LOCUS       XM_047448319            3508 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens procollagen-lysine,2-oxoglutarate
            5-dioxygenase 2 (PLOD2), transcript variant X2, mRNA.
ACCESSION   XM_047448319
VERSION     XM_047448319.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000003.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
     gene            1..3508
                     /gene="PLOD2"
                     /gene_synonym="BRKS2; LH2; TLH"
                     /note="procollagen-lysine,2-oxoglutarate 5-dioxygenase 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 mRNAs, 47 ESTs, 900 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 90 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:5352"
                     /db_xref="HGNC:HGNC:9082"
                     /db_xref="MIM:601865"
     CDS             231..2231
                     /gene="PLOD2"
                     /gene_synonym="BRKS2; LH2; TLH"
                     /codon_start=1
                     /product="procollagen-lysine,2-oxoglutarate 5-dioxygenase
                     2 isoform X1"
                     /protein_id="XP_047304275.1"
                     /db_xref="GeneID:5352"
                     /db_xref="HGNC:HGNC:9082"
                     /db_xref="MIM:601865"
                     /translation="MKEVMEHYADQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKV
                     VFAADGILWPDKRLADKYPVVHIGKRYLNSGGFIGYAPYVNRIVQQWNLQDNDDDQLF
                     YTKVYIDPLKREAINITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNTFYETLPVAI
                     NGNGPTKILLNYFGNYVPNSWTQDNGCTLCEFDTVDLSAVDVHPNVSIGVFIEQPTPF
                     LPRFLDILLTLDYPKEALKLFIHNKEVYHEKDIKVFFDKAKHEIKTIKIVGPEENLSQ
                     AEARNMGMDFCRQDEKCDYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWS
                     NFWGALSPDGYYARSEDYVDIVQGNRVGVWNVPYMANVYLIKGKTLRSEMNERNYFVR
                     DKLDPDMALCRNAREMTLQREKDSPTPETFQMLSPPKGVFMYISNRHEFGRLLSTANY
                     NTSHYNNDLWQIFENPVDWKEKYINRDYSKIFTENIVEQPCPDVFWFPIFSEKACDEL
                     VEEMEHYGKWSGGKHHDSRISGGYENVPTDDIHMKQVDLENVWLHFIREFIAPVTLKV
                     FAGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIALNNVGEDFQGGGCKFLRY
                     NCSIESPRKGWSFMHPGRLTHLHEGLPVKNGTRYIAVSFIDP"
ORIGIN      
        1 agataaatta ttagtcataa ctgtagcaac aaaagaaagt gatggattcc atcgatttat
       61 gcagtcagcc aaatatttca attatactgt gaagaaagaa ggatctgtca gccaagtctt
      121 ttctacaaat aagaggagaa caaggagata cctaggtcct tggtcaagga gaagaatgga
      181 gaggtggtga tggaattaat agtattggag ggggccagaa agtgagatta atgaaagaag
      241 tcatggaaca ctatgctgat caagatgatc tggttgtcat gtttactgaa tgctttgatg
      301 tcatatttgc tggtggtcca gaagaagttc taaaaaaatt ccaaaaggca aaccacaaag
      361 tggtctttgc agcagatgga attttgtggc cagataaaag actagcagac aagtatcctg
      421 ttgtgcacat tgggaaacgc tatctgaatt caggaggatt tattggctat gctccatatg
      481 tcaaccgtat agttcaacaa tggaatctcc aggataatga tgatgatcag ctcttttaca
      541 ctaaagttta cattgatcca ctgaaaaggg aagctattaa catcacattg gatcacaaat
      601 gcaaaatttt ccagacctta aatggagctg tagatgaagt tgttttaaaa tttgaaaatg
      661 gcaaagccag agctaagaat acattttatg aaacattacc agtggcaatt aatggaaatg
      721 gacccaccaa gattctcctg aattattttg gaaactatgt acccaattca tggacacagg
      781 ataatggctg cactctttgt gaattcgata cagtcgactt gtctgcagta gatgtccatc
      841 caaacgtatc aataggtgtt tttattgagc aaccaacccc ttttctacct cggtttctgg
      901 acatattgtt gacactggat tacccaaaag aagcacttaa actttttatt cataacaaag
      961 aagtttatca tgaaaaggac atcaaggtat tttttgataa agctaagcat gaaatcaaaa
     1021 ctataaaaat agtaggacca gaagaaaatc taagtcaagc ggaagccaga aacatgggaa
     1081 tggacttttg ccgtcaggat gaaaagtgtg attattactt tagtgtggat gcagatgttg
     1141 ttttgacaaa tccaaggact ttaaaaattt tgattgaaca aaacagaaag atcattgctc
     1201 ctcttgtaac tcgtcatgga aagctgtggt ccaatttctg gggagcattg agtcctgatg
     1261 gatactatgc acgatctgaa gattatgtgg atattgttca agggaataga gtaggagtat
     1321 ggaatgtccc atatatggct aatgtgtact taattaaagg aaagacactc cgatcagaga
     1381 tgaatgaaag gaactatttt gttcgtgata aactggatcc tgatatggct ctttgccgaa
     1441 atgctagaga aatgacttta caaagggaaa aagactcccc tactccggaa acattccaaa
     1501 tgctcagccc cccaaagggt gtatttatgt acatttctaa tagacatgaa tttggaaggc
     1561 tattatccac tgctaattac aatacttccc attataacaa tgacctctgg cagatttttg
     1621 aaaatcctgt ggactggaag gaaaagtata taaaccgtga ttattcaaag attttcactg
     1681 aaaatatagt tgaacagccc tgtccagatg tcttttggtt ccccatattt tctgaaaaag
     1741 cctgtgatga attggtagaa gaaatggaac attacggcaa atggtctggg ggaaaacatc
     1801 atgatagccg tatatctggt ggttatgaaa atgtcccaac tgatgatatc cacatgaagc
     1861 aagttgatct ggagaatgta tggcttcatt ttatccggga gttcattgca ccagttacac
     1921 tgaaggtctt tgcaggctat tatacgaagg gatttgcact actgaatttt gtagtaaaat
     1981 actcccctga acgacagcgt tctcttcgtc ctcatcatga tgcttctaca tttaccataa
     2041 acattgcact taataacgtg ggagaagact ttcagggagg tggttgcaaa tttctaaggt
     2101 acaattgctc tattgagtca ccacgaaaag gctggagctt catgcatcct gggagactca
     2161 cacatttgca tgaaggactt cctgttaaaa atggaacaag atacattgca gtgtcattta
     2221 tagatcccta agttatttac ttttcattga attgaaattt attttggatg aatgactggc
     2281 atgaacacgt ctttgaagtt gtggctgaga agatgagagg aatatttaaa taacatcaac
     2341 agaacaactt cactttgggc caaacatttg aaaaactttt tataaaaaat tgtttgatat
     2401 ttcttaatgt ctgctctgag ccttaaaaca cagattgaag aagaaaagaa agaaaaaact
     2461 taaatattta tttctatgct ttgttgcctc tgagaataat gacaatttat gaatttgtgt
     2521 ttcaaattga taaaatattt aggtacaaat aacaagacta ataatatttt cttatttaaa
     2581 aaaagcatgg gaagattttt atttatcaaa atatagagga aatgtagaca aaatggatat
     2641 aaatgaaaat taccatgttg taaaaccttg aaaatcagat tctaactgga tttgtatgca
     2701 actaagtatt tttctgaaca cctatgcagg tcttatttac agtagttact aagggaacac
     2761 acaaagaatt acacaacgtt ttcctcaaga aaatggtaca aaacacaacc gaggagcgta
     2821 tacagttgaa aacatttttg ttttgattgg aaggcagatt attttatatt agtattaaaa
     2881 atcaaaccct atgtttcttt cagatgaatc ttccaaagtg gattatatta agcaggtatt
     2941 agatttagga aaacctttcc atttcttaaa gtattatcaa gtgtcaagat cagcaagtgt
     3001 ccttaagtca aacaggtttt ttttgttgtt gtttttgctt tgtttccttt tttagaaagt
     3061 tctagaaaat aggaaaacga aaaatttcat tgagatgagt agtgcattta attatttttt
     3121 aaaaaacttt ttaagtactt gaattttata tcaggaaaac aaagttgttg agccttgctt
     3181 cttccgtttt gccctttgtc tcgctcctta ttcttttttt ggggggaggg ttatttgctt
     3241 ttttatcttc ctggcataat ttccatttta ttcttctgag tgtctatgtt aacttccctc
     3301 tatcccgctt ataaaaaaat tctccaacaa aaatacttgt tgacttgatg ttttatcact
     3361 tctctaagta aggttgaaat atccttattg tagctactgt ttttaatgta aaggttaaac
     3421 ttgaaaagaa attcttaatc acggtgccaa aattcatttt ctaacaccat gtgttagaaa
     3481 attataaaaa ataaaataat tttagaaa
//
