LOCUS       NM_001013407            1855 bp    mRNA    linear   PRI 08-APR-2024
DEFINITION  Homo sapiens PRAME family member 5 (PRAMEF5), mRNA.
ACCESSION   NM_001013407 NM_001282323 XM_001128630 XM_001130065
VERSION     NM_001013407.5
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1855)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1855)
  AUTHORS   Gregory,S.G., Barlow,K.F., McLay,K.E., Kaul,R., Swarbreck,D.,
            Dunham,A., Scott,C.E., Howe,K.L., Woodfine,K., Spencer,C.C.,
            Jones,M.C., Gillson,C., Searle,S., Zhou,Y., Kokocinski,F.,
            McDonald,L., Evans,R., Phillips,K., Atkinson,A., Cooper,R.,
            Jones,C., Hall,R.E., Andrews,T.D., Lloyd,C., Ainscough,R.,
            Almeida,J.P., Ambrose,K.D., Anderson,F., Andrew,R.W., Ashwell,R.I.,
            Aubin,K., Babbage,A.K., Bagguley,C.L., Bailey,J., Beasley,H.,
            Bethel,G., Bird,C.P., Bray-Allen,S., Brown,J.Y., Brown,A.J.,
            Buckley,D., Burton,J., Bye,J., Carder,C., Chapman,J.C., Clark,S.Y.,
            Clarke,G., Clee,C., Cobley,V., Collier,R.E., Corby,N.,
            Coville,G.J., Davies,J., Deadman,R., Dunn,M., Earthrowl,M.,
            Ellington,A.G., Errington,H., Frankish,A., Frankland,J., French,L.,
            Garner,P., Garnett,J., Gay,L., Ghori,M.R., Gibson,R., Gilby,L.M.,
            Gillett,W., Glithero,R.J., Grafham,D.V., Griffiths,C.,
            Griffiths-Jones,S., Grocock,R., Hammond,S., Harrison,E.S., Hart,E.,
            Haugen,E., Heath,P.D., Holmes,S., Holt,K., Howden,P.J., Hunt,A.R.,
            Hunt,S.E., Hunter,G., Isherwood,J., James,R., Johnson,C.,
            Johnson,D., Joy,A., Kay,M., Kershaw,J.K., Kibukawa,M.,
            Kimberley,A.M., King,A., Knights,A.J., Lad,H., Laird,G., Lawlor,S.,
            Leongamornlert,D.A., Lloyd,D.M., Loveland,J., Lovell,J., Lush,M.J.,
            Lyne,R., Martin,S., Mashreghi-Mohammadi,M., Matthews,L.,
            Matthews,N.S., McLaren,S., Milne,S., Mistry,S., Moore,M.J.,
            Nickerson,T., O'Dell,C.N., Oliver,K., Palmeiri,A., Palmer,S.A.,
            Parker,A., Patel,D., Pearce,A.V., Peck,A.I., Pelan,S., Phelps,K.,
            Phillimore,B.J., Plumb,R., Rajan,J., Raymond,C., Rouse,G.,
            Saenphimmachak,C., Sehra,H.K., Sheridan,E., Shownkeen,R., Sims,S.,
            Skuce,C.D., Smith,M., Steward,C., Subramanian,S., Sycamore,N.,
            Tracey,A., Tromans,A., Van Helmond,Z., Wall,M., Wallis,J.M.,
            White,S., Whitehead,S.L., Wilkinson,J.E., Willey,D.L., Williams,H.,
            Wilming,L., Wray,P.W., Wu,Z., Coulson,A., Vaudin,M., Sulston,J.E.,
            Durbin,R., Hubbard,T., Wooster,R., Dunham,I., Carter,N.P.,
            McVean,G., Ross,M.T., Harrow,J., Olson,M.V., Beck,S., Rogers,J.,
            Bentley,D.R., Banerjee,R., Bryant,S.P., Burford,D.C., Burrill,W.D.,
            Clegg,S.M., Dhami,P., Dovey,O., Faulkner,L.M., Gribble,S.M.,
            Langford,C.F., Pandian,R.D., Porter,K.M. and Prigmore,E.
  TITLE     The DNA sequence and biological annotation of human chromosome 1
  JOURNAL   Nature 441 (7091), 315-321 (2006)
   PUBMED   16710414
  REMARK    Erratum:[Nature. 2006 Oct 26;443(7114):1013. Banerjee, R [added];
            Bryant, SP [added]; Burford, DC [added]; Burrill, WDH [added];
            Clegg, SM [added]; Dhami, P [added]; Dovey, O [added]; Faulkner, LM
            [added]; Gribble, SM [added]; Langford, CF [added]; Pandian, RD
            [added]; Porter, KM [added]; Prigmore, E]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC244216.2.
            
            On Sep 9, 2021 this sequence version replaced NM_001013407.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC130274.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000622421.3/ ENSP00000480122.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                AC244216.2         58529-58606         c
            79-387              AC244216.2         53249-53557         c
            388-969             AC244216.2         52001-52582         c
            970-1855            AC244216.2         49369-50254         c
FEATURES             Location/Qualifiers
     source          1..1855
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
                     /map="1p36.21"
     gene            1..1855
                     /gene="PRAMEF5"
                     /gene_synonym="PRAMEF23; PRAMEF5L"
                     /note="PRAME family member 5"
                     /db_xref="GeneID:343068"
                     /db_xref="HGNC:HGNC:27995"
     exon            1..78
                     /gene="PRAMEF5"
                     /gene_synonym="PRAMEF23; PRAMEF5L"
                     /inference="alignment:Splign:2.1.0"
     exon            79..387
                     /gene="PRAMEF5"
                     /gene_synonym="PRAMEF23; PRAMEF5L"
                     /inference="alignment:Splign:2.1.0"
     CDS             101..1531
                     /gene="PRAMEF5"
                     /gene_synonym="PRAMEF23; PRAMEF5L"
                     /note="PRAME family member 23"
                     /codon_start=1
                     /product="PRAME family member 5"
                     /protein_id="NP_001013425.2"
                     /db_xref="CCDS:CCDS72708.1"
                     /db_xref="GeneID:343068"
                     /db_xref="HGNC:HGNC:27995"
                     /translation="MSIRTPPRLLELAGRSLLRDQALAMSTLEELPTELFPPLFMEAF
                     SRRRCEALKLMVQAWPFRRLPLRPLIKMPCLEAFQAVLDGLDALLTQGVHPRRWKLQV
                     LDLQDVCENFWMVWSEAMAHGCFLNAKRNKKPVQDCPRMRGQQPLTVFVELWLKNRTL
                     DEYLTCLLLWVKQRKDLLHLCCKKLKILGMPFRNIRSILKMVNLDCIQEVEVNCKWVL
                     PILTQFTPYLGHMRNLQKLVLSHMDVSRYVSPEQKKEIVTQFTTQFLKLCCLQKLSMN
                     SVSFLEGHLDQLLSCLKTSLKVLTITNCVLLESDLKHLSQCPSISQLKTLDLSGIRLT
                     NYSLVPLQILLEKVAATLEYLDLDDCGIIDSQVNAILPALSRCFELNTFSFCGNPISM
                     ATLENLLSHTIILKNLCVELYPAPRESYDADGTLCWSRFPQIRAELMKRVRDLRHPKR
                     ILFCTDCCPDCGNRSFYDLEADQCCC"
     exon            388..969
                     /gene="PRAMEF5"
                     /gene_synonym="PRAMEF23; PRAMEF5L"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1855
                     /gene="PRAMEF5"
                     /gene_synonym="PRAMEF23; PRAMEF5L"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acccaaagtc ttcaagcctg gagttcctgc ttggttcttc ctgaggactg agcaccttct
       61 agactacatc cagatctgtt ttccctgcag attcgtgaag atgagcatcc ggactccacc
      121 cagactcctg gagcttgcag ggcggagcct gctgagggac caagccttgg ccatgtccac
      181 cctggaggag ctgcccacag aacttttccc cccactgttc atggaggcct tcagcaggag
      241 acgctgtgag gccctgaagc tgatggtgca ggcctggccc ttccgccgcc tccctctgag
      301 gcctctgata aagatgcctt gtctggaggc cttccaagct gtgctcgatg ggctggatgc
      361 actgcttacc caaggggttc atcccaggag gtggaaactt caagtgctgg atttacagga
      421 tgtctgtgag aacttctgga tggtttggtc tgaagctatg gcccatgggt gcttcctcaa
      481 tgccaagagg aacaaaaaac cagtgcagga ctgtccaagg atgagaggac agcagccctt
      541 gactgtgttc gtagaacttt ggctcaagaa caggactctg gatgaatacc tcacctgcct
      601 ccttctatgg gtcaagcaga ggaaagattt actacacctg tgctgtaaga agctgaaaat
      661 tttgggaatg cccttccgca atatcagaag catcctgaaa atggtgaacc tagactgtat
      721 ccaggaggtg gaagtgaatt gcaagtgggt actgcccatc ctgacacagt ttaccccata
      781 cctgggccac atgaggaatc ttcagaagct cgttctctcc cacatggatg tctctcgcta
      841 cgtttcccca gagcagaaga aggagattgt tacccagttc accactcagt tcctcaagct
      901 gtgctgcctc caaaagcttt ctatgaactc tgtttctttc ctcgaaggcc acctggacca
      961 gctgctcagc tgtctgaaga cctcgttaaa ggtcctcaca ataactaact gtgtgctttt
     1021 ggaatcagac ttgaagcatc tatcccagtg cccgagtatc agtcaactaa agaccctgga
     1081 cctgagtggc atcagactga ccaattacag tcttgtgcct ctccaaattc tcctagaaaa
     1141 agttgcagcc acccttgagt acctggattt agatgactgt ggcatcatag actcccaagt
     1201 caacgccatc ctgcctgccc tgagccgctg ctttgagctc aacaccttca gcttctgtgg
     1261 aaatcccatc tccatggcca ccctggagaa cctgctgagc cacacaatca tactcaaaaa
     1321 cttatgcgtg gagctgtatc ctgccccccg ggagagttat gatgctgatg gtactctctg
     1381 ctggagcaga tttcctcaaa ttagggctga gctgatgaag agagtgaggg acttaaggca
     1441 ccccaagagg atcttgttct gtactgactg ctgccctgac tgtggcaaca ggtcatttta
     1501 tgacctggag gcagatcaat gctgctgttg aatgcctgcc tatttgggtg gatatgtcaa
     1561 acgctttctt ctggacactt ggaaactaaa acctaggtct taggtacatc ctatagggag
     1621 cacagaaccc atcatttcac acatgggctc tgaaagtggg aaaggaaagg tgatcaagca
     1681 ggggcaggac ttgggggaag tgttgccatg gattcgatgg gactttgggg acctgtgtcc
     1741 tgtagagtgg aaaatgggaa tttgaatgtc tagagtggag gcttgagaat acttgaggga
     1801 gttactcttg gatgcatggt tgtaaagaaa caatcagaaa taaaggaaaa ctgag
//
