LOCUS       XM_017011187            5017 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens PR/SET domain 1 (PRDM1), transcript variant
            X3, mRNA.
ACCESSION   XM_017011187
VERSION     XM_017011187.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017011187.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5017
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..5017
                     /gene="PRDM1"
                     /gene_synonym="BLIMP-1; BLIMP1; PRDI-BF1"
                     /note="PR/SET domain 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 10 ESTs, 165 long
                     SRA reads, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:639"
                     /db_xref="HGNC:HGNC:9346"
                     /db_xref="MIM:603423"
     CDS             196..2565
                     /gene="PRDM1"
                     /gene_synonym="BLIMP-1; BLIMP1; PRDI-BF1"
                     /codon_start=1
                     /product="PR domain zinc finger protein 1 isoform X3"
                     /protein_id="XP_016866676.1"
                     /db_xref="GeneID:639"
                     /db_xref="HGNC:HGNC:9346"
                     /db_xref="MIM:603423"
                     /translation="MKMDMEDADMTLWTEAEFEEKCTYIVNDHPWDSGADGGTSVQAE
                     ASLPRNLLFKYATNSEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVPKNANRKYFWRI
                     YSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQEL
                     LVWYCRDFAERLHYPYPGELTMMNLTQTQSSLKQPSTEKNELCPKNVPKREYSVKEIL
                     KLDSNPSKGKDLYRSNISPLTSEKDLDDFRRRGSPEMPFYPRVVYPIRAPLPEDFLKA
                     SLAYGIERPTYITRSPIPSSTTPSPSARSSPDQSLKSSSPHSSPGNTVSPVGPGSQEH
                     RDSYAYLNASYGTEGLGSYPGYAPLPHLPPAFIPSYNAHYPKFLLPPYGMNCNGLSAV
                     SSMNGINNFGLFPRLCPVYSNLLGGGSLPHPMLNPTSLPSSLPSDGARRLLQPEHPRE
                     VLVPAPHSAFSFTGAAASMKDKACSPTSGSPTAGTAATAEHVVQPKATSAAMAAPSSD
                     EAMNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCAKTFGQLSNLKVHLRVHSGERP
                     FKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQ
                     CKVCPAKFTQFVHLKLHKRLHTRERPHKCSQCHKNYIHLCSLKVHLKGNCAAAPAPGL
                     PLEDLTRINEEIEKFDISDNADRLEDVEDDISVISVVEKEILAVVRKEKEETGLKVSL
                     QRNMGNGLLSSGCSLYESSDLPLMKLPPSNPLPLVPVKVKQETVEPMDP"
ORIGIN      
        1 attctggggt gggagagcag ccagtggcct ctgcccggca gggctctgcg ctggggagag
       61 ggagagttct gctcaggggc agccctttca gaggtcccga ggaagtttcc aggcggcttg
      121 agtggaaaag ctgcccccaa gtgtaactcc agcactgtga ggtttcaggg attggcagag
      181 gggaccaagg ggaccatgaa aatggacatg gaggatgcgg atatgactct gtggacagag
      241 gctgagtttg aagagaagtg tacatacatt gtgaacgacc acccctggga ttctggtgct
      301 gatggcggta cttcggttca ggcggaggca tccttaccaa ggaatctgct tttcaagtat
      361 gccaccaaca gtgaagaggt tattggagtg atgagtaaag aatacatacc aaagggcaca
      421 cgttttggac ccctaatagg tgaaatctac accaatgaca cagttcctaa gaacgccaac
      481 aggaaatatt tttggaggat ctattccaga ggggagcttc accacttcat tgacggcttt
      541 aatgaagaga aaagcaactg gatgcgctat gtgaatccag cacactctcc ccgggagcaa
      601 aacctggctg cgtgtcagaa cgggatgaac atctacttct acaccattaa gcccatccct
      661 gccaaccagg aacttcttgt gtggtattgt cgggactttg cagaaaggct tcactaccct
      721 tatcccggag agctgacaat gatgaatctc acacaaacac agagcagtct aaagcaaccg
      781 agcactgaga aaaatgaact ctgcccaaag aatgtcccaa agagagagta cagcgtgaaa
      841 gaaatcctaa aattggactc caacccctcc aaaggaaagg acctctaccg ttctaacatt
      901 tcacccctca catcagaaaa ggacctcgat gactttagaa gacgtgggag ccccgaaatg
      961 cccttctacc ctcgggtcgt ttaccccatc cgggcccctc tgccagaaga ctttttgaaa
     1021 gcttccctgg cctacgggat cgagagaccc acgtacatca ctcgctcccc cattccatcc
     1081 tccaccactc caagcccctc tgcaagaagc agccccgacc aaagcctcaa gagctccagc
     1141 cctcacagca gccctgggaa tacggtgtcc cctgtgggcc ccggctctca agagcaccgg
     1201 gactcctacg cttacttgaa cgcgtcctac ggcacggaag gtttgggctc ctaccctggc
     1261 tacgcacccc tgccccacct cccgccagct ttcatcccct cgtacaacgc tcactacccc
     1321 aagttcctct tgccccccta cggcatgaat tgtaatggcc tgagcgctgt gagcagcatg
     1381 aatggcatca acaactttgg cctcttcccg aggctgtgcc ctgtctacag caatctcctc
     1441 ggtgggggca gcctgcccca ccccatgctc aaccccactt ctctcccgag ctcgctgccc
     1501 tcagatggag cccggaggtt gctccagccg gagcatccca gggaggtgct tgtcccggcg
     1561 ccccacagtg ccttctcctt taccggggcc gccgccagca tgaaggacaa ggcctgtagc
     1621 cccacaagcg ggtctcccac ggcgggaaca gccgccacgg cagaacatgt ggtgcagccc
     1681 aaagctacct cagcagcgat ggcagccccc agcagcgacg aagccatgaa tctcattaaa
     1741 aacaaaagaa acatgaccgg ctacaagacc cttccctacc cgctgaagaa gcagaacggc
     1801 aagatcaagt acgaatgcaa cgtttgcgcc aagactttcg gccagctctc caatctgaag
     1861 gtccacctga gagtgcacag tggagaacgg cctttcaaat gtcagacttg caacaagggc
     1921 tttactcagc tcgcccacct gcagaaacac tacctggtac acacgggaga aaagccacat
     1981 gaatgccagg tctgccacaa gagatttagc agcaccagca atctcaagac ccacctgcga
     2041 ctccattctg gagagaaacc ataccaatgc aaggtgtgcc ctgccaagtt cacccagttt
     2101 gtgcacctga aactgcacaa gcgtctgcac acccgggagc ggccccacaa gtgctcccag
     2161 tgccacaaga actacatcca tctctgtagc ctcaaggttc acctgaaagg gaactgcgct
     2221 gcggccccgg cgcctgggct gcccttggaa gatctgaccc gaatcaatga agaaatcgag
     2281 aagtttgaca tcagtgacaa tgctgaccgg ctcgaggacg tggaggatga catcagtgtg
     2341 atctctgtag tggagaagga aattctggcc gtggtcagaa aagagaaaga agaaactggc
     2401 ctgaaagtgt ctttgcaaag aaacatgggg aatggactcc tctcctcagg gtgcagcctt
     2461 tatgagtcat cagatctacc cctcatgaag ttgcctccca gcaacccact acctctggta
     2521 cctgtaaagg tcaaacaaga aacagttgaa ccaatggatc cttaagattt tcagaaaaca
     2581 cttattttgt ttcttaagtt atgacttggt gagtcagggt gcctgtagga agtggcttgt
     2641 acataatccc agctctgcaa agctctctcg acagcaaatg gtttcccctc acctctggaa
     2701 ttaaagaagg aactccaaag ttactgaaat ctcagggcat gaacaaggca aaggccatat
     2761 atatatatat atatatatct gtatacatat tatatatact tatttacacc tgtgtctata
     2821 tatttgcccc tgtgtatttt gaatatttgt gtggacatgt ttgcatagcc ttcccattac
     2881 taagactatt acctagtcat aattattttt tcaatgataa tccttcataa tttattatac
     2941 aatttatcat tcagaaagca ataattaaaa aagtttacaa tgactggaaa gattccttgt
     3001 aatttgagta taaatgtatt tttgtcttgt ggccattctt tgtagataat ttctgcacat
     3061 ctgtataagt acctaagatt tagttaaaca aatatatgac ttcagtcaac ctctctctct
     3121 aataatggtt tgaaaatgag gtttgggtaa ttgccaatgt tggacagttg atgtgttcat
     3181 tcctgggatc ctatcatttg aacagcattg tacataactt gggggtatgt gtgcaggatt
     3241 acccaagaat aacttaagta gaagaaacaa gaaagggaat cttgtatatt tttgttgata
     3301 gttcatgttt ttcccccagc cacaatttta ccggaagggt gacaggaagg ctttaccaac
     3361 ctgtctctcc ctccaaaaga gcagaatcct cccaccgccc tgccctcccc accgagtcct
     3421 gtggccattc agagcggcca catgactttt gcatccattg tattatcaga aaatgtgaag
     3481 aagaaaaaaa tgccatgttt taaaaccact gcgaaaattt ccccaaagca taggtggctt
     3541 tgtgtgtgtg cgatttgggg gcttgagtct gggtggtgtt ttgttgttgg tttttgttgc
     3601 tttttttttt tttttttttt taatgtcaaa attgcacaaa catggtgctc taccaggaag
     3661 gattcgaggt agataggctc aggccacact ttaaaaacaa acacacaaac aacaaaaaac
     3721 gggtattcta gtcatcttgg ggtaaaagcg ggtaatgaac attcctatcc ccaacacatc
     3781 aattgtattt tttctgtaaa actcagattt tcctcagtat ttgtgttttt acattttatg
     3841 gttaatttaa tggaagatga aagggcattg caaagttgtt caacaacagt tacctcattg
     3901 agtgtgtcca gtagtgcagg aaatgatgtc ttatctaatg atttgcttct ctagaggaga
     3961 aaccgagtaa atgtgctcca gcaagataga ctttgtgtta ttctatcttt tattctgcta
     4021 agcccaaaga ttacatgttg gtgttcaaag tgtagcaaaa aatgatgtat atttataaat
     4081 ctatttatac cactatatca tatgtatata tatttataac cacttaaatt gtgagccaag
     4141 ccatgtaaaa gatctacttt ttctaagggc aaaaaaaaaa aaaaaaaaaa aagaacactc
     4201 ctttctgaga ctttgcttaa tacttggtga cctcacaatc acgtcggtat gattgggcac
     4261 ccttgcctac tgtaagagac cctaaaacct tggtgcagtg gtggggacca caaaacaacc
     4321 agggaggaag agatacatca ttttttagta ttaaggacca tctaagacag ctctattttt
     4381 tttttgccac tttatgatta tgtggtcaca cccaagtcac agaaataaaa aactgacttt
     4441 accgctgcaa tttttctgtt ttcctcctta ctaaatactg atacattact ccaatctatt
     4501 ttataattat atttgacatt ttgttcacat caactaatgt tcacctgtag aagagaacaa
     4561 atttcgaata atccagggaa acccaagagc cttactggtc ttctgtaact tccaagactg
     4621 acagcttttt atgtatcagt gtttgataaa cacagtcctt aactgaaggt aaaccaaagc
     4681 atcacgttga cattagacca aatacttttg attcccaact actcgtttgt tctttttctc
     4741 cttttgtgct ttcccatagt gagaattttt ataaagactt cttgcttctc tcaccatcca
     4801 tccttctctt ttctgcctct tacatgtgaa tgttgagccc acaatcaaca gtggttttat
     4861 tttttcctct actcaaagtt aaaactgacc aaagttactg gctttttact ttgctagaac
     4921 aacaaactat cttatgttta catactggtt tacaatgtta tttatgtgca aattgtcaaa
     4981 atgtaaatta aatataaatg ttcatgcttt accaaaa
//
