LOCUS       NM_001348233            4165 bp    mRNA    linear   PRI 24-OCT-2024
DEFINITION  Homo sapiens olfactory receptor family 6 subfamily J member 1
            (OR6J1), mRNA.
ACCESSION   NM_001348233
VERSION     NM_001348233.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4165)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC243945.3.
            
            On Aug 3, 2020 this sequence version replaced NM_001348233.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. This olfactory receptor gene is a
            segregating pseudogene, where some individuals have an allele that
            encodes a functional olfactory receptor, while other individuals
            have an allele encoding a protein that is predicted to be
            non-functional. [provided by RefSeq, Jan 2017].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This gene is a segregating
            pseudogene. This RefSeq represents the protein encoded by the
            reference genome allele.
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000540461.2/ ENSP00000437629.1
            polymorphic pseudogene :: based on alignments, homology
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-255               AC243945.3         199148-199402       c
            256-4165            AC243945.3         185979-189888       c
FEATURES             Location/Qualifiers
     source          1..4165
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="14"
                     /map="14q11.2"
     gene            1..4165
                     /gene="OR6J1"
                     /gene_synonym="OR6J1P; OR6J2"
                     /note="olfactory receptor family 6 subfamily J member 1"
                     /db_xref="GeneID:79549"
                     /db_xref="HGNC:HGNC:14707"
     exon            1..255
                     /gene="OR6J1"
                     /gene_synonym="OR6J1P; OR6J2"
                     /inference="alignment:Splign:2.1.0"
     exon            256..4165
                     /gene="OR6J1"
                     /gene_synonym="OR6J1P; OR6J2"
                     /inference="alignment:Splign:2.1.0"
     CDS             283..1326
                     /gene="OR6J1"
                     /gene_synonym="OR6J1P; OR6J2"
                     /note="olfactory receptor, family 6, subfamily J, member 1
                     pseudogene; olfactory receptor 6J2; olfactory receptor,
                     family 6, subfamily J, member 2; seven transmembrane helix
                     receptor"
                     /codon_start=1
                     /product="olfactory receptor 6J1"
                     /protein_id="NP_001335162.1"
                     /db_xref="CCDS:CCDS86371.1"
                     /db_xref="GeneID:79549"
                     /db_xref="HGNC:HGNC:14707"
                     /translation="MGNWTAAVTEFVLLGFSLSREVELLLLVLLLPTFLLTLLGNLLI
                     ISTVLSCSRLHTPMYFFLCNLSILDILFTSVISPKVLANLGSRDKTISFAGCITQCYF
                     YFFLGTVEFLLLTVMSYDRYATICCPLRYTTIMRPSVCIGTVVFSWVGGFLSVLFPTI
                     LISQLPFCGSNIINHFFCDSGPLLALACADTTAIELMDFMLSSMVILCCIVLVAYSYT
                     YIILTIVRIPSASGRKKAFNTCASHLTIVIISSGITVFIYVTPSQKEYLEINKIPLVL
                     SSVVTPFLNPFIYTLRNDTVQGVLRDVWVRVRGVFEKRMRAVLRSRLSSNKDHQGRAC
                     SSPPCVYSVKLQC"
ORIGIN      
        1 cagtgtaaaa atccaacatg taccttccag ctgtctacaa cacaagtgca tgctcgtcgg
       61 acaagaggtc acagctaagg caacaatcca catgagttgg gaagggctca tttcacctgt
      121 caaacactgc tgctctcatg tggaatgcac tgtggctttt tggtcaagat aattaccgtg
      181 gaagatccta ggtggcagca aatcccaggt gaacagactg agccgtggag gtggcataag
      241 gcaaccctag ccgaggagaa ttgagccagg cccaccaggc ccatgggtaa ctggactgca
      301 gcggtgactg agtttgttct gctggggttt tccctgagca gggaggtgga gctgctgctc
      361 ctggtgctcc tgctgcccac gttcctgctg actcttctgg ggaacctgct catcatctcc
      421 actgtgctgt cctgctcccg cctccacacc cccatgtact tcttcttgtg caacctctct
      481 atcctggaca tcctcttcac ctcagtcatc tctccaaaag tgttggccaa cttaggatct
      541 agggataaaa ccatctcctt tgccggatgt atcacccagt gctatttcta ctttttcttg
      601 ggcacagttg agttcctcct gctgacggtc atgtcctatg accgttatgc caccatctgc
      661 tgccccctgc ggtacaccac catcatgaga ccttctgtct gcattgggac cgttgtattc
      721 tcttgggtgg gaggcttcct gtctgtgctc tttccaacca tcctcatctc ccagctgccc
      781 ttctgtggct ccaatatcat taaccacttc ttctgtgaca gtggaccctt gctggccctg
      841 gcctgtgcag acaccactgc catcgagctg atggatttta tgctttcttc catggtcatc
      901 ctctgctgca tagtcctcgt ggcctattcc tatacgtaca tcatcttgac catagtgcgc
      961 attccttctg caagtggaag gaagaaggcc tttaatacct gtgcttccca cctgaccata
     1021 gtcatcattt ctagtggcat cactgtgttt atctatgtga ctccctccca gaaagaatat
     1081 ctggagatca acaagatccc tttggttctg agcagtgtgg tgactccatt cctcaacccc
     1141 tttatatata ctctgaggaa tgacacagtg cagggagtcc tcagggatgt gtgggtcagg
     1201 gttcgaggag tttttgaaaa gaggatgagg gcagtgctga gaagcagatt atcctccaac
     1261 aaagaccacc aaggaagggc ttgctcttct ccaccatgtg tctattctgt aaagctccag
     1321 tgttagaaag agaggagctg ccttagtgaa agagtgagct agctaaggaa ttctgaatag
     1381 tctatagtgg aaagactgac tgcggagaca gagacttgaa cgctggcctt ggttttcact
     1441 ttaatctgtg accgcagctg tgtcaccagc cattctgact ctcagtactc tcagctgaag
     1501 tgcaacaggg ctggacttga tgatctctaa gccccatcca cactgaatat tgtaagaatg
     1561 gaagggccat gcagcctatt tcctcctaaa gtcctaacat gtttggcccc atttctttat
     1621 ggatcccgaa cacaactgtt ctatcggctt gacacgaagt ccttcctgaa cttctctgca
     1681 cggaccctct ttctttccat cctctgcagg atctttttag aaataacctt cattattctc
     1741 taatccacta tcatatccat ttttttttcg ggcatttgca atgattgtgt tgggtgcatg
     1801 tcatctgtgt tatttaataa tattgctttc tgtaatagaa catgttcata atatccaata
     1861 tgctcatgtc gttatgtaag acatggccct gttcccctag ccactaatga ttgatccatg
     1921 gatggataat ctgactgaag gcataaccca tcacctgcag ggacacttgc acacctaaga
     1981 gactggccag tgacctatga cctgtgtggc ttggctggac cagaggagct gtgtaaacag
     2041 atacgacttt tttgagaaat tgaagcaaaa aacacagaga ttattccaca caagtgtgat
     2101 gcttcccctg gaagcagaaa taggcttggt ggctggagtg gccactttgg gtgccaggtg
     2161 caagctgatg aataattaga ggaaaccagt ctgcccctca gagagaatgc agttgatgta
     2221 tagagaaaaa cagagaagag agagatgaca gcccactcac aacacaaagg cacaacacaa
     2281 agagccctct tctctcatga cttcctaggg ctggagctgg tagaattttg attcctattc
     2341 ctggatttga tgtgttttgc ctgtacctgt aaatgaaatc cctttttatt gagctatctt
     2401 gagaaggtct tagattcttg tgaccaaaaa gcagcttgac tacaaagttc attatctctc
     2461 cacaaggcat agcttctccc cttttctggc tccatacacc tggaaagaat ctgttttgtt
     2521 tttgttttga gacggagtct cactctgtcg cccaggatgg agtgcagtgg tgcaatctca
     2581 gctcactgca acctccgcct cctgggttca agtgattctt ctgcctcagc ctcctgagta
     2641 gctgggacca caggcgcgtg ccaccatgcc tggctaattt ttgtattttt agtagagatg
     2701 gggcttcact gtgttagcca ggatggtctc gatctcctga actcgtgatc tgcccacatc
     2761 ggcctcccaa agtgctggga ttagaggcat gagccactgc gcccagccaa gaatctgttt
     2821 ttaactgcat tcctagtctg aattcttggt gcccaaacac tgtctgggat gcttacttgg
     2881 acccactctg ggcctgtggt tcagctcagt gcaaaccagc ttttcaatat catcagaatc
     2941 tctgaggttt aatttcttgt cttgcttggc cgccagtgct gcagcatcca ctttgctaaa
     3001 ttaaccccta tgctctgcgt ggaactggtc agaaggacac atgcatacct aaggaactgc
     3061 tgcagagttc tgtggacata aatgaagact acttaaatga gcacagatgc cacttattca
     3121 gagctagcta tatcagggga gtcagccacc atcacttgca tttggcagag agtcaaaggc
     3181 aggcagggga gtggaaagct tcatagtaga aaaaaaggga aaggcccgag tattccctga
     3241 ctggaggatt ttggcatggg gaagctggag gtgagctaac tagtgttgcg ggaagtcagg
     3301 caccccaaac ggagggaccg gctgaagcca tggcagaaga atgtggatag tgaagatttc
     3361 atggacactt atcacttccc caatgaatac ccttgtgatt tcctatgcct gtctttaatc
     3421 tcttaatcct gtcagctgag gaagatgtat gtcacctcag gaccatgtga taattgtgtt
     3481 aactgcacaa attgtagagc atgtgtgttt gaacaaatac gaaatctggg caccttggaa
     3541 aaagaacagg ataacagcaa ttgttcaggg aataagagag acaaccttaa actctgaccg
     3601 ctggtgagcc ggggggaaca gagccatatt tctcttcttt caaaagcaaa tgggaggaat
     3661 atcactgaat tctttttctc agcaaggaac atccctggga aagagagtac gcgcctggga
     3721 gtgtagtcct atagacggcc cccctgggcg tgcccgtctt ttatggtctg tagactgtag
     3781 gggtcaaata gaccccagtc tcccatagcg ctcccaggct tattaggaag aggaaatttc
     3841 cacctaataa attttggtca gactggttgc tctcaaaacc ctgtctcctg ataagatgtt
     3901 atcaatgaca atggtgcccg aaacttcatt agcaatttta atttcaccct ggtcctgtgg
     3961 tcctgtgatc tcgccatgcc tccctttgcc ttgtgatatt ctattacttt gtaaagtacg
     4021 tgacctctgt gacccacacc tattcgtaca ctccctcccc ttttgaaagt ccctaataaa
     4081 aacttgctgg tttttgtggc ttggggggca tcatggaacc tagtgacatg tgatgtctcc
     4141 cccggctgcc cagctttaaa atttc
//
