LOCUS       XM_047429996            5345 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens PR/SET domain 2 (PRDM2), transcript variant
            X3, mRNA.
ACCESSION   XM_047429996
VERSION     XM_047429996.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5345
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..5345
                     /gene="PRDM2"
                     /gene_synonym="HUMHOXY1; KMT8; KMT8A; MTB-ZF; RIZ; RIZ1;
                     RIZ2"
                     /note="PR/SET domain 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 822 long SRA
                     reads, 8 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:7799"
                     /db_xref="HGNC:HGNC:9347"
                     /db_xref="MIM:601196"
     CDS             169..5322
                     /gene="PRDM2"
                     /gene_synonym="HUMHOXY1; KMT8; KMT8A; MTB-ZF; RIZ; RIZ1;
                     RIZ2"
                     /codon_start=1
                     /product="PR domain zinc finger protein 2 isoform X3"
                     /protein_id="XP_047285952.1"
                     /db_xref="GeneID:7799"
                     /db_xref="HGNC:HGNC:9347"
                     /db_xref="MIM:601196"
                     /translation="MVNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVW
                     ATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVN
                     WACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARS
                     KRSSPKSRKGKKKSQENKNKGNKIQDIQLKTSEPDFTSANMRDSAEGPKEDEEKPSAS
                     ALEQPATLQEVASQEVPPELATPAPAWEPQPEPDERLEAAACEVNDLGEEEEEEEEED
                     EEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPKTTSEETLEDCS
                     EVTPAMQIPRTKEEANGDVFETFMFPCQHCERKFTTKQGLERHMHIHISTVNHAFKCK
                     YCGKAFGTQINRRRHERRHEAGLKRKPSQTLQPSEDLADGKASGENVASKDDSSPPSL
                     GPDCLIMNSEKASQDTINSSVVEENGEVKELHPCKYCKKVFGTHTNMRRHQRRVHERH
                     LIPKGVRRKGGLEEPQPPAEQAQATQNVYVPSTEPEEEGEADDVYIMDISSNISENLN
                     YYIDGKIQTNNNTSNCDVIEMESASADLYGINCLLTPVTVEITQNIKTTQVPVTEDLP
                     KEPLGSTNSEAKKRRTASPPALPKIKAETDSDPMVPSCSLSLPLSISTTEAVSFHKEK
                     SVYLSSKLKQLLQTQDKLTPAGISATEIAKLGPVCVSAPASMLPVTSSRFKRRTSSPP
                     SSPQHSPALRDFGKPSDGKAAWTDAGLTSKKSKLESHSDSPAWSLSGRDERETVSPPC
                     FDEYKMSKEWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKTPVQWESVLDLSVHKKHC
                     SDSEGKEFKESHSVQPTCSAVKKRKPTTCMLQKVLLNEYNGIDLPVENPADGTRSPSP
                     CKSLEAQPDPDLGPGSGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSP
                     PPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSP
                     SPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGD
                     NLEASLPMISFKQEELENEGLKPREEPQSAAEQDVVVQETFNKNFVCNVCESPFLSIK
                     DLTKHLSIHAEEWPFKCEFCVQLFKDKTDLSEHRFLLHGVGNIFVCSVCKKEFAFLCN
                     LQQHQRDLHPDKVCTHHEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELN
                     DSSEELYTTIKIMASGIKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTATNFT
                     THNIPQTFTTAIRCTKCGKGVDNMPELHKHILACASASDKKRYTPKKNPVPLKQTVQP
                     KNGVVVLDNSGKNAFRRMGQPKRLNFSVELSKMSSNKLKLNALKKKNQLVQKAILQKN
                     KSAKQKADLKNACESSSHICPYCNREFTYIGSLNKHAAFSCPKKPLSPPKKKVSHSSK
                     KGGHSSPASSDKNSNSNHRRRTADAEIKMQSMQTPLGKTRARSSGPTQVPLPSSSFRS
                     KQNVKFAASVKSKKPSSSSLRNSSPIRMAKITHVEGKKPKAVAKNHSAQLSSKTSRSL
                     HVRVQKSKAVLQSKSTLASKKRTDRFNIKSRERSGGPVTRSLQLAAAADLSENKREDG
                     SAKQELKDFSYSLRLASRCSPPAAPYITRQYRKVKAPAAAQFQGPFFKE"
ORIGIN      
        1 ggttcatgta atcaaagaag tttctttgtt gtgtgtatct ttacagaaca caacaggaat
       61 tgaaaatgaa tcagattgat tcttattacg aacctggtca cccaaaggag ctcggttctc
      121 tgcagtctag gaactgtttt gttggaggag tcttgatcct gcgttagaat ggttaacact
      181 actgagcctg tggcggccac cgagaccctg gctgaggtac ccgaacatgt gctgcgagga
      241 cttccggagg aagtgaggct tttcccttct gctgttgaca agacccggat tggtgtctgg
      301 gccactaaac caattttaaa aggcaaaaaa tttgggccat ttgttggtga taagaaaaaa
      361 agatctcagg ttaagaataa tgtatacatg tgggaggtgt attacccaaa tttgggatgg
      421 atgtgcattg atgccactga tccagagaag ggaaactggc tgcgatatgt gaattgggct
      481 tgctcaggag aagagcaaaa tttattccca ctggaaatca acagagccat ttactataaa
      541 actttaaagc caatcgcgcc gggcgaggag ctcctggtct ggtacaatgg ggaagacaac
      601 cctgagatag cagctgcgat tgaggaagag cgagccagcg cccggagcaa gcggagctcc
      661 cccaagagcc ggaaagggaa gaaaaaatcc caggaaaata aaaacaaagg aaacaaaatc
      721 caagacatac aactgaagac aagtgagcca gatttcacct ctgcaaatat gagagattct
      781 gcagaaggtc ctaaagaaga cgaagagaag ccttcagcct cagcacttga gcagccggcc
      841 accctccagg aggtggccag tcaggaggtg cctccagaac tagcaacccc tgcccctgcc
      901 tgggagccac agccagaacc agacgagcga ttagaagcgg cagcttgtga ggtgaatgat
      961 ttgggggaag aggaggagga ggaagaggag gaggatgaag aagaagaaga agatgatgat
     1021 gatgatgagt tggaagacga gggggaagaa gaagccagca tgccaaatga aaattctgtg
     1081 aaagagccag aaatacggtg tgatgagaag ccagaagatt tattagagga accaaaaaca
     1141 acttcagaag aaactcttga agactgctca gaggtaacac ctgccatgca aatccccaga
     1201 actaaagaag aggccaatgg tgatgtattt gaaacgttta tgtttccgtg tcaacattgt
     1261 gaaaggaagt ttacaaccaa acaggggctt gagcgtcaca tgcatatcca tatatccacc
     1321 gtcaatcatg ctttcaaatg caagtactgt gggaaagcct ttggcacaca gattaaccgg
     1381 cggcgacatg agcggcgcca tgaagcaggg ttaaagcgga aacccagcca aacactacag
     1441 ccgtcagagg atctggctga tggcaaagca tctggagaaa acgttgcttc aaaagatgat
     1501 tcgagtcctc ccagtcttgg gccagactgt ctgatcatga attcagagaa ggcttcccaa
     1561 gacacaataa attcttctgt cgtagaagag aatggggaag ttaaagaact tcatccgtgc
     1621 aaatattgta aaaaggtttt tggaactcat actaatatga gacggcatca gcgtagagtt
     1681 cacgaacgtc atctgattcc caaaggtgta cggcgaaaag gaggccttga agagccccag
     1741 cctccagcag aacaggccca ggccacccag aacgtgtatg taccaagcac agagccggag
     1801 gaggaagggg aagcagatga tgtgtacatc atggacattt ctagcaatat ctctgaaaac
     1861 ttaaattact atattgatgg taaaattcaa actaataaca acactagtaa ctgtgatgtg
     1921 attgagatgg agtctgcttc ggcagatttg tatggtataa attgtctgct cactccagtt
     1981 acagtggaaa ttactcaaaa tataaagacc acacaggtcc ctgtaacaga agatcttcct
     2041 aaagagcctt tgggcagcac aaatagtgag gccaagaagc ggagaactgc gagcccacct
     2101 gcactgccca aaattaaggc cgaaacagac tctgacccca tggtcccctc ttgctcttta
     2161 agtcttcctc ttagcatatc aacaacagag gcagtgtctt tccacaaaga gaaaagtgtt
     2221 tatttgtcat caaagctcaa acaacttctt caaacccaag ataaactaac tcctgcaggg
     2281 atttcagcaa ctgaaatagc taaattaggt cctgtttgtg tgtctgctcc tgcatcaatg
     2341 ttgcctgtga cctcaagtag gtttaagagg cggaccagct ctcctcccag ttctccacag
     2401 cacagtcctg cccttcgaga ctttggaaag ccaagtgatg ggaaagcagc atggaccgat
     2461 gccgggctga cttccaaaaa atccaaatta gaaagtcaca gcgactcacc agcatggagt
     2521 ttgtctggga gagatgagag agaaactgtg agccctccat gctttgatga atataaaatg
     2581 tctaaagagt ggacagctag ttctgctttt agcagtgtgt gcaaccagca gccactggat
     2641 ttatccagcg gtgtcaaaca gaaggctgag ggtacaggca agactccagt ccagtgggaa
     2701 tctgtcttag atctcagtgt gcataaaaag cattgtagtg actctgaagg caaggaattc
     2761 aaagaaagtc attcagtgca gcctacgtgt agtgctgtaa agaaaaggaa accaaccacc
     2821 tgcatgctgc agaaggttct tctcaatgaa tataatggca tcgatttacc tgtagaaaac
     2881 cctgcagatg ggaccaggag cccaagtcct tgtaaatccc tagaagctca gccagatcct
     2941 gacctcggtc cgggctctgg tttccctgcc cctactgttg agtccacacc tgatgtttgt
     3001 ccttcatcac ctgccctgca gacaccctcc ctttcatccg gtcagctgcc tcctctcttg
     3061 atccccacag atccctcttc ccctccaccc tgtcccccgg tattaactgt tgccactccg
     3121 ccccctcccc tccttcctac cgtacctctt ccagccccct cttccagtgc atctccacac
     3181 ccatgcccct ctccactctc aaatgccacc gcacagtccc cacttccaat tctgtcccca
     3241 acagtgtccc cctctccctc tcccattcct cccgtggagc ccctgatgtc tgccgcctca
     3301 cccgggcctc caacactttc ttcttcctcc tcttcatctt cctcctcctc ttcgttttct
     3361 tcttcatctt cctcctcttc tccttctcca cctcctctct ccgcaatatc atctgttgtt
     3421 tcctctggtg ataatctgga ggcttctctc cccatgatat ctttcaaaca ggaggaatta
     3481 gagaatgaag gtctgaaacc cagggaagag ccccagtctg ctgctgaaca ggatgttgtt
     3541 gttcaggaaa cattcaacaa aaactttgtt tgcaacgtct gtgaatcacc ttttctttcc
     3601 attaaagatc taaccaaaca tttatctatt catgctgaag aatggccctt caaatgtgaa
     3661 ttttgtgtgc agctttttaa ggataaaacg gacttgtcag aacatcgctt tttgcttcat
     3721 ggagttggga atatctttgt gtgttctgtt tgtaaaaaag aatttgcttt tttgtgcaat
     3781 ttgcagcagc accagcgaga tctccaccca gataaggtgt gcacacatca cgagtttgaa
     3841 agcgggactc tgaggcccca gaactttaca gatcccagca aggcccatgt agagcatatg
     3901 cagagcttgc cagaagatcc tttagaaact tctaaagaag aagaggagtt aaatgattcc
     3961 tctgaagagc tttacacgac tataaaaata atggcttctg gaataaagac aaaagatcca
     4021 gatgttcgat tgggcctcaa tcagcattac ccaagcttta aaccacctcc atttcagtac
     4081 catcaccgta accccatggg gattggtgtg acagccacaa atttcactac acacaatatt
     4141 ccacagactt tcactaccgc cattcgctgc acaaagtgtg gaaaaggtgt cgacaatatg
     4201 ccggagttgc acaaacatat cctggcttgt gcttctgcaa gtgacaagaa gaggtacacg
     4261 cctaagaaaa acccagtacc attaaaacaa actgtgcaac ccaaaaatgg cgtggtggtt
     4321 ttagataact ctgggaaaaa tgccttccga cgaatgggac agcccaaaag gcttaacttt
     4381 agtgttgagc tcagcaaaat gtcgtcgaat aagctcaaat taaatgcatt gaagaaaaaa
     4441 aatcagctag tacagaaagc aattcttcag aaaaacaaat ctgcaaagca gaaggccgac
     4501 ttgaaaaatg cttgtgagtc atcctctcac atctgccctt actgtaatcg agagttcact
     4561 tacattggaa gcctgaataa acacgccgcc ttcagctgtc ccaaaaaacc cctttctcct
     4621 cccaaaaaaa aagtttctca ttcatctaag aaaggtggac actcatcacc tgcaagtagt
     4681 gacaaaaaca gtaacagcaa ccaccgcaga cggacagcgg atgcggagat taaaatgcaa
     4741 agcatgcaga ctccgttggg caagaccaga gcccgcagct caggccccac ccaagtccca
     4801 cttccctcct catccttcag gtccaagcag aacgtcaagt ttgcagcttc ggtgaaatcc
     4861 aaaaaaccaa gctcctcctc tttaaggaac tccagcccga taagaatggc caaaataact
     4921 catgttgagg ggaaaaaacc taaagctgtg gccaagaatc attctgctca gctttccagc
     4981 aaaacatcac ggagcctgca cgtgagggta cagaaaagca aagctgtttt acaaagcaaa
     5041 tccaccttgg cgagtaagaa aagaacagac cggttcaata taaaatctag agagcggagt
     5101 ggggggccag tcacccggag ccttcagctg gcagctgctg ctgacttgag tgagaacaag
     5161 agagaggacg gcagcgccaa gcaggagctg aaggacttca gctacagcct ccgcttggcg
     5221 tcccgatgct ctccaccagc ggccccgtac atcaccaggc agtataggaa ggtcaaagct
     5281 ccagctgcag cccagttcca gggaccattc ttcaaagagt agacactctg gctgctccct
     5341 gacag
//
