LOCUS       XM_047424268            8030 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens polypyrimidine tract binding protein 3
            (PTBP3), transcript variant X5, mRNA.
ACCESSION   XM_047424268
VERSION     XM_047424268.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000009.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8030
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
     gene            1..8030
                     /gene="PTBP3"
                     /gene_synonym="ROD1"
                     /note="polypyrimidine tract binding protein 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 26 ESTs, 2787 long SRA reads, 12 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 15 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:9991"
                     /db_xref="HGNC:HGNC:10253"
                     /db_xref="MIM:607527"
     CDS             227..1894
                     /gene="PTBP3"
                     /gene_synonym="ROD1"
                     /codon_start=1
                     /product="polypyrimidine tract-binding protein 3 isoform
                     X5"
                     /protein_id="XP_047280224.1"
                     /db_xref="GeneID:9991"
                     /db_xref="HGNC:HGNC:10253"
                     /db_xref="MIM:607527"
                     /translation="MNYLPVVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTAN
                     GNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFL
                     EMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAV
                     QSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT
                     KNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDF
                     TRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGA
                     LGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVK
                     IMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGL
                     TKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAF
                     KFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI"
ORIGIN      
        1 gaggtggggc gagcggccga cggcgggtgc acgcgtcggt acacgtctgg gcggcgacct
       61 ggtcgcaagc catggtccca cgcggggtcc cagggccgcc gcgggacttg gccgaggtct
      121 cccgacttgt gctgtgagat acgttaacgc tttctcgaca ccaggggtct ggacttagtg
      181 accatggacg cttccccctc acctttctct ctccccaaga aacttaatga attatctgcc
      241 cgttgttgtt acagatctta taacagtcgg tttaaagcgg ggatctgatg agcttctttc
      301 ttctggcatc attaacggac cttttaccat gaatagttct actccttcta cagctaatgg
      361 gaatgacagc aagaaattta aacgagatag acctccctgt tcgccttccc gtgttctcca
      421 tcttcgaaaa attccatgtg atgtcaccga agcagagatc atatcattag gtctaccatt
      481 tggcaaagta actaatcttt tgatgttgaa aggaaaaagc caggctttct tagaaatggc
      541 ttctgaggaa gctgccgtta ctatggtgaa ttattacact cctattactc ctcaccttcg
      601 aagccagcct gtttatattc agtattccaa tcacagagaa cttaagactg acaatctacc
      661 taatcaagct cgagcccaag ctgcactgca ggctgtcagt gccgtccaat caggaagcct
      721 ggccctttct ggaggtcctt ccaatgaagg cacagtccta cctgggcaga gccctgtgct
      781 tcgaataatt attgaaaacc tcttttaccc tgttaccctg gaagttcttc atcagatatt
      841 ttctaaattt ggcacagtct tgaagattat cacctttaca aagaataatc agtttcaagc
      901 cttgcttcag tatgctgacc cagtaaatgc acattatgcc aaaatggctc tggatggcca
      961 gaatatctat aatgcatgct gcactctgcg cattgacttc tccaagctca ccagccttaa
     1021 tgtgaaatat aataatgaca aaagcagaga cttcactcgc ttagaccttc ctactggtga
     1081 tggccagcca tcccttgaac cccctatggc tgctgctttt ggtgcaccgg gtataatttc
     1141 ttcaccatat gcaggggctg ctggatttgc cccagccatt ggatttcctc aagctacagg
     1201 tctatcagtt ccagctgttc ctggagctct tggtcctctc acaatcacct cttctgctgt
     1261 cactggaagg atggccattc ctggggctag tggtatacca ggaaattctg ttctactcgt
     1321 cacaaatctc aatcctgatc ttatcacacc acatgggctt tttatcctat ttggagtcta
     1381 tggtgatgta catcgagtga agattatgtt taataagaaa gaaaatgcct tggttcagat
     1441 ggcggatgca aatcaagctc agctagcaat gaaccatcta agtggtcaga gactttatgg
     1501 gaaagtgctt cgtgctacac tgtccaaaca tcaagcagta cagcttcctc gagagggaca
     1561 agaagaccaa ggtctgacta aggatttcag caatagtcct ttgcatcgct ttaaaaagcc
     1621 gggctctaaa aacttccaga atatctttcc accatcagcc actctgcatc tttccaacat
     1681 tcccccttct gttacagtgg atgatctgaa gaaccttttc atagaagctg gatgttcagt
     1741 gaaggctttt aaattctttc agaaagatcg caaaatggcg ctcattcaat tgggatctgt
     1801 ggaagaagca attcaggccc tcattgagct tcataaccat gaccttggag aaaatcacca
     1861 cctcagagtt tccttctcaa aatctacaat ctgacttttc tgtgaatttt tctcctaaaa
     1921 ctggaccata atttcagtaa aaccttcaga catagactga agcagctcaa gaccaatttt
     1981 gcctctttca caaaaataac tctgagtttg atattcaagt atattttaaa aatcaaggga
     2041 tttttttttt ttgtattccc cctgcccccg ccagtcaaag gtttcttttc cctttttacc
     2101 atggtttcta caaaaataac cttcaggaaa aagaaaatca ggaaaaaaat tttttttcaa
     2161 taatcttatt ccctatatta aattagattt gaagaggatt aacgttgttt tagtttgggt
     2221 ccagatcagc cttatacaac atttctaaac tcatttgtac ttttaaaaaa tttaaacaca
     2281 gacttctaaa attacttgat gtaagtaatt taaatcactt atgaccaagt tattaacctt
     2341 atgaatcaga agtctgaccc ttgtaggaaa ttatattcac atataaagta catcagatct
     2401 ttgccatata ttgatggtta ttatgcataa acacattgag ttgtgttgga agcagattta
     2461 taaacctgca tgttttcttt gaatgatttc tttttttcac tgtaagacac tcctttaaat
     2521 aatgcctatc tttaactttt taagactatt tggaaaaatg cagtgtctca gctgtcccca
     2581 gggaaattaa gtggaattca actaagatct gttaataaga tgtcagaata actaataatt
     2641 ttattaggaa aaaatcatgt tttaaatttc aaaatgacac ttatttgtca agtaatatga
     2701 tcttggaaaa ttttaaagaa aaataatcct acttataaac tactttttta taattgtttt
     2761 cagaaaaaaa gtttacagtc ttaaggaaaa tattcaggtc tatcatatgg tttgacagat
     2821 tttttaaaag ttatttttgg taaggtcttc ttttagaaaa aaattaatct caagggtttt
     2881 ttgtaccact ataatctcta atacttactc agaattactg tgtatttact taatttctta
     2941 ttatgtgcct tattatgtgc ttaagataca ataggttaga gtttaatcta aatatcttga
     3001 aagctatatt gtgggcttgg taagcatttt gttttttctt tctctgtttt ggtaaggatt
     3061 taaaattttt ttcattgcaa ttttaagtgg ttttcaataa gtaatagttt ttatcaaatt
     3121 tttggtgctt ggtgcagaga cggtgtgggg aagggtgaat ggttttggga ataattcagt
     3181 gcacacctgt aggcctcttt acattgtgac tgataggggt tattgcatat caatttgggg
     3241 ctgtagagtg caatctcagt ttcatctttt tcacccatca gaatttgtct caggattact
     3301 tggtttttct cagtcctcaa gcgagaactt gcttttcttt gttaatgtga ctttcattac
     3361 tgagtaccca cgtatttgga gtatgagaag gtgggttatt tctcatactc tgtccctctc
     3421 tttttcattg aatgtaagag tacattttaa tgttgcttca gtgattgtat aatgtaaaat
     3481 tgtttctttt taataagaaa ctttgctatt atttcttcaa ttgttgatca gaatttttta
     3541 aagcagaatt tgtcaaaagg gtcatttttt tgtctacccc ttttacactt ttcagattct
     3601 caaagtgtct catctcaact tttaaaagaa taaagaatat cttgctgggc atggtggtgt
     3661 gcgcctgtgc gcctgtagtc ccagctacag gctgagcctg taggcaggag gctacaggca
     3721 ggaggatcac ttgagcccag gagttcaagg ctgcagtgcg ctatgatcac atttgtgaat
     3781 agccacttca ctccagccct ggaacatagt gtgacccctt ctcttaaaag taaaaattaa
     3841 gaaaatctca atctctttgc tgtattccag tgattaattt gaacataggg aggtttttac
     3901 agaagaaatt ttaccaaaaa atagagactg caagagatga tacagattgt ttaaaaagca
     3961 gaattcactc accactgagc aacacttagt tggtagaata gaaaggaggg atactaagtt
     4021 aagacttttc aaatggatca gtttggctga atagatagat atactcatgt atgtagttgt
     4081 gggagttttt agttttttgt ttttttactt atgaaataag ttttgaccta gacacaaggg
     4141 gtatatgaag gaggaaaaaa atttctttgc aaaatctccc aaaacttgct tttttttccc
     4201 ttccacacag gcactattat aattttcagt gccatgttaa attggattat ttcatttact
     4261 ttaagttagg aattactgtg taatttatta attcatgatt ctcataacat tcagcataag
     4321 tgtagcaaag ttgctaataa cggaagggga tcatagtggt gttgaatgta actttgaagt
     4381 agggaatggc cttttaagtc tgagagagaa catttgaatc cttttcaggg atttgtgtag
     4441 gggtgtgttt gtgtgtgtgt gtgaatgtgt gtgtgtgtag ataagtgtat atacataaat
     4501 acactcttct aaagttgtat atacatatgc acattacata cattttaatt tattgacaaa
     4561 attaaccaaa ttaagatttg gagatgtggg atgttcttgt tttaaaatag catgtttgaa
     4621 accatcagtt tgtgtctaaa attagctgta gcacatggat gttgtccata ttaagctatt
     4681 tgctgtttga attatagagg tctacagtat ttgtgttggc atagtttttg taaaaaaaag
     4741 attaaaaaat atcaggatgg tggaaaaact agatctgtgt atctctgttt tggcatgcat
     4801 ttattcagta tcttctagca atggtttttc tctgttgatc taccgtagta tcctattttt
     4861 aagtttattt tatttttaag gagtattgtc atcacttttc aaggtgtctt gacttctaca
     4921 caaagtatat atattcagga ctttaaaaaa tagcagtaca catttaacag tagcgaatta
     4981 caccaaaatg atttactttg agatttgaat aatttgcata gcagtaaaat gtgttttgtg
     5041 taacatacaa atagaaaaat gacccagtat cttaattgat acttactgga gagtatcaga
     5101 attacccagc agctcttaca gaatgccata aattctttaa gactaaatat tgaaatcaat
     5161 tatttgaagt aatgtttctg atttactgtt aaaagttgct gagctcagtt tttggagata
     5221 tcatttatgc ctgcctgttc ccttatgaca gtgaggcctt ctttggctcc acctagtatg
     5281 ataatcatgg gttctgtttt agttgatgag aagtggctcc tatgaatgcc tctgctcaat
     5341 ttctttttat tttactttat tttattttta ggggtctcgc caactcctgg gctcaagtga
     5401 ttctcctgct tccacctccc cacagtgctg ggattacagg catgagccac cacgcctggc
     5461 tctctgttct tttcagtgtc tccgtgccat cagtcagcag tgcttacatg tttagcatat
     5521 tgtcatgcag tttctcttct gttcccacga gatatttttg gacaaaaaat tgacaaaagt
     5581 acatgtgttt ttccccacct atcccttaga aaacctaatg tgtactgcta tttttaaaac
     5641 caaaaagaga cagcgtgacg atgcgtaaag catttttctt agcctttcct ttgtcttgat
     5701 ctgttaatga gaacaaaact gccagactca aaatactcta ctattgtgct gaaagaaata
     5761 caatttagat tgcacaaaat ttgaaaatat aactcagctg tcttttaaaa gagttgtgtt
     5821 gttatctaca agactattag cagtcttttt tcagagcaaa ttttaacagc tagttgtgag
     5881 tggtttaaaa tatagaaaat tattaaaatc ttagtttgag gggttttata gtgggagaaa
     5941 aaacaggacc aaagtttatg tgccttcttc agtagtctta attgaccttt tcttcctatt
     6001 tgagactaaa gtagtatcag tattctggtt ttcaggaaat atgtactata tagttttaaa
     6061 agaatgttgt cccaccaact attcatccaa gcaaagaatt gtaactataa ataaagtctc
     6121 agttacactt ttgcctttat cacataatat tcattgtaga gcattgtgca ggtccaagaa
     6181 tagagctgct caaaatcttt gtggtagttt ccttagtttt tgtaacctga ggcatatgtt
     6241 ccagagaaca gggatatttg tctggtccag tgaccttggt gatcatagtc ataattgaaa
     6301 gatgcctatg gcatgcttaa atcagcattg tcaactgatt tgttgttgta ttattttcac
     6361 ttcttggatc tatgtagtag ttgtaataac aaatatttaa atagctattt ttttgatgcc
     6421 attaaaaaaa tcatactctg gccttttttc ccccttactg ttgtttccca gatcttttaa
     6481 aaattcatcc catatccaga aagtaccagt tataaagatt gctgaccaag caaagttttg
     6541 catcaaagtg tcacctcatt gctctgacca aagactgact gttgtggttt taactcctct
     6601 ctgtaaagca ttttgcattt tccccaagct cctttctgaa agaagaacca gtgcagagcg
     6661 gcctttactt tcaatttcta ctgctgaata gactacttag agaaaatgtg agtttcagtg
     6721 tgaacagaat ggattaggat gacgagtttg atgggcattt tcagtactgt atctaagaaa
     6781 aaaaaaatag cacagctagg agcctctgac attgtctggt gttttacgtg gtctgttcat
     6841 caaaattccc cttttcagtt tttaagaatg ttcgtctaac agaagaaaat gctgtaaata
     6901 tttgtaacaa catttttttt aacaaggcca aaaaagaaaa aaaggttttt gggaacaaat
     6961 gaacttataa agtggtttta tataaaacat caattgtctt gtatattttg gataagcagc
     7021 agtaccagct ttcatttgta acagtctgtg gcattggaaa aaaaggagtc tgtgattgtt
     7081 gaagtgaatt atgttataaa tgcaaagaga agataaaata ttaaaaaaca tattttctaa
     7141 atgcgtagtg catggttaat tcaagcttct gtacactaca gtatattcca ttttcgttca
     7201 gtttgtatat ttgctgacta ttacttgata tctctaatct cttttcctaa caaatatagc
     7261 attgtagcat gccttttaat aaatgtcatg acatctgtac tctcttaaaa tttttctgtg
     7321 ttcttgtctg tactttgggt ttccctttgt cttacctgta attctaatga tgtcctattt
     7381 tcttttcttt tccatagcca tccatctaaa cgtgtcatgg ttagtgaata gtgagcacat
     7441 attcaaacaa tgttcaaaat gggaaaaaca caaaatctat taactgtctc tgtcttcatt
     7501 taggaataat tctcgttttg aggagcaaag tgctttccta atcttcctat gatgcacctt
     7561 ctctggcact gccccgtaat gcaggggcat ggcggcatgc tttcttgctt gcacactcac
     7621 tctccttttt ctttctctct ttctccccat atgtgcagtg ccaaactaca gttggaacac
     7681 tatttccagt tttgttcagt atttggcttc cctacggcat tagtatacat acactttgag
     7741 acacaaggtg tgatctcaaa ccaaatttgt gtcctcttta aaaaggtagc acagatacta
     7801 gctgatgcta cattcctttt ccttagacaa acgttttact tctcagatct ttaaagaatt
     7861 gttggattgc agaagtctag acttagcgtt cattgtatat tttagtctcc tggaagtggg
     7921 aatttatttt gaatggaata gaaaattagg taatcactac taatctttgc tggcttacct
     7981 gtaaaatctg tggtctccat aaatactggg aaaataaata ggtattttta
//
