LOCUS       XM_017023729            3079 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens phagosome assembly factor 1 (PHAF1),
            transcript variant X2, mRNA.
ACCESSION   XM_017023729
VERSION     XM_017023729.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000016.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017023729.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
     gene            1..3079
                     /gene="PHAF1"
                     /gene_synonym="C16orf6; C16orf70; lin-10; LIN10; MYTHO"
                     /note="phagosome assembly factor 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 12 ESTs, 514 long SRA reads, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 65 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:80262"
                     /db_xref="HGNC:HGNC:29564"
     CDS             107..1666
                     /gene="PHAF1"
                     /gene_synonym="C16orf6; C16orf70; lin-10; LIN10; MYTHO"
                     /codon_start=1
                     /product="phagosome assembly factor 1 isoform X1"
                     /protein_id="XP_016879218.1"
                     /db_xref="GeneID:80262"
                     /db_xref="HGNC:HGNC:29564"
                     /translation="MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQV
                     LYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIA
                     PTIEQIDQSFGATHPGGKPSPSDSSGHQWQFIAINLPGSAIPPHFLESGSHRIVGLVL
                     GCEGNILPLVFNLVGQFRNKPQGRCCQSLLPARLVYVSHFRCQSTMLFSSPPPPTVYN
                     SAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSL
                     QDTKAPMMPLSCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFER
                     SVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDI
                     LFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENADGQTETCTTYSKWDN
                     IQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPR
                     PGSHLRTAELP"
ORIGIN      
        1 gcagtcgcgc ccgccgccgt cgttgccccc gctgccgcgg ctgctgcagc tcgggtccct
       61 tctgcgctgc cgcagggagg ccgcccgggc caggcgagcc gaaccaatgc tggacctgga
      121 ggtagtgccc gaacgctctc tggggaacga gcaatgggaa ttcacgctgg gaatgcctct
      181 ggctcaggca gtagccattc ttcagaagca ctgtcgcatc atcaaaaacg tccaggttct
      241 ctacagtgaa cagtctcctc taagccatga cctcattctt aacctgactc aggacgggat
      301 caaactaatg tttgatgctt tcaatcagag acttaaggtg atcgaagtat gtgatttgac
      361 taaagtaaag ttaaaatatt gtggcgtgca ttttaattct caggccatag ctcctaccat
      421 tgaacagatt gaccagtctt ttggcgcaac ccatcctgga ggtaagccaa gtccatctga
      481 ttcctctggt catcagtggc agttcatagc aataaacctg cccggtagtg ccatcccacc
      541 ccacttcctg gagtcaggct cccataggat tgtggggttg gtacttgggt gtgaaggaaa
      601 catcctcccc cttgttttca acctagtagg ccagtttaga aacaagccac agggaaggtg
      661 ttgtcagtca ttactccctg ccaggctggt ttatgttagc catttcagat gccagtcaac
      721 catgttattt tcttctcccc cacccccaac agtgtacaac tccgctgagc agctcttcca
      781 tctcaacttc agaggactgt ctttctcttt tcagttagac tcatggactg aggctccaaa
      841 gtatgagccc aattttgccc atggcctggc ttctctccag ataccccatg gagcaactgt
      901 aaaacgaatg tacatctaca gtggcaacag cctgcaggat accaaggctc ccatgatgcc
      961 tctgagctgt ttcctgggca atgtctatgc tgagagtgta gatgttcttc gagatggaac
     1021 tggacctgca ggtttacgac ttcgcctact tgctgcaggt tgtggacctg gcctattagc
     1081 agatgccaag atgcgggtat ttgaacgttc agtgtatttt ggtgattcct gccaagatgt
     1141 tcttagcatg cttggctctc cacacaaagt cttctataaa tcagaagaca agatgaaaat
     1201 tcattctcct tcccctcata aacaagttcc atcgaagtgt aatgactact tttttaacta
     1261 cttcactctt ggagtggaca tcctctttga tgcgaataca cacaaagtga agaagtttgt
     1321 tctacacacc aattaccctg ggcattataa tttcaacatt tatcatcgct gtgagttcaa
     1381 gatcccacta gccataaaga aagaaaacgc agatggtcag acagaaacat gcacgaccta
     1441 cagcaagtgg gacaacatcc aggagctcct gggccaccct gtggagaagc ctgttgtcct
     1501 gcacaggtct tcctccccaa acaacaccaa cccatttggt tccacattct gctttggtct
     1561 tcagcgaatg atctttgagg tcatgcagaa caaccacatt gcctcggtga ccctgtatgg
     1621 cccccccagg cctggtagcc acctgagaac agcggaactc ccctagggac accaccaccc
     1681 atgcccctct gtcccgtgga actgtgcatc acatcctgct cagtgggcct ctgtaccacc
     1741 ctgtgggttt tcttggacac ctggccagtg ctgaagggct gttgtgatgt tctgaggttg
     1801 ggctcaggct gggtgctctg ccatgggctg agtggcccag atattcttct gtccatcttt
     1861 ggcctgctgg tgccagcagg ggacacagac tgcaaagaga agcacaaagt ttgagccttg
     1921 attcctggac ccaggagctc tcaactaaca aggaggcagg agaggtcaac ccttgtccca
     1981 tgcacattgg gaagacttgg ggctctttct gtgactgagg acacaggcac ccaggataag
     2041 gacaaggtcc tgcctttggc tccacattgc cacatgaccc ttaaggcaag caggtagcgt
     2101 gtccatagta cttggttgcg acatttgcac tacatccact ttagttactt gatgagctgg
     2161 ctgtggccag ggtggcccac ctgcccttcc ctgttccttt cttgcacgcg ctccctgcct
     2221 gggcacacca aactggttga aacacagctt tctaccatcc aggtacatgc ccaggcctgg
     2281 ttctcacccc tgttggagtc agctttcaag attgcctgtg cccctgctct gccccatcct
     2341 ggctggcagg gctgcatgtt tccatcctgt ttgcctcttt tatttaatgc caaagtttta
     2401 gccaaagaca tcttcctact tttgttgtgt ttcagcattc tgttctgcac tgtgggctgg
     2461 ctctctgccc caaccctggg cactggcccc tggctgggcc atttcatggc tcaaagcctc
     2521 tgggggctca aggaaggctg ggctgctcag tcccttcatg ggtcttgcta atggaaagta
     2581 gcatatatgt gctttaaaaa tattaatcct tttgaaaaga actgagaaga aaaatgtata
     2641 attttatccc atttttaata ttttggtcta gcaacttgtg atacatagat gacaattttg
     2701 tgagtttttc aaatgtgtgt acagattttt gtaaatatga ctcttttgta attaactcat
     2761 gtacagcctc atcctgtata gtttaatgat gaatgtgcag gggacctgtc tcaggctcct
     2821 atatggttcc tgggccttat agccaggttt gtgtggcgct cccgactttt gtgactgact
     2881 ggtgtcttcc catttggact gtggcctggc cagagcccct tgcatatccc cactgtcagg
     2941 ggcagccagg actgttccca tcctcctgga atgggggaac cttccttatc ccctgcccac
     3001 atcccctctc caataaagca cctgtgccct cagcaatggc ctgccatgtg ctgttgctgg
     3061 gatgtttgta ttaaggtaa
//
