LOCUS       NM_001354980            3294 bp    mRNA    linear   PRI 27-JUL-2024
DEFINITION  Homo sapiens PNMA family member 6F (PNMA6F), mRNA.
ACCESSION   NM_001354980 XM_016999944 XM_017030024
VERSION     NM_001354980.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Li,Y., Wang,X., Cho,J.H., Shaw,T.I., Wu,Z., Bai,B., Wang,H.,
            Zhou,S., Beach,T.G., Wu,G., Zhang,J. and Peng,J.
  TITLE     JUMPg: An Integrative Proteogenomics Pipeline Identifying
            Unannotated Proteins in Human Brain and Cancer Cells
  JOURNAL   J Proteome Res 15 (7), 2309-2320 (2016)
   PUBMED   27225868
REFERENCE   2  (bases 1 to 3294)
  AUTHORS   Mallon,A.M., Platzer,M., Bate,R., Gloeckner,G., Botcherby,M.R.,
            Nordsiek,G., Strivens,M.A., Kioschis,P., Dangel,A., Cunningham,D.,
            Straw,R.N., Weston,P., Gilbert,M., Fernando,S., Goodall,K.,
            Hunter,G., Greystrong,J.S., Clarke,D., Kimberley,C., Goerdes,M.,
            Blechschmidt,K., Rump,A., Hinzmann,B., Mundy,C.R., Miller,W.,
            Poustka,A., Herman,G.E., Rhodes,M., Denny,P., Rosenthal,A. and
            Brown,S.D.
  TITLE     Comparative genome sequence analysis of the Bpa/Str region in mouse
            and Man
  JOURNAL   Genome Res 10 (6), 758-775 (2000)
   PUBMED   10854409
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC152008.1 and AC152009.1.
            
            On May 17, 2019 this sequence version replaced NM_001354980.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1803617.267406.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2144835, SAMEA2145544
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000436629.3/ ENSP00000488302.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-216               AC152008.1         8150-8365           c
            217-1691            AC152008.1         5881-7355           c
            1692-3294           AC152009.1         41405-43007         c
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
                     /map="Xq28"
     gene            1..3294
                     /gene="PNMA6F"
                     /gene_synonym="PNMA6BL"
                     /note="PNMA family member 6F"
                     /db_xref="GeneID:105373377"
                     /db_xref="HGNC:HGNC:53119"
     exon            1..216
                     /gene="PNMA6F"
                     /gene_synonym="PNMA6BL"
                     /inference="alignment:Splign:2.1.0"
     exon            217..3294
                     /gene="PNMA6F"
                     /gene_synonym="PNMA6BL"
                     /inference="alignment:Splign:2.1.0"
     CDS             300..2036
                     /gene="PNMA6F"
                     /gene_synonym="PNMA6BL"
                     /note="paraneoplastic antigen-like protein 6B;
                     paraneoplastic Ma antigen family member 6F"
                     /codon_start=1
                     /product="paraneoplastic antigen Ma6F"
                     /protein_id="NP_001341909.1"
                     /db_xref="CCDS:CCDS87792.1"
                     /db_xref="GeneID:105373377"
                     /db_xref="HGNC:HGNC:53119"
                     /translation="MLQDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGR
                     YRVLIKVFRKELGARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIP
                     SFPAQPQGQAVARGAGEAGAAGEAGSVGEAGGVNEERSAGEDEAGGIGEAGGVGEAGA
                     AGEAGAAGEAGAAGEAGGAGEAGGAGEAGGAGEEGGTGEEGGAGEAGGAGEEGGEDEA
                     GAAGEAVGAGVVEAWTQSWRQTLRPLVKTMAYRELRPFSGREQPGCVEESFESWLEDA
                     KDMLQLWCHASERERRRRLLDSLDGLALDIVSGLLEEDPDFSAQDCLTALGQVFRSRD
                     TWMTSRMKFLTCTQGPQEGLFAFVVRLEGLLQKAVEKGAVHPAMANHLRLRQVLSRAR
                     PSEALQDTLRRMQLERRPPDFLRLLRLIRDMEAWAASLARSQQGVAWAAAPVESEDPA
                     AAQASPAQGDASEADPGAEDADEAASTTKEAARVAPATGEDENAPAGLEGLGQGRSPD
                     APGGLPARMGSAVDMAPGGPSWEPEGLVQVGGQEAEEPPQEGLKPILEESENEDEDGA
                     GEAGKPKSPPGK"
     regulatory      3272..3277
                     /regulatory_class="polyA_signal_sequence"
                     /gene="PNMA6F"
                     /gene_synonym="PNMA6BL"
                     /note="hexamer: AATAAA"
     polyA_site      3294
                     /gene="PNMA6F"
                     /gene_synonym="PNMA6BL"
                     /note="major polyA site"
ORIGIN      
        1 ctcatctacc tggggcttct gggagaagcg ggaagccctg tagtcttagc acagcgggct
       61 ttggagaccc ctgcgctgcg cagcgcggcc gcgtgactga ggcgagatct tccaccctcc
      121 tgctccaggg cctctaggtg gcctccagag tgggctccac agcttgaagg cggcgttttt
      181 ccgcgggtgg tcgcagcgtc cgcagagtcg gagaaagctg cgtcagagac tgcaacagtc
      241 agcacacatt cctgtctgat caggctccct ccctcaagtc ctctgcgata gctctggcga
      301 tgcttcagga ctggtgcagg aggatgggtg tgaacgcaga gcgctctctg ctcatcctgg
      361 atatccctga cgactgcgag gaacatgagt tccaggaggc cgtgcgggct gccctgtcgc
      421 ccctgggcag gtaccgagtg ctcatcaagg tcttcagaaa ggagctcggg gccagggcag
      481 ccttggtgga attcgctgag ggtttaaacc aaagcttgat tccccgccaa atagcaggca
      541 aagggggacc ctggaaagtg atctccctgc cccaggccct tgatgctgag tttcaggata
      601 tacccagttt ccctgcacag ccccaggggc aagcagtggc cagaggtgca ggtgaagcag
      661 gagctgcagg tgaggcagga tctgtaggtg aggcaggagg tgtgaatgag gaaagatctg
      721 caggtgaaga tgaggcagga ggtataggtg aggcaggagg tgtaggtgag gcaggagcag
      781 caggtgaggc aggagcagca ggtgaggcag gagcagcagg tgaggcagga ggtgcaggtg
      841 aggcaggagg tgcaggtgag gcaggaggtg caggtgagga aggaggtaca ggtgaggaag
      901 gaggtgcagg tgaggcagga ggcgcaggtg aggaaggagg tgaagatgag gcaggagctg
      961 caggtgaggc agtaggtgca ggtgtggtgg aggcctggac ccagtcatgg cgccagaccc
     1021 tgcggcctct ggtgaaaact atggcctacc gggaactgag acccttttcc gggagggagc
     1081 agccaggctg cgtggaagag tcctttgaga gctggttgga ggacgccaag gatatgctgc
     1141 agctgtggtg ccacgcgtcg gaaagggaga gaaggaggcg gctgctggac agcttggatg
     1201 gcctggccct ggatatcgtg agcggcctcc tggaggaaga tccagacttc tctgcgcagg
     1261 actgcctgac ggcgctgggg caggtgttta ggagccggga tacatggatg acctcgcgga
     1321 tgaagttcct gacctgcacg caggggcccc aggaggggct gtttgccttc gtggtgcgcc
     1381 tggaaggcct gctgcagaag gccgtggaga agggggcggt ccacccagcc atggccaacc
     1441 acctgcgact gcggcaggtg ctgtctcggg cccgccccag cgaggcactc caggataccc
     1501 tgaggaggat gcagctggag aggaggccac ctgacttcct gaggctgctg cggctcatcc
     1561 gggacatgga ggcgtgggca gcctccctag caaggagcca gcagggtgtg gcctgggcag
     1621 cggccccagt ggagagtgaa gacccagctg ctgcccaggc ctccccggcc cagggggacg
     1681 ccagcgaggc tgatcccgga gcagaagatg ctgatgaggc tgcttccacc accaaagagg
     1741 ccgccagggt tgcccctgcc actggggaag atgaaaatgc ccctgcaggc cttgaaggcc
     1801 taggtcaggg aaggtccccc gacgcccctg ggggcctccc agccaggatg ggcagtgcag
     1861 tcgacatggc cccaggaggt cccagctggg agccagaggg ccttgtccag gttggaggcc
     1921 aggaggctga ggagcctccc caggaggggc tcaagcccat cttagaggag tcagaaaacg
     1981 aggatgagga tggggctggg gaggcgggca agcccaagtc ccccccgggc aaataggctc
     2041 tgagggccct gagggctcct ctcctctcag gcagcagcac cctggaggca gacagaggcc
     2101 aggccagggc cggtccctca ccccatgttg ggagctgtgc ctcccacctc ccctaatggg
     2161 tcctggccac caccaccagc ccttcccagt gactcagatg accacgtttg ataccaaatg
     2221 gggagctggc ctggagggag ctctgagcgg ccagcctgaa gatgtctgcc ccccacccct
     2281 tgtcctgtgt tgggagagat gggggaaaga ggccctctca agggtgacag ctgcctacat
     2341 gtcccaagag gtggccccca cttgccatcc ctggggcaga ctgccccccg ttccgggaag
     2401 cccaccctca cctctgtagg ccccatagtg acccacgcgt ccgaacagca gacgcccact
     2461 cacccaccgc tagccattgt tcctacacaa agttgtatgc tgtgcgccca tcggtgcggc
     2521 tgcctctggg cctggggcac atgctgtgag cttcctgcta gcccaggctc tgctagctgc
     2581 tacctgtccc ttgtcgtgag caccacctct gctttcctgg tgtagatcta ggccaggggc
     2641 tgcttgttct cgtggagctg tgtgtgttct tctctgagca gctcctcccc ggaggccccc
     2701 agcacagtcc tgggagatgg tggaaggagg cgccagggca cgatggacgc tcatcctgtg
     2761 actgctatgg tgagcatgac cacgatggtg cccgtgacca tgatggtgac catgactgtg
     2821 tgaggaagaa ccggacctgg gacagagcag agctgccctg cctgaggctc cccggggagc
     2881 tttgtgcttt ggtgttctat tcctgttgtt acttgtgact cagtttcctt gacttggggg
     2941 ggtgttccct gctgtgtttt cagtgtcctg tgagggctat agggcagggc cctgccccag
     3001 cggatgggct cgggaggggg ctccctgaag ccagtggaca ctgccagagt ccaccatcct
     3061 ggcaagaggc ggaccctggg gccctcagga aggagggagt tggcagcggg ggctgcagca
     3121 ggagtaggag cagatgaggc gtcttgccag gaaccccagg aggagggggc ccgggacctg
     3181 tgtgggacct gtgtcctgtg gtggcaattt gcagtttctc tctgtgttgt gattcccttc
     3241 tcttcaatgg tttcagtaca tgtttctctt caataaactt cattcagtgt tcca
//
