LOCUS       XM_047429995            6707 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens PR/SET domain 2 (PRDM2), transcript variant
            X2, mRNA.
ACCESSION   XM_047429995
VERSION     XM_047429995.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6707
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..6707
                     /gene="PRDM2"
                     /gene_synonym="HUMHOXY1; KMT8; KMT8A; MTB-ZF; RIZ; RIZ1;
                     RIZ2"
                     /note="PR/SET domain 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 5 ESTs, 1412
                     long SRA reads, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:7799"
                     /db_xref="HGNC:HGNC:9347"
                     /db_xref="MIM:601196"
     CDS             327..5153
                     /gene="PRDM2"
                     /gene_synonym="HUMHOXY1; KMT8; KMT8A; MTB-ZF; RIZ; RIZ1;
                     RIZ2"
                     /codon_start=1
                     /product="PR domain zinc finger protein 2 isoform X2"
                     /protein_id="XP_047285951.1"
                     /db_xref="GeneID:7799"
                     /db_xref="HGNC:HGNC:9347"
                     /db_xref="MIM:601196"
                     /translation="MWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEI
                     NRAIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRKGKKKSQ
                     ENKNKGNKIQDIQLKTSEPDFTSANMRDSAEGPKEDEEKPSASALEQPATLQEVASQE
                     VPPELATPAPAWEPQPEPDERLEAAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDE
                     GEEEASMPNENSVKEPEIRCDEKPEDLLEEPKTTSEETLEDCSEVTPAMQIPRTKEEA
                     NGDVFETFMFPCQHCERKFTTKQGLERHMHIHISTVNHAFKCKYCGKAFGTQINRRRH
                     ERRHEAGLKRKPSQTLQPSEDLADGKASGENVASKDDSSPPSLGPDCLIMNSEKASQD
                     TINSSVVEENGEVKELHPCKYCKKVFGTHTNMRRHQRRVHERHLIPKGVRRKGGLEEP
                     QPPAEQAQATQNVYVPSTEPEEEGEADDVYIMDISSNISENLNYYIDGKIQTNNNTSN
                     CDVIEMESASADLYGINCLLTPVTVEITQNIKTTQVPVTEDLPKEPLGSTNSEAKKRR
                     TASPPALPKIKAETDSDPMVPSCSLSLPLSISTTEAVSFHKEKSVYLSSKLKQLLQTQ
                     DKLTPAGISATEIAKLGPVCVSAPASMLPVTSSRFKRRTSSPPSSPQHSPALRDFGKP
                     SDGKAAWTDAGLTSKKSKLESHSDSPAWSLSGRDERETVSPPCFDEYKMSKEWTASSA
                     FSSVCNQQPLDLSSGVKQKAEGTGKTPVQWESVLDLSVHKKHCSDSEGKEFKESHSVQ
                     PTCSAVKKRKPTTCMLQKVLLNEYNGIDLPVENPADGTRSPSPCKSLEAQPDPDLGPG
                     SGFPAPTVESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPP
                     LLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASP
                     GPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLPMISFKQEE
                     LENEGLKPREEPQSAAEQDVVVQETFNKNFVCNVCESPFLSIKDLTKHLSIHAEEWPF
                     KCEFCVQLFKDKTDLSEHRFLLHGVGNIFVCSVCKKEFAFLCNLQQHQRDLHPDKVCT
                     HHEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELNDSSEELYTTIKIMAS
                     GIKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTATNFTTHNIPQTFTTAIRCT
                     KCGKGVDNMPELHKHILACASASDKKRYTPKKNPVPLKQTVQPKNGVVVLDNSGKNAF
                     RRMGQPKRLNFSVELSKMSSNKLKLNALKKKNQLVQKAILQKNKSAKQKADLKNACES
                     SSHICPYCNREFTYIGSLNKHAAFSCPKKPLSPPKKKVSHSSKKGGHSSPASSDKNSN
                     SNHRRRTADAEIKMQSMQTPLGKTRARSSGPTQVPLPSSSFRSKQNVKFAASVKSKKP
                     SSSSLRNSSPIRMAKITHVEGKKPKAVAKNHSAQLSSKTSRSLHVRVQKSKAVLQSKS
                     TLASKKRTDRFNIKSRERSGGPVTRSLQLAAAADLSENKREDGSAKQELKDFRNFL"
     polyA_site      6707
                     /gene="PRDM2"
                     /gene_synonym="HUMHOXY1; KMT8; KMT8A; MTB-ZF; RIZ; RIZ1;
                     RIZ2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acttccgact ggagtcaaga tggcggcggc gcggccgcgg gcgccggggc cggcgaaaca
       61 gcggcggcgg cggcggccct cggtgctctg aggcgctggc gcggcgggcg cggaacacta
      121 ctgagcctgt ggcggccacc gagaccctgg ctgaggtacc cgaacatgtg ctgcgaggac
      181 ttccggagga agtgaggctt ttcccttctg ctgttgacaa gacccggatt ggtgtctggg
      241 ccactaaacc aattttaaaa ggcaaaaaat ttgggccatt tgttggtgat aagaaaaaaa
      301 gatctcaggt taagaataat gtatacatgt gggaggtgta ttacccaaat ttgggatgga
      361 tgtgcattga tgccactgat ccagagaagg gaaactggct gcgatatgtg aattgggctt
      421 gctcaggaga agagcaaaat ttattcccac tggaaatcaa cagagccatt tactataaaa
      481 ctttaaagcc aatcgcgccg ggcgaggagc tcctggtctg gtacaatggg gaagacaacc
      541 ctgagatagc agctgcgatt gaggaagagc gagccagcgc ccggagcaag cggagctccc
      601 ccaagagccg gaaagggaag aaaaaatccc aggaaaataa aaacaaagga aacaaaatcc
      661 aagacataca actgaagaca agtgagccag atttcacctc tgcaaatatg agagattctg
      721 cagaaggtcc taaagaagac gaagagaagc cttcagcctc agcacttgag cagccggcca
      781 ccctccagga ggtggccagt caggaggtgc ctccagaact agcaacccct gcccctgcct
      841 gggagccaca gccagaacca gacgagcgat tagaagcggc agcttgtgag gtgaatgatt
      901 tgggggaaga ggaggaggag gaagaggagg aggatgaaga agaagaagaa gatgatgatg
      961 atgatgagtt ggaagacgag ggggaagaag aagccagcat gccaaatgaa aattctgtga
     1021 aagagccaga aatacggtgt gatgagaagc cagaagattt attagaggaa ccaaaaacaa
     1081 cttcagaaga aactcttgaa gactgctcag aggtaacacc tgccatgcaa atccccagaa
     1141 ctaaagaaga ggccaatggt gatgtatttg aaacgtttat gtttccgtgt caacattgtg
     1201 aaaggaagtt tacaaccaaa caggggcttg agcgtcacat gcatatccat atatccaccg
     1261 tcaatcatgc tttcaaatgc aagtactgtg ggaaagcctt tggcacacag attaaccggc
     1321 ggcgacatga gcggcgccat gaagcagggt taaagcggaa acccagccaa acactacagc
     1381 cgtcagagga tctggctgat ggcaaagcat ctggagaaaa cgttgcttca aaagatgatt
     1441 cgagtcctcc cagtcttggg ccagactgtc tgatcatgaa ttcagagaag gcttcccaag
     1501 acacaataaa ttcttctgtc gtagaagaga atggggaagt taaagaactt catccgtgca
     1561 aatattgtaa aaaggttttt ggaactcata ctaatatgag acggcatcag cgtagagttc
     1621 acgaacgtca tctgattccc aaaggtgtac ggcgaaaagg aggccttgaa gagccccagc
     1681 ctccagcaga acaggcccag gccacccaga acgtgtatgt accaagcaca gagccggagg
     1741 aggaagggga agcagatgat gtgtacatca tggacatttc tagcaatatc tctgaaaact
     1801 taaattacta tattgatggt aaaattcaaa ctaataacaa cactagtaac tgtgatgtga
     1861 ttgagatgga gtctgcttcg gcagatttgt atggtataaa ttgtctgctc actccagtta
     1921 cagtggaaat tactcaaaat ataaagacca cacaggtccc tgtaacagaa gatcttccta
     1981 aagagccttt gggcagcaca aatagtgagg ccaagaagcg gagaactgcg agcccacctg
     2041 cactgcccaa aattaaggcc gaaacagact ctgaccccat ggtcccctct tgctctttaa
     2101 gtcttcctct tagcatatca acaacagagg cagtgtcttt ccacaaagag aaaagtgttt
     2161 atttgtcatc aaagctcaaa caacttcttc aaacccaaga taaactaact cctgcaggga
     2221 tttcagcaac tgaaatagct aaattaggtc ctgtttgtgt gtctgctcct gcatcaatgt
     2281 tgcctgtgac ctcaagtagg tttaagaggc ggaccagctc tcctcccagt tctccacagc
     2341 acagtcctgc ccttcgagac tttggaaagc caagtgatgg gaaagcagca tggaccgatg
     2401 ccgggctgac ttccaaaaaa tccaaattag aaagtcacag cgactcacca gcatggagtt
     2461 tgtctgggag agatgagaga gaaactgtga gccctccatg ctttgatgaa tataaaatgt
     2521 ctaaagagtg gacagctagt tctgctttta gcagtgtgtg caaccagcag ccactggatt
     2581 tatccagcgg tgtcaaacag aaggctgagg gtacaggcaa gactccagtc cagtgggaat
     2641 ctgtcttaga tctcagtgtg cataaaaagc attgtagtga ctctgaaggc aaggaattca
     2701 aagaaagtca ttcagtgcag cctacgtgta gtgctgtaaa gaaaaggaaa ccaaccacct
     2761 gcatgctgca gaaggttctt ctcaatgaat ataatggcat cgatttacct gtagaaaacc
     2821 ctgcagatgg gaccaggagc ccaagtcctt gtaaatccct agaagctcag ccagatcctg
     2881 acctcggtcc gggctctggt ttccctgccc ctactgttga gtccacacct gatgtttgtc
     2941 cttcatcacc tgccctgcag acaccctccc tttcatccgg tcagctgcct cctctcttga
     3001 tccccacaga tccctcttcc cctccaccct gtcccccggt attaactgtt gccactccgc
     3061 cccctcccct ccttcctacc gtacctcttc cagccccctc ttccagtgca tctccacacc
     3121 catgcccctc tccactctca aatgccaccg cacagtcccc acttccaatt ctgtccccaa
     3181 cagtgtcccc ctctccctct cccattcctc ccgtggagcc cctgatgtct gccgcctcac
     3241 ccgggcctcc aacactttct tcttcctcct cttcatcttc ctcctcctct tcgttttctt
     3301 cttcatcttc ctcctcttct ccttctccac ctcctctctc cgcaatatca tctgttgttt
     3361 cctctggtga taatctggag gcttctctcc ccatgatatc tttcaaacag gaggaattag
     3421 agaatgaagg tctgaaaccc agggaagagc cccagtctgc tgctgaacag gatgttgttg
     3481 ttcaggaaac attcaacaaa aactttgttt gcaacgtctg tgaatcacct tttctttcca
     3541 ttaaagatct aaccaaacat ttatctattc atgctgaaga atggcccttc aaatgtgaat
     3601 tttgtgtgca gctttttaag gataaaacgg acttgtcaga acatcgcttt ttgcttcatg
     3661 gagttgggaa tatctttgtg tgttctgttt gtaaaaaaga atttgctttt ttgtgcaatt
     3721 tgcagcagca ccagcgagat ctccacccag ataaggtgtg cacacatcac gagtttgaaa
     3781 gcgggactct gaggccccag aactttacag atcccagcaa ggcccatgta gagcatatgc
     3841 agagcttgcc agaagatcct ttagaaactt ctaaagaaga agaggagtta aatgattcct
     3901 ctgaagagct ttacacgact ataaaaataa tggcttctgg aataaagaca aaagatccag
     3961 atgttcgatt gggcctcaat cagcattacc caagctttaa accacctcca tttcagtacc
     4021 atcaccgtaa ccccatgggg attggtgtga cagccacaaa tttcactaca cacaatattc
     4081 cacagacttt cactaccgcc attcgctgca caaagtgtgg aaaaggtgtc gacaatatgc
     4141 cggagttgca caaacatatc ctggcttgtg cttctgcaag tgacaagaag aggtacacgc
     4201 ctaagaaaaa cccagtacca ttaaaacaaa ctgtgcaacc caaaaatggc gtggtggttt
     4261 tagataactc tgggaaaaat gccttccgac gaatgggaca gcccaaaagg cttaacttta
     4321 gtgttgagct cagcaaaatg tcgtcgaata agctcaaatt aaatgcattg aagaaaaaaa
     4381 atcagctagt acagaaagca attcttcaga aaaacaaatc tgcaaagcag aaggccgact
     4441 tgaaaaatgc ttgtgagtca tcctctcaca tctgccctta ctgtaatcga gagttcactt
     4501 acattggaag cctgaataaa cacgccgcct tcagctgtcc caaaaaaccc ctttctcctc
     4561 ccaaaaaaaa agtttctcat tcatctaaga aaggtggaca ctcatcacct gcaagtagtg
     4621 acaaaaacag taacagcaac caccgcagac ggacagcgga tgcggagatt aaaatgcaaa
     4681 gcatgcagac tccgttgggc aagaccagag cccgcagctc aggccccacc caagtcccac
     4741 ttccctcctc atccttcagg tccaagcaga acgtcaagtt tgcagcttcg gtgaaatcca
     4801 aaaaaccaag ctcctcctct ttaaggaact ccagcccgat aagaatggcc aaaataactc
     4861 atgttgaggg gaaaaaacct aaagctgtgg ccaagaatca ttctgctcag ctttccagca
     4921 aaacatcacg gagcctgcac gtgagggtac agaaaagcaa agctgtttta caaagcaaat
     4981 ccaccttggc gagtaagaaa agaacagacc ggttcaatat aaaatctaga gagcggagtg
     5041 gggggccagt cacccggagc cttcagctgg cagctgctgc tgacttgagt gagaacaaga
     5101 gagaggacgg cagcgccaag caggagctga aggacttcag gaacttcctg tagaaaagcc
     5161 cccaaaacaa aacaaacctt aattgactaa aaagtattgc atgctcaact taggataagc
     5221 actacggcaa aggatacgaa atctaccaag cttgcaagac cagttgaagc tgactcaaaa
     5281 atcctaacat tcagctgatt gccggcaggc ttagagtcag gcatctgctg cttcggtggg
     5341 ggcccaacgc gcatgctggg cgcccgggtg attgagatcc aaagagaagg gcactgtaag
     5401 acaggccaga tgaactggct cctcgtcatg ggactggtac ctcagatctg agcatggccc
     5461 ttgtttttgg cacgtagcag agaaaggatt gatttgaact taaccttgca aagcaagttg
     5521 cctgttttag cagtagtttg ttgtaggttt cagggatgac agatttggat gcactcattt
     5581 aaaacgtttt ggtcacatat cagctcttga tgcctttctt ttaaattaat tatagacaga
     5641 gagaggcatt tagctgatct cttacccctg gtatttcttt tttttgttgt tttcgttttt
     5701 ttaaatcaca agtagattgc cagcgtaatg gagaggaaac cagattggat atggactctt
     5761 ttttatgcct attctggtgt tgcgtttgta tatccaaatg gacgttatcc tctcagattc
     5821 ttatctggca ctaatttata actattatat tatcagagac tatgtagcaa tatatcagtg
     5881 cacaggcgca tcccaggcct gtacagatgt atgtctacac gtaagtataa atgaatttgc
     5941 ataccaggtt ttacacttgc atctctaata gagattaaaa acaacaaatt ggcctcttcc
     6001 taagtatatt aatatcattt atccttacat tttatgcctc cccctaaatt aatgactgag
     6061 ttggtggaaa gcggctaggt tttattcata ctgttttttg ttctcaactt caaaagtaat
     6121 ctacctctga aaaatttgta gtttaatatt tgtttggtga atttgtgcca ctttaatcct
     6181 tccactatca ttcccatttt gttacatttc tgttatgggg actttatgtt gaaatattgt
     6241 ataaagcatt tgtagcaatt taaaaataaa atatttaaaa ttatttaaat tgttttggac
     6301 gcttcaattg tattatatgt gatttacatt tcactttttt tgttggcgtt gttaacccgg
     6361 agagtgctcc tgtattgaac tttgctgtta gttattttat tgcttctttt tggagagtgc
     6421 tataaaagac tattctaatg aaaacattaa aatttacaat ttgacataca aaaaggggtt
     6481 gtccattgat tttaaccaat gtagcactga gagagagaga ggttaattat agatagacaa
     6541 gagtggtgtt tgttgttttt cccctcccag cattgaaatc attggggctt gtcagatgta
     6601 ttaaaaaaag atttgttgtg ctattgctgc aaacacttaa taactagagg agaatttaaa
     6661 caatgcattt tatattattg taaccaataa aaaactttct aaacatc
//
