LOCUS       XM_047427770            5318 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens PTPRF interacting protein alpha 1 (PPFIA1),
            transcript variant X20, mRNA.
ACCESSION   XM_047427770
VERSION     XM_047427770.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000011.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 36% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5318
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
     gene            1..5318
                     /gene="PPFIA1"
                     /gene_synonym="LIP.1; LIP1; LIPRIN"
                     /note="PTPRF interacting protein alpha 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 44 ESTs, 138 long SRA reads, 3 Proteins, and 74%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 18 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:8500"
                     /db_xref="HGNC:HGNC:9245"
                     /db_xref="MIM:611054"
     CDS             226..3912
                     /gene="PPFIA1"
                     /gene_synonym="LIP.1; LIP1; LIPRIN"
                     /codon_start=1
                     /product="liprin-alpha-1 isoform X18"
                     /protein_id="XP_047283726.1"
                     /db_xref="GeneID:8500"
                     /db_xref="HGNC:HGNC:9245"
                     /db_xref="MIM:611054"
                     /translation="MMCEVMPTISEAEGPPGGGGGHGSGSPSQPDADSHFEQLMVSML
                     EERDRLLDTLRETQETLALTQGKLHEVGHERDSLQRQLNTALPQEFAALTKELNVCRE
                     QLLEREEEIAELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEV
                     LKALKSLFEHHKALDEKVRERLRVALERCSLLEEELGATHKELMILKEQNNQKKTLTD
                     GVLDINHEQENTPSTSGKRSSDGSLSHEEDLAKVIELQEIISKQSREQSQMKERLASL
                     SSHVTELEEDLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQR
                     EATSVHDLNDKLENEIANKDSMHRQTEDKNRQLQERLELAEQKLQQTLRKAETLPEVE
                     AELAQRVAALSKSDLLSSGSSAAKEAKLLELTSKLRKAEERHGNIEERLRQMEAQLEE
                     KNQELQRARQREKMNEEHNKRLSDTVDKLLSESNERLQLHLKERMAALEDKNSLLREV
                     ESAKKQLEETQHDKDQLVLNIEALRAELDHMRLRGASLHHGRPHLGSVPDFRFPMADG
                     HTDSYSTSAVLRRPQKGRLAALRDEPSKVQTLNEQDWERAQQASVLANVAQAFESDAD
                     VSDGEDDRDTLLSSVDLLSPSGQADAHTLAMMLQEQLDAINKEIRLIQEEKENTEQRA
                     EEIESRVGSGSLDNLGRFRSMSSIPPYPASSLASSSPPGSGRSTPRRIPHSPAREVDR
                     LGVMTLLPPSREEVRDDKTTIKCETSPPSSPRALRLDRLHKGALHTVSHEDIRDIRNS
                     TGSQDGPVSNPSSSNSSQDSLHKAPKKKGIKSSIGRLFGKKEKGRPGQTGKEALGQAG
                     VSETDNSSQDALGLSKLGGQAEKNRKLQKKHELLEEARRQGLPFAQWDGPTVVVWLEL
                     WVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEIMSLTSP
                     SAPPTSRTQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRG
                     QLKMVDSFHRNSFQCGIMCLRRLNYDRKELERKREESQSEIKDVLVWSNDRVIRWILS
                     IGLKEYANNLIESGVHGALLALDETFDFSALALLLQIPTQNTQARAVLEREFNNLLVM
                     GTDRRFDEDDDKSFRRAPSWRKKFRPKDIRGLAAGSAETLPANFRVTSSMSSPSMQPK
                     KMQMDGNVSGTQRLDSATVRTYSC"
ORIGIN      
        1 agacgccggc gccgcgcagc cgggcccgct cctcctccgc tccgccagtg tccggccgcg
       61 ggccggcctt agtgactggg gcggcgggcc ccggggccgc ggcgtggggc gggcaggcgg
      121 acgccggccg cgggctgctt tcgtcggctc ccaagctctc ccggagcgag cagccgcccg
      181 cgagccgccg cggagcctcc tcgcccgctc ccgccggcga gcaagatgat gtgcgaggtg
      241 atgccgacca tcagcgaagc agaaggcccc cctggaggag gtggaggcca tggttccggc
      301 tccccttcac agccagatgc agattcacat tttgaacagt tgatggtctc catgctagaa
      361 gaaagggacc gccttcttga tacactgaga gagactcaag aaacgctggc cttaacccag
      421 gggaagttac acgaggttgg tcatgaaaga gattccttgc agagacagct caacacggca
      481 cttccacagg agttcgcagc acttactaaa gaactcaatg tatgcaggga acagctcctt
      541 gaaagggaag aagaaattgc tgaactgaaa gcagaaagga ataacaccag gctgctgtta
      601 gagcatttgg aatgccttgt ctccaggcat gagcggtctc ttaggatgac cgtggtgaag
      661 agacaagcgc agtctccagc aggcgtgtcc agcgaagtgg aagtgctgaa agcactgaag
      721 tccttatttg aacaccacaa agctctggat gaaaaggtga gagagcgatt acgagtagca
      781 cttgaaagat gtagtttgtt agaagaggaa ttaggtgcca cacacaaaga gctaatgatt
      841 cttaaagaac agaataatca gaaaaaaact ctaacagatg gagtgctgga cataaaccat
      901 gaacaagaaa atacaccaag cacgagtgga aagagatctt ctgatggttc tttaagccac
      961 gaggaagacc ttgctaaagt aattgagctc caagaaatca taagtaagca gtcaagggaa
     1021 cagagccaaa tgaaagaacg cctggcttcc ctttccagtc atgtgacaga actggaagag
     1081 gatctggaca cggctagaaa agatctcatc aaatctgaag aaatgaacac aaaattgcaa
     1141 cgagatgtcc gtgaagccat ggcccaaaag gaagatatgg aagagagaat cactactctt
     1201 gaaaaacgct acctcgctgc acagcgtgaa gccacatctg tgcatgacct caatgataaa
     1261 cttgaaaatg aaattgcaaa taaagattct atgcatcgac agactgaaga taaaaaccgc
     1321 cagttacagg agcgcttgga attggcagag caaaagctgc aacagacact gaggaaggca
     1381 gagacgctcc cggaggtgga ggcggagctg gcccagaggg tggcagcgct ttccaagtct
     1441 gaccttttgt cttctgggag ctctgctgct aaggaagcta aactgttgga acttacttcc
     1501 aagcttagga aggctgaaga gagacacggc aacattgaag aaaggttacg acagatggaa
     1561 gcacagttgg aggagaagaa tcaagaactg cagcgggcaa ggcaaagaga aaaaatgaac
     1621 gaagaacata ataaacgttt atcagacact gttgacaagc tgctttcaga atctaatgag
     1681 aggcttcaac ttcatcttaa agagagaatg gctgctttgg aagataagaa ctctctttta
     1741 agagaagttg aaagtgcaaa aaagcagtta gaagaaacac aacacgataa ggatcagctt
     1801 gtcctaaaca ttgaagcact gagggctgaa ctagaccaca tgagactaag aggtgcttca
     1861 cttcatcatg gccgacccca cttgggcagt gtcccagatt tcaggttccc catggcagac
     1921 ggccacacag actcctacag caccagtgca gtgctgcggc gcccacagaa aggccggctg
     1981 gcagccctgc gagatgagcc ttccaaggta caaactctta atgagcagga ttgggaacgt
     2041 gcccagcaag ctagtgtctt ggcaaatgta gcacaagcat tcgagagtga tgctgacgtg
     2101 tctgatggtg aagatgacag ggacactctc ctcagctcag ttgacctgct atcgcccagc
     2161 gggcaggccg acgcgcacac actagccatg atgcttcagg agcagctgga cgccatcaac
     2221 aaagagatca ggttgattca ggaagaaaaa gaaaatacag agcagcgggc agaggagatt
     2281 gaaagtcgag ttggcagtgg aagtctagac aatcttggtc gttttagatc aatgagctcc
     2341 attcccccct accctgcttc ctcgcttgct agctcctccc ctccgggcag tgggcgctcc
     2401 accccacgaa ggatccctca cagcccagct cgggaagtgg acagactggg cgtcatgacc
     2461 cttttgccac cttccagaga agaggtacga gatgacaaga caaccataaa gtgtgaaacc
     2521 tccccgcctt cctccccgag agcccttcgg ttagaccggc tgcacaaagg ggcgctgcac
     2581 accgtcagcc acgaggacat cagggacata aggaactcca caggctccca ggatggtccc
     2641 gtgagcaacc ccagcagtag caacagtagc caggactcgc tccacaaagc cccaaagaag
     2701 aaaggcatta agtcctccat tggccgcttg tttggcaaga aagaaaaggg ccgacctgga
     2761 caaactggca aagaagcatt aggacaagct ggtgtttccg agacggataa ctcatctcag
     2821 gatgccttgg gacttagcaa attgggggga caggctgaaa aaaatcgtaa acttcaaaaa
     2881 aagcatgaat tgctggagga agcccggaga caaggtttac cttttgccca atgggacggg
     2941 ccaacggttg tggtctggct agagctctgg gttgggatgc cagcctggta tgtggctgcc
     3001 tgccgagcaa acgtgaaaag cggggccatc atgtcggccc tgtccgacac agagatccag
     3061 cgtgagattg gcatcagcaa ccccctgcac aggctgaagc tgaggctggc catccaggag
     3121 atcatgtcgc tgaccagccc gtctgccccg cccacatcta gaacgcagac actcgcctat
     3181 ggggacatga accacgagtg gatcggcaac gagtggctcc ccagcctggg cctcccccag
     3241 taccgcagct acttcatgga gtgccttgta gacgccagga tgctggacca cttgaccaag
     3301 aaagaccttc gagggcagct gaaaatggtc gacagttttc acagaaacag tttccagtgt
     3361 ggaattatgt gcctgagaag gttaaattat gaccggaaag aactggaaag aaaaagagaa
     3421 gaaagtcaga gtgaaataaa agacgtgctt gtttggagca atgatcgagt gattcgctgg
     3481 atcctgtcaa ttggccttaa agaatatgca aacaatctta tagagagtgg tgttcacgga
     3541 gcacttctgg ccttagatga aaccttcgac ttcagtgcac tggcactgct gttacagatc
     3601 ccgacgcaga acacacaggc tcgtgctgtc ttggaaagag aatttaacaa ccttttggtc
     3661 atggggactg atagaaggtt tgatgaagat gatgataaaa gctttaggag agcaccttca
     3721 tggagaaaaa agtttagacc aaaggacatt cgtggcttag ctgctgggtc agcagagact
     3781 ctccctgcaa acttccgggt gacttcttct atgtcttccc cctctatgca gccaaagaag
     3841 atgcagatgg acggcaatgt atcaggaaca cagaggttgg attctgctac agtcaggact
     3901 tactcctgct aaagtctcct gttgtttacc cacactactt ctacagatga ttatgcagca
     3961 tttgaatcca acaaagacta cattttggaa tccagtggaa tctttaatct tgttaatact
     4021 tgttatatgg accctaagat attttattac agagttttta attagtgaaa aattcatgaa
     4081 taccatagag aaaatatttt agaatttaat gtttcttata tttatgtaaa cttatgactc
     4141 ttcatttata tagttactta ctttttcatg tatatccagg ctataaatat cctttcaaat
     4201 catgttctta tacctaattt tagtctttca aatgaatgta ctgtaatgct tgtatgtata
     4261 aatcctatga atagagggct tttgtaaatt atgcatttat tgtaattatc attaattttt
     4321 taatgataaa ccatgacaaa ggattttacg tttataaaat tatgacagaa gccatgtgca
     4381 ttatccttta cggacgcagc ctagctctac agcaatcatc ctgaaataag catacctaat
     4441 ttcaagcaat tgttgtattt tcatgactga ccttaactgt actttttcta gcaagagatg
     4501 ctttattctg cagcatgaac agatttaaaa tggctggtgt taaatatcag ctcctaataa
     4561 gatgtggact gaaaacacta tcacaacact atgagaagcc cctagcactg gttaacgctt
     4621 tcctagccta gtctctggat ttggggagct tgtcttcagt ggctgagact gtgagctggg
     4681 agcagttctc tcagctggag agactcggga tggggtaacc tggggaccag tctagcccct
     4741 gcaccctctt ccctgcctct gctccttggg agcgggtgga gagacaccca tgtggctccc
     4801 cttagggcca gcaccaagca ccacgctctc atcctgcaag tcggcgcaca cagtggatga
     4861 aggcaggaga cccagaaagc agtgcagtgc agctctaata aaggccttat ttttcttatg
     4921 taaatcatct ttttacattt gtttgtaaac atgtttaaag aacgaaccta gtgggacatt
     4981 tttagacttt gatgctctag ccattttgga ttgtgtaagt tgcagatgtg gcttttactt
     5041 tttaaatggc atattaacaa gccagcaaag tgtgtcagac catggcgtgg tatttattgt
     5101 gcagcagatc cagagacaga ggcagcctgt cttttcagtt ggtttctgct tttaatttac
     5161 ttgtacaatt cattgttact gttctgtttt tctattaatc ttttgtcaac ttcctgatta
     5221 tgtaacaaag tatgtacagt ctacttttga actattttta tcacagtatt atttattgct
     5281 ttctttcaat aaagtactga agcattttcc actgccaa
//
