LOCUS       XM_047427769            5330 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens PTPRF interacting protein alpha 1 (PPFIA1),
            transcript variant X19, mRNA.
ACCESSION   XM_047427769
VERSION     XM_047427769.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000011.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 36% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5330
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
     gene            1..5330
                     /gene="PPFIA1"
                     /gene_synonym="LIP.1; LIP1; LIPRIN"
                     /note="PTPRF interacting protein alpha 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 55 ESTs, 293 long SRA reads, 8 Proteins, and 74%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 12 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:8500"
                     /db_xref="HGNC:HGNC:9245"
                     /db_xref="MIM:611054"
     CDS             226..3924
                     /gene="PPFIA1"
                     /gene_synonym="LIP.1; LIP1; LIPRIN"
                     /codon_start=1
                     /product="liprin-alpha-1 isoform X17"
                     /protein_id="XP_047283725.1"
                     /db_xref="GeneID:8500"
                     /db_xref="HGNC:HGNC:9245"
                     /db_xref="MIM:611054"
                     /translation="MMCEVMPTISEAEGPPGGGGGHGSGSPSQPDADSHFEQLMVSML
                     EERDRLLDTLRETQETLALTQGKLHEVGHERDSLQRQLNTALPQEFAALTKELNVCRE
                     QLLEREEEIAELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEV
                     LKALKSLFEHHKALDEKVRERLRVALERCSLLEEELGATHKELMILKEQNNQKKTLTD
                     GVLDINHEQENTPSTSGKRSSDGSLSHEEDLAKVIELQEIISKQSREQSQMKERLASL
                     SSHVTELEEDLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQR
                     EATSVHDLNDKLENEIANKDSMHRQTEDKNRQLQERLELAEQKLQQTLRKAETLPEVE
                     AELAQRVAALSKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSDT
                     VDKLLSESNERLQLHLKERMAALEDKNSLLREVESAKKQLEETQHDKDQLVLNIEALR
                     AELDHMRLRGASLHHGRPHLGSVPDFRFPMADGHTDSYSTSAVLRRPQKGRLAALRDE
                     PSKVQTLNEQDWERAQQASVLANVAQAFESDADVSDGEDDRDTLLSSVDLLSPSGQAD
                     AHTLAMMLQEQLDAINKEIRLIQEEKENTEQRAEEIESRVGSGSLDNLGRFRSMSSIP
                     PYPASSLASSSPPGSGRSTPRRIPHSPAREVDRLGVMTLLPPSREEVRDDKTTIKCET
                     SPPSSPRALRLDRLHKGALHTVSHEDIRDIRNSTGSQDGPVSNPSSSNSSQDSLHKAP
                     KKKGIKSSIGRLFGKKEKGRPGQTGKEALGQAGVSETDNSSQDALGLSKLGGQAEKNR
                     KLQKKHELLEEARRQGLPFAQWDGPTVVVWLELWVGMPAWYVAACRANVKSGAIMSAL
                     SDTEIQREIGISNPLHRLKLRLAIQEIMSLTSPSAPPTSRTTTGNVWLTHEEMETLAA
                     TPQTEDEEGSWAQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKK
                     DLRGQLKMVDSFHRNSFQCGIMCLRRLNYDRKELERKREESQSEIKDVLVWSNDRVIR
                     WILSIGLKEYANNLIESGVHGALLALDETFDFSALALLLQIPTQNTQARAVLEREFNN
                     LLVMGTDRRFDEDDDKSFRRAPSWRKKFRPKDIRGLAAGSAETLPANFRVTSSMSSPS
                     MQPKKMQMDGNVSGTQRLDSATVRTYSC"
ORIGIN      
        1 agacgccggc gccgcgcagc cgggcccgct cctcctccgc tccgccagtg tccggccgcg
       61 ggccggcctt agtgactggg gcggcgggcc ccggggccgc ggcgtggggc gggcaggcgg
      121 acgccggccg cgggctgctt tcgtcggctc ccaagctctc ccggagcgag cagccgcccg
      181 cgagccgccg cggagcctcc tcgcccgctc ccgccggcga gcaagatgat gtgcgaggtg
      241 atgccgacca tcagcgaagc agaaggcccc cctggaggag gtggaggcca tggttccggc
      301 tccccttcac agccagatgc agattcacat tttgaacagt tgatggtctc catgctagaa
      361 gaaagggacc gccttcttga tacactgaga gagactcaag aaacgctggc cttaacccag
      421 gggaagttac acgaggttgg tcatgaaaga gattccttgc agagacagct caacacggca
      481 cttccacagg agttcgcagc acttactaaa gaactcaatg tatgcaggga acagctcctt
      541 gaaagggaag aagaaattgc tgaactgaaa gcagaaagga ataacaccag gctgctgtta
      601 gagcatttgg aatgccttgt ctccaggcat gagcggtctc ttaggatgac cgtggtgaag
      661 agacaagcgc agtctccagc aggcgtgtcc agcgaagtgg aagtgctgaa agcactgaag
      721 tccttatttg aacaccacaa agctctggat gaaaaggtga gagagcgatt acgagtagca
      781 cttgaaagat gtagtttgtt agaagaggaa ttaggtgcca cacacaaaga gctaatgatt
      841 cttaaagaac agaataatca gaaaaaaact ctaacagatg gagtgctgga cataaaccat
      901 gaacaagaaa atacaccaag cacgagtgga aagagatctt ctgatggttc tttaagccac
      961 gaggaagacc ttgctaaagt aattgagctc caagaaatca taagtaagca gtcaagggaa
     1021 cagagccaaa tgaaagaacg cctggcttcc ctttccagtc atgtgacaga actggaagag
     1081 gatctggaca cggctagaaa agatctcatc aaatctgaag aaatgaacac aaaattgcaa
     1141 cgagatgtcc gtgaagccat ggcccaaaag gaagatatgg aagagagaat cactactctt
     1201 gaaaaacgct acctcgctgc acagcgtgaa gccacatctg tgcatgacct caatgataaa
     1261 cttgaaaatg aaattgcaaa taaagattct atgcatcgac agactgaaga taaaaaccgc
     1321 cagttacagg agcgcttgga attggcagag caaaagctgc aacagacact gaggaaggca
     1381 gagacgctcc cggaggtgga ggcggagctg gcccagaggg tggcagcgct ttccaaggct
     1441 gaagagagac acggcaacat tgaagaaagg ttacgacaga tggaagcaca gttggaggag
     1501 aagaatcaag aactgcagcg ggcaaggcaa agagaaaaaa tgaacgaaga acataataaa
     1561 cgtttatcag acactgttga caagctgctt tcagaatcta atgagaggct tcaacttcat
     1621 cttaaagaga gaatggctgc tttggaagat aagaactctc ttttaagaga agttgaaagt
     1681 gcaaaaaagc agttagaaga aacacaacac gataaggatc agcttgtcct aaacattgaa
     1741 gcactgaggg ctgaactaga ccacatgaga ctaagaggtg cttcacttca tcatggccga
     1801 ccccacttgg gcagtgtccc agatttcagg ttccccatgg cagacggcca cacagactcc
     1861 tacagcacca gtgcagtgct gcggcgccca cagaaaggcc ggctggcagc cctgcgagat
     1921 gagccttcca aggtacaaac tcttaatgag caggattggg aacgtgccca gcaagctagt
     1981 gtcttggcaa atgtagcaca agcattcgag agtgatgctg acgtgtctga tggtgaagat
     2041 gacagggaca ctctcctcag ctcagttgac ctgctatcgc ccagcgggca ggccgacgcg
     2101 cacacactag ccatgatgct tcaggagcag ctggacgcca tcaacaaaga gatcaggttg
     2161 attcaggaag aaaaagaaaa tacagagcag cgggcagagg agattgaaag tcgagttggc
     2221 agtggaagtc tagacaatct tggtcgtttt agatcaatga gctccattcc cccctaccct
     2281 gcttcctcgc ttgctagctc ctcccctccg ggcagtgggc gctccacccc acgaaggatc
     2341 cctcacagcc cagctcggga agtggacaga ctgggcgtca tgaccctttt gccaccttcc
     2401 agagaagagg tacgagatga caagacaacc ataaagtgtg aaacctcccc gccttcctcc
     2461 ccgagagccc ttcggttaga ccggctgcac aaaggggcgc tgcacaccgt cagccacgag
     2521 gacatcaggg acataaggaa ctccacaggc tcccaggatg gtcccgtgag caaccccagc
     2581 agtagcaaca gtagccagga ctcgctccac aaagccccaa agaagaaagg cattaagtcc
     2641 tccattggcc gcttgtttgg caagaaagaa aagggccgac ctggacaaac tggcaaagaa
     2701 gcattaggac aagctggtgt ttccgagacg gataactcat ctcaggatgc cttgggactt
     2761 agcaaattgg ggggacaggc tgaaaaaaat cgtaaacttc aaaaaaagca tgaattgctg
     2821 gaggaagccc ggagacaagg tttacctttt gcccaatggg acgggccaac ggttgtggtc
     2881 tggctagagc tctgggttgg gatgccagcc tggtatgtgg ctgcctgccg agcaaacgtg
     2941 aaaagcgggg ccatcatgtc ggccctgtcc gacacagaga tccagcgtga gattggcatc
     3001 agcaaccccc tgcacaggct gaagctgagg ctggccatcc aggagatcat gtcgctgacc
     3061 agcccgtctg ccccgcccac atctagaacg accacaggaa atgtctggtt aacacacgaa
     3121 gagatggaaa cgctcgcagc cacgccgcaa acggaagatg aggagggaag ctgggctcag
     3181 acactcgcct atggggacat gaaccacgag tggatcggca acgagtggct ccccagcctg
     3241 ggcctccccc agtaccgcag ctacttcatg gagtgccttg tagacgccag gatgctggac
     3301 cacttgacca agaaagacct tcgagggcag ctgaaaatgg tcgacagttt tcacagaaac
     3361 agtttccagt gtggaattat gtgcctgaga aggttaaatt atgaccggaa agaactggaa
     3421 agaaaaagag aagaaagtca gagtgaaata aaagacgtgc ttgtttggag caatgatcga
     3481 gtgattcgct ggatcctgtc aattggcctt aaagaatatg caaacaatct tatagagagt
     3541 ggtgttcacg gagcacttct ggccttagat gaaaccttcg acttcagtgc actggcactg
     3601 ctgttacaga tcccgacgca gaacacacag gctcgtgctg tcttggaaag agaatttaac
     3661 aaccttttgg tcatggggac tgatagaagg tttgatgaag atgatgataa aagctttagg
     3721 agagcacctt catggagaaa aaagtttaga ccaaaggaca ttcgtggctt agctgctggg
     3781 tcagcagaga ctctccctgc aaacttccgg gtgacttctt ctatgtcttc cccctctatg
     3841 cagccaaaga agatgcagat ggacggcaat gtatcaggaa cacagaggtt ggattctgct
     3901 acagtcagga cttactcctg ctaaagtctc ctgttgttta cccacactac ttctacagat
     3961 gattatgcag catttgaatc caacaaagac tacattttgg aatccagtgg aatctttaat
     4021 cttgttaata cttgttatat ggaccctaag atattttatt acagagtttt taattagtga
     4081 aaaattcatg aataccatag agaaaatatt ttagaattta atgtttctta tatttatgta
     4141 aacttatgac tcttcattta tatagttact tactttttca tgtatatcca ggctataaat
     4201 atcctttcaa atcatgttct tatacctaat tttagtcttt caaatgaatg tactgtaatg
     4261 cttgtatgta taaatcctat gaatagaggg cttttgtaaa ttatgcattt attgtaatta
     4321 tcattaattt tttaatgata aaccatgaca aaggatttta cgtttataaa attatgacag
     4381 aagccatgtg cattatcctt tacggacgca gcctagctct acagcaatca tcctgaaata
     4441 agcataccta atttcaagca attgttgtat tttcatgact gaccttaact gtactttttc
     4501 tagcaagaga tgctttattc tgcagcatga acagatttaa aatggctggt gttaaatatc
     4561 agctcctaat aagatgtgga ctgaaaacac tatcacaaca ctatgagaag cccctagcac
     4621 tggttaacgc tttcctagcc tagtctctgg atttggggag cttgtcttca gtggctgaga
     4681 ctgtgagctg ggagcagttc tctcagctgg agagactcgg gatggggtaa cctggggacc
     4741 agtctagccc ctgcaccctc ttccctgcct ctgctccttg ggagcgggtg gagagacacc
     4801 catgtggctc cccttagggc cagcaccaag caccacgctc tcatcctgca agtcggcgca
     4861 cacagtggat gaaggcagga gacccagaaa gcagtgcagt gcagctctaa taaaggcctt
     4921 atttttctta tgtaaatcat ctttttacat ttgtttgtaa acatgtttaa agaacgaacc
     4981 tagtgggaca tttttagact ttgatgctct agccattttg gattgtgtaa gttgcagatg
     5041 tggcttttac tttttaaatg gcatattaac aagccagcaa agtgtgtcag accatggcgt
     5101 ggtatttatt gtgcagcaga tccagagaca gaggcagcct gtcttttcag ttggtttctg
     5161 cttttaattt acttgtacaa ttcattgtta ctgttctgtt tttctattaa tcttttgtca
     5221 acttcctgat tatgtaacaa agtatgtaca gtctactttt gaactatttt tatcacagta
     5281 ttatttattg ctttctttca ataaagtact gaagcatttt ccactgccaa
//
