      481 tcctcacctt cgaagccagc ctgtttatat tcagtattcc aatcacagag aacttaagac
      541 tgacaatcta cctaatcaag ctcgagccca agctgcactg caggctgtca gtgccgtcca
      601 atcaggaagc ctggcccttt ctggaggtcc ttccaatgaa ggcacagtcc tacctgggca
      661 gagccctgtg cttcgaataa ttattgaaaa cctcttttac cctgttaccc tggaagttct
      721 tcatcagata ttttctaaat ttggcacagt cttgaagatt atcaccttta caaagaataa
      781 tcagtttcaa gccttgcttc agtatgctga cccagtaaat gcacattatg ccaaaatggc
      841 tctggatggc cagaatatct ataatgcatg ctgcactctg cgcattgact tctccaagct
      901 caccagcctt aatgtgaaat ataataatga caaaagcaga gacttcactc gcttagacct
      961 tcctactggt gatggccagc catcccttga accccctatg gctgctgctt ttggtgcacc
     1021 gggtataatt tcttcaccat atgcaggggc tgctggattt gccccagcca ttggatttcc
     1081 tcaagctaca ggtctatcag ttccagctgt tcctggagct cttggtcctc tcacaatcac
     1141 ctcttctgct gtcactggaa ggatggccat tcctggggct agtggtatac caggaaattc
     1201 tgttctactc gtcacaaatc tcaatcctga tcttatcaca ccacatgggc tttttatcct
     1261 atttggagtc tatggtgatg tacatcgagt gaagattatg tttaataaga aagaaaatgc
     1321 cttggttcag atggcggatg caaatcaagc tcagctagca atgaaccatc taagtggtca
     1381 gagactttat gggaaagtgc ttcgtgctac actgtccaaa catcaagcag tacagcttcc
     1441 tcgagaggga caagaagacc aaggtctgac taaggatttc agcaatagtc ctttgcatcg
     1501 ctttaaaaag ccgggctcta aaaacttcca gaatatcttt ccaccatcag ccactctgca
     1561 tctttccaac attccccctt ctgttacagt ggatgatctg aagaaccttt tcatagaagc
     1621 tggatgttca gtgaaggctt ttaaattctt tcagaaagat cgcaaaatgg cgctcattca
     1681 attgggatct gtggaagaag caattcaggc cctcattgag cttcataacc atgaccttgg
     1741 agaaaatcac cacctcagag tttccttctc aaaatctaca atctgacttt tctgtgaatt
     1801 tttctcctaa aactggacca taatttcagt aaaaccttca gacatagact gaagcagctc
     1861 aagaccaatt ttgcctcttt cacaaaaata actctgagtt tgatattcaa gtatatttta
     1921 aaaatcaagg gatttttttt ttttgtattc cccctgcccc cgccagtcaa aggtttcttt
     1981 tcccttttta ccatggtttc tacaaaaata accttcagga aaaagaaaat caggaaaaaa
     2041 attttttttc aataatctta ttccctatat taaattagat ttgaagagga ttaacgttgt
     2101 tttagtttgg gtccagatca gccttataca acatttctaa actcatttgt acttttaaaa
     2161 aatttaaaca cagacttcta aaattacttg atgtaagtaa tttaaatcac ttatgaccaa
     2221 gttattaacc ttatgaatca gaagtctgac ccttgtagga aattatattc acatataaag
     2281 tacatcagat ctttgccata tattgatggt tattatgcat aaacacattg agttgtgttg
     2341 gaagcagatt tataaacctg catgttttct ttgaatgatt tctttttttc actgtaagac
     2401 actcctttaa ataatgccta tctttaactt tttaagacta tttggaaaaa tgcagtgtct
     2461 cagctgtccc cagggaaatt aagtggaatt caactaagat ctgttaataa gatgtcagaa
     2521 taactaataa ttttattagg aaaaaatcat gttttaaatt tcaaaatgac acttatttgt
     2581 caagtaatat gatcttggaa aattttaaag aaaaataatc ctacttataa actacttttt
     2641 tataattgtt ttcagaaaaa aagtttacag tcttaaggaa aatattcagg tctatcatat
     2701 ggtttgacag attttttaaa agttattttt ggtaaggtct tcttttagaa aaaaattaat
     2761 ctcaagggtt ttttgtacca ctataatctc taatacttac tcagaattac tgtgtattta
     2821 cttaatttct tattatgtgc cttattatgt gcttaagata caataggtta gagtttaatc
     2881 taaatatctt gaaagctata ttgtgggctt ggtaagcatt ttgttttttc tttctctgtt
     2941 ttggtaagga tttaaaattt ttttcattgc aattttaagt ggttttcaat aagtaatagt
     3001 ttttatcaaa tttttggtgc ttggtgcaga gacggtgtgg ggaagggtga atggttttgg
     3061 gaataattca gtgcacacct gtaggcctct ttacattgtg actgataggg gttattgcat
     3121 atcaatttgg ggctgtagag tgcaatctca gtttcatctt tttcacccat cagaatttgt
     3181 ctcaggatta cttggttttt ctcagtcctc aagcgagaac ttgcttttct ttgttaatgt
     3241 gactttcatt actgagtacc cacgtatttg gagtatgaga aggtgggtta tttctcatac
     3301 tctgtccctc tctttttcat tgaatgtaag agtacatttt aatgttgctt cagtgattgt
     3361 ataatgtaaa attgtttctt tttaataaga aactttgcta ttatttcttc aattgttgat
     3421 cagaattttt taaagcagaa tttgtcaaaa gggtcatttt tttgtctacc ccttttacac
     3481 ttttcagatt ctcaaagtgt ctcatctcaa cttttaaaag aataaagaat atcttgctgg
     3541 gcatggtggt gtgcgcctgt gcgcctgtag tcccagctac aggctgagcc tgtaggcagg
     3601 aggctacagg caggaggatc acttgagccc aggagttcaa ggctgcagtg cgctatgatc
     3661 acatttgtga atagccactt cactccagcc ctggaacata gtgtgacccc ttctcttaaa
     3721 agtaaaaatt aagaaaatct caatctcttt gctgtattcc agtgattaat ttgaacatag
     3781 ggaggttttt acagaagaaa ttttaccaaa aaatagagac tgcaagagat gatacagatt
     3841 gtttaaaaag cagaattcac tcaccactga gcaacactta gttggtagaa tagaaaggag
     3901 ggatactaag ttaagacttt tcaaatggat cagtttggct gaatagatag atatactcat
     3961 gtatgtagtt gtgggagttt ttagtttttt gtttttttac ttatgaaata agttttgacc
     4021 tagacacaag gggtatatga aggaggaaaa aaatttcttt gcaaaatctc ccaaaacttg
     4081 cttttttttc ccttccacac aggcactatt ataattttca gtgccatgtt aaattggatt
     4141 atttcattta ctttaagtta ggaattactg tgtaatttat taattcatga ttctcataac
     4201 attcagcata agtgtagcaa agttgctaat aacggaaggg gatcatagtg gtgttgaatg
     4261 taactttgaa gtagggaatg gccttttaag tctgagagag aacatttgaa tccttttcag
     4321 ggatttgtgt aggggtgtgt ttgtgtgtgt gtgtgaatgt gtgtgtgtgt agataagtgt
     4381 atatacataa atacactctt ctaaagttgt atatacatat gcacattaca tacattttaa
     4441 tttattgaca aaattaacca aattaagatt tggagatgtg ggatgttctt gttttaaaat
     4501 agcatgtttg aaaccatcag tttgtgtcta aaattagctg tagcacatgg atgttgtcca
     4561 tattaagcta tttgctgttt gaattataga ggtctacagt atttgtgttg gcatagtttt
     4621 tgtaaaaaaa agattaaaaa atatcaggat ggtggaaaaa ctagatctgt gtatctctgt
     4681 tttggcatgc atttattcag tatcttctag caatggtttt tctctgttga tctaccgtag
     4741 tatcctattt ttaagtttat tttattttta aggagtattg tcatcacttt tcaaggtgtc
     4801 ttgacttcta cacaaagtat atatattcag gactttaaaa aatagcagta cacatttaac
     4861 agtagcgaat tacaccaaaa tgatttactt tgagatttga ataatttgca tagcagtaaa
     4921 atgtgttttg tgtaacatac aaatagaaaa atgacccagt atcttaattg atacttactg
     4981 gagagtatca gaattaccca gcagctctta cagaatgcca taaattcttt aagactaaat
     5041 attgaaatca attatttgaa gtaatgtttc tgatttactg ttaaaagttg ctgagctcag
     5101 tttttggaga tatcatttat gcctgcctgt tcccttatga cagtgaggcc ttctttggct
     5161 ccacctagta tgataatcat gggttctgtt ttagttgatg agaagtggct cctatgaatg
     5221 cctctgctca atttcttttt attttacttt attttatttt taggggtctc gccaactcct
     5281 gggctcaagt gattctcctg cttccacctc cccacagtgc tgggattaca ggcatgagcc
     5341 accacgcctg gctctctgtt cttttcagtg tctccgtgcc atcagtcagc agtgcttaca
     5401 tgtttagcat attgtcatgc agtttctctt ctgttcccac gagatatttt tggacaaaaa
     5461 attgacaaaa gtacatgtgt ttttccccac ctatccctta gaaaacctaa tgtgtactgc
     5521 tatttttaaa accaaaaaga gacagcgtga cgatgcgtaa agcatttttc ttagcctttc
     5581 ctttgtcttg atctgttaat gagaacaaaa ctgccagact caaaatactc tactattgtg
     5641 ctgaaagaaa tacaatttag attgcacaaa atttgaaaat ataactcagc tgtcttttaa
     5701 aagagttgtg ttgttatcta caagactatt agcagtcttt tttcagagca aattttaaca
     5761 gctagttgtg agtggtttaa aatatagaaa attattaaaa tcttagtttg aggggtttta
     5821 tagtgggaga aaaaacagga ccaaagttta tgtgccttct tcagtagtct taattgacct
     5881 tttcttccta tttgagacta aagtagtatc agtattctgg ttttcaggaa atatgtacta
     5941 tatagtttta aaagaatgtt gtcccaccaa ctattcatcc aagcaaagaa ttgtaactat
     6001 aaataaagtc tcagttacac ttttgccttt atcacataat attcattgta gagcattgtg
     6061 caggtccaag aatagagctg ctcaaaatct ttgtggtagt ttccttagtt tttgtaacct
     6121 gaggcatatg ttccagagaa cagggatatt tgtctggtcc agtgaccttg gtgatcatag
     6181 tcataattga aagatgccta tggcatgctt aaatcagcat tgtcaactga tttgttgttg
     6241 tattattttc acttcttgga tctatgtagt agttgtaata acaaatattt aaatagctat
     6301 ttttttgatg ccattaaaaa aatcatactc tggccttttt tcccccttac tgttgtttcc
     6361 cagatctttt aaaaattcat cccatatcca gaaagtacca gttataaaga ttgctgacca
     6421 agcaaagttt tgcatcaaag tgtcacctca ttgctctgac caaagactga ctgttgtggt
     6481 tttaactcct ctctgtaaag cattttgcat tttccccaag ctcctttctg aaagaagaac
     6541 cagtgcagag cggcctttac tttcaatttc tactgctgaa tagactactt agagaaaatg
     6601 tgagtttcag tgtgaacaga atggattagg atgacgagtt tgatgggcat tttcagtact
     6661 gtatctaaga aaaaaaaaat agcacagcta ggagcctctg acattgtctg gtgttttacg
     6721 tggtctgttc atcaaaattc cccttttcag tttttaagaa tgttcgtcta acagaagaaa
     6781 atgctgtaaa tatttgtaac aacatttttt ttaacaaggc caaaaaagaa aaaaaggttt
     6841 ttgggaacaa atgaacttat aaagtggttt tatataaaac atcaattgtc ttgtatattt
     6901 tggataagca gcagtaccag ctttcatttg taacagtctg tggcattgga aaaaaaggag
     6961 tctgtgattg ttgaagtgaa ttatgttata aatgcaaaga gaagataaaa tattaaaaaa
     7021 catattttct aaatgcgtag tgcatggtta attcaagctt ctgtacacta cagtatattc
     7081 cattttcgtt cagtttgtat atttgctgac tattacttga tatctctaat ctcttttcct
     7141 aacaaatata gcattgtagc atgcctttta ataaatgtca tgacatctgt actctcttaa
     7201 aatttttctg tgttcttgtc tgtactttgg gtttcccttt gtcttacctg taattctaat
     7261 gatgtcctat tttcttttct tttccatagc catccatcta aacgtgtcat ggttagtgaa
     7321 tagtgagcac atattcaaac aatgttcaaa atgggaaaaa cacaaaatct attaactgtc
     7381 tctgtcttca tttaggaata attctcgttt tgaggagcaa agtgctttcc taatcttcct
     7441 atgatgcacc ttctctggca ctgccccgta atgcaggggc atggcggcat gctttcttgc
     7501 ttgcacactc actctccttt ttctttctct ctttctcccc atatgtgcag tgccaaacta
     7561 cagttggaac actatttcca gttttgttca gtatttggct tccctacggc attagtatac
     7621 atacactttg agacacaagg tgtgatctca aaccaaattt gtgtcctctt taaaaaggta
     7681 gcacagatac tagctgatgc tacattcctt ttccttagac aaacgtttta cttctcagat
     7741 ctttaaagaa ttgttggatt gcagaagtct agacttagcg ttcattgtat attttagtct
     7801 cctggaagtg ggaatttatt ttgaatggaa tagaaaatta ggtaatcact actaatcttt
     7861 gctggcttac ctgtaaaatc tgtggtctcc ataaatactg ggaaaataaa taggtatttt
     7921 ta
//
