LOCUS       XM_047429777            3955 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens PTPRF interacting protein alpha 2 (PPFIA2),
            transcript variant X9, mRNA.
ACCESSION   XM_047429777
VERSION     XM_047429777.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000012.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3955
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="12"
     gene            1..3955
                     /gene="PPFIA2"
                     /note="PTPRF interacting protein alpha 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 21 ESTs, 45 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:8499"
                     /db_xref="HGNC:HGNC:9246"
                     /db_xref="MIM:603143"
     CDS             182..3925
                     /gene="PPFIA2"
                     /codon_start=1
                     /product="liprin-alpha-2 isoform X8"
                     /protein_id="XP_047285733.1"
                     /db_xref="GeneID:8499"
                     /db_xref="HGNC:HGNC:9246"
                     /db_xref="MIM:603143"
                     /translation="MMCEVMPTINEDTPMSQRGSQSSGSDSDSHFEQLMVNMLDERDR
                     LLDTLRETQESLSLAQQRLQDVIYDRDSLQRQLNSALPQDIESLTGGLAGSKGADPPE
                     FAALTKELNACREQLLEKEEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQ
                     AQSPSGVSSEVEVLKALKSLFEHHKALDEKVRERLRVSLERVSALEEELAAANQEIVA
                     LREQNVHIQRKMASSEGSTESEHLEGMEPGQKVHEKRLSNGSIDSTDETSQIVELQEL
                     LEKQNYEMAQMKERLAALSSRVGEVEQEAETARKDLIKTEEMNTKYQRDIREAMAQKE
                     DMEERITTLEKRYLSAQRESTSIHDMNDKLENELANKEAILRQMEEKNRQLQERLELA
                     EQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEERMRHLEGQLEEKNQELQR
                     ARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEEKNVLIQESETFRKNL
                     EESLHDKERLAEEIEKLRSELDQLKMRTGSLIEPTIPRTHLDTSAELRYSVGSLVDSQ
                     SDYRTTKVIRRPRRGRMGVRRDEPKVKSLGDHEWNRTQQIGVLSSHPFESDTEMSDID
                     DDDRETIFSSMDLLSPSGHSDAQTLAMMLQEQLDAINKEIRLIQEEKESTELRAEEIE
                     NRVASVSLEGLNLARVHPGTSITASVTASSLASSSPPSGHSTPKLTPRSPAREMDRMG
                     VMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPPTPRALRMTHTLPSSYHNDARS
                     SLSVSLEPESLGLGSANSSQDSLHKAPKKKGIKSSIGRLFGKKEKARLGQLRGFMETE
                     AAAQESLGLGKLGTQAEKDRRLKKKHELLEEARRKGLPFAQWDGPTVVAWLELWLGMP
                     AWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPPT
                     SRTPSGNVWVTHEEMENLAAPAKTCPVFLQTLAYGDMNHEWIGNEWLPSLGLPQYRSY
                     FMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELERRREAS
                     QHEIKDVLVWSNDRVIRWIQAIGLREYANNILESGVHGSLIALDENFDYSSLALLLQI
                     PTQNTQARQILEREYNNLLALGTERRLDESDDKNFRRGSTWRRQFPPREVHGISMMPG
                     SSETLPAGFRLTTTSGQSRKMTTDVASSRLQRLDNSTVRTYSC"
ORIGIN      
        1 aggagtagca gccaccgcac gaggcaagtg aggagagaag atgctgtagc gtcctcaccg
       61 gctgccagca gggaaatggt ccaggagtgc tgggtgtgag cctcccttct cctcaagccg
      121 gagactgcgg ttgtcattga tcaattgaag aagcaaggac ccgaaatcac agacattagc
      181 aatgatgtgt gaagtgatgc ccacgattaa tgaggacacc ccaatgagcc aaagggggtc
      241 ccaaagcagt ggctcggact cagactccca ttttgagcag ctgatggtga atatgctaga
      301 tgaaagggat cgtcttctag acacccttcg ggagacccag gaaagcctct cacttgccca
      361 gcaaagactt caggatgtca tctatgaccg agactcactc cagagacagc tcaattcagc
      421 cctgccacag gatatcgaat ccctaacagg agggctggct ggttctaagg gggctgatcc
      481 accggaattt gctgcactga caaaagaatt aaatgcctgc agggaacaac ttctagaaaa
      541 ggaagaagaa atctctgaac ttaaagctga aagaaacaac acaagactat tactggagca
      601 tttggagtgc cttgtgtcac gacatgaaag atcactaaga atgacggtgg taaaacggca
      661 agcccagtct ccctcaggag tatccagtga agttgaagtt ctcaaggcac tgaaatcttt
      721 gtttgagcac cacaaggcct tggatgaaaa ggtaagggag cgactgaggg tttctttaga
      781 aagagtctct gcactggaag aagaactagc tgctgctaat caggagattg ttgccttgcg
      841 tgaacaaaat gttcatatac aaagaaaaat ggcatcaagc gagggatcca cagagtcaga
      901 acatcttgaa gggatggaac ctggacagaa agtccatgag aagcgtttgt ccaatggttc
      961 tatagactca accgatgaaa ctagtcaaat agttgaacta caagaattgc ttgaaaagca
     1021 aaactatgaa atggcccaga tgaaagaacg tttagcagcc ctttcttccc gagtgggaga
     1081 ggtggaacag gaagcagaga cagcaagaaa ggatctcatt aaaacagaag aaatgaacac
     1141 caagtatcaa agggacatta gggaggccat ggcacaaaag gaagatatgg aagaaagaat
     1201 tacaaccctt gaaaagcgtt acctcagtgc tcagagagaa tctacctcca tacatgacat
     1261 gaatgataaa ctagaaaatg agttagcaaa taaagaagct atcctgcggc agatggaaga
     1321 gaaaaacaga cagttacaag aacgtcttga gctagctgaa caaaagttgc agcagaccat
     1381 gagaaaggct gaaaccttgc ctgaagtaga ggctgaactg gctcagagaa ttgcagccct
     1441 aaccaaggct gaagagagac atggaaatat tgaagaacgt atgagacatt tagagggtca
     1501 acttgaagag aagaatcaag aacttcaaag agctaggcaa agagagaaaa tgaatgagga
     1561 gcataacaag agattatcgg atacggttga tagacttctg actgaatcca atgaacgcct
     1621 acaactacac ttaaaggaaa gaatggctgc tctagaagaa aagaatgttt taattcaaga
     1681 atcagaaact ttcagaaaga atcttgaaga atctttacat gataaggaaa gattagcaga
     1741 agaaattgaa aagctgagat ctgaacttga ccaattgaaa atgagaactg gctctttaat
     1801 tgaacccaca ataccaagaa ctcatctaga cacctcagct gagttgcggt actcagtggg
     1861 atccctagtg gacagccagt ctgattacag aacaactaaa gtaataagaa gaccaaggag
     1921 aggccgcatg ggtgtgcgaa gagatgagcc aaaggtgaaa tctcttgggg atcacgagtg
     1981 gaatagaact caacagattg gagtactaag cagccaccct tttgaaagtg acactgaaat
     2041 gtctgatatt gatgatgatg acagagaaac aatttttagc tcaatggatc ttctctctcc
     2101 aagtggtcat tccgatgccc agacgctagc catgatgctt caggaacaat tggatgccat
     2161 caacaaagaa atcaggctaa ttcaggaaga aaaagaatct acagagttgc gtgctgaaga
     2221 aattgaaaat agagtggcta gtgtgagcct cgaaggcctg aatttggcaa gggtccaccc
     2281 aggtacctcc attactgcct ctgttacagc ttcatcgctg gccagttcat ctccccccag
     2341 tggacactca actccaaagc tcacccctcg aagccctgcc agggaaatgg atcggatggg
     2401 agtcatgaca ctgccaagtg atctgaggaa acatcggaga aagattgcag ttgtggaaga
     2461 agatggtcga gaggacaaag caacaattaa atgtgaaact tctcctcctc ctacccctag
     2521 agccctcaga atgactcaca ctctcccttc ttcctaccac aatgatgctc gaagtagttt
     2581 atctgtctct cttgagccag aaagcctcgg gcttggtagt gccaacagca gccaagactc
     2641 tcttcacaaa gcccccaaga agaaaggaat caagtcttca ataggacgtt tgtttggtaa
     2701 aaaagaaaaa gctcgacttg ggcagctccg aggctttatg gagactgaag ctgcagctca
     2761 ggagtccctg gggttaggca aactcggaac tcaagctgag aaggatcgaa gactaaagaa
     2821 aaagcatgaa cttcttgaag aagctcggag aaagggatta ccttttgccc agtgggatgg
     2881 gccaactgtg gtcgcatggc tagagctttg gttgggaatg cctgcgtggt acgtggcagc
     2941 ctgccgagcc aacgtgaaga gtggtgccat catgtctgct ttatctgaca ctgagatcca
     3001 gagagaaatt ggaatcagca atccactgca tcgcttaaaa cttcgattag caatccagga
     3061 gatggtttcc ctaacaagtc cttcagctcc tccaacatct cgaactcctt caggcaacgt
     3121 ttgggtgact catgaagaaa tggaaaatct tgcagctcca gcaaaaacgt gtccggtttt
     3181 tctacagacc ctggcttatg gagatatgaa tcatgagtgg attggaaatg aatggcttcc
     3241 cagcttgggg ttacctcagt acagaagtta ctttatggaa tgcttggtag atgcaagaat
     3301 gttagatcac ctaacaaaaa aagatctccg tgtccattta aaaatggtgg atagtttcca
     3361 tcgaacaagt ttacaatatg gaattatgtg cttaaagagg ttgaattatg acagaaaaga
     3421 actagaaaga agacgggaag caagccaaca tgaaataaaa gacgtgttgg tgtggagcaa
     3481 tgaccgagtt attcgctgga tacaagcaat tggacttcga gaatatgcaa ataatatact
     3541 tgagagcggt gtgcatggct cacttatagc cctggatgaa aactttgact acagcagctt
     3601 agctttatta ttacagattc caacacagaa cacccaggca aggcagattc ttgaaagaga
     3661 atacaataac ctcttggccc tgggaactga aaggcgactg gatgaaagtg atgacaagaa
     3721 cttcagacgt ggatcaacct ggagaaggca gtttcctcct cgtgaagtac atggaatcag
     3781 catgatgcct gggtcctcag aaacattacc agctggattt aggttaacca caacctctgg
     3841 gcagtcaaga aaaatgacaa cagatgttgc ttcatcaaga ctgcagaggt tagacaactc
     3901 cactgttcgc acatactcat gttgaccagc cactcaaagg aggcagcact gacct
//
