LOCUS       NM_001330067            1239 bp    mRNA    linear   PRI 08-APR-2024
DEFINITION  Homo sapiens opsin 1, medium wave sensitive 3 (OPN1MW3), mRNA.
ACCESSION   NM_001330067 XM_003960089
VERSION     NM_001330067.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC245140.2.
            
            On Jul 16, 2021 this sequence version replaced NM_001330067.1.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            MANE Ensembl match        :: ENST00000599405.4/ ENSP00000469970.1
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               AC245140.2         163217-163366       c
            151-447             AC245140.2         157940-158236       c
            448-616             AC245140.2         155784-155952       c
            617-782             AC245140.2         154151-154316       c
            783-1022            AC245140.2         152357-152596       c
            1023-1239           AC245140.2         149858-150074       c
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
                     /map="Xq28"
     gene            1..1239
                     /gene="OPN1MW3"
                     /gene_synonym="GCP; GOP; OPN1MW; OPN1MW2"
                     /note="opsin 1, medium wave sensitive 3"
                     /db_xref="GeneID:101060233"
                     /db_xref="HGNC:HGNC:51831"
     exon            1..150
                     /gene="OPN1MW3"
                     /gene_synonym="GCP; GOP; OPN1MW; OPN1MW2"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..1133
                     /gene="OPN1MW3"
                     /gene_synonym="GCP; GOP; OPN1MW; OPN1MW2"
                     /note="green-sensitive opsin; green cone photoreceptor
                     pigment; opsin 1 cone pigments medium-wave-sensitive 3;
                     opsin 1 (cone pigments), medium-wave-sensitive 3;
                     Medium-wave-sensitive opsin 2; Opsin 1 cone pigments
                     medium-wave-sensitive 2"
                     /codon_start=1
                     /product="medium-wave-sensitive opsin 3"
                     /protein_id="NP_001316996.1"
                     /db_xref="CCDS:CCDS83509.1"
                     /db_xref="GeneID:101060233"
                     /db_xref="HGNC:HGNC:51831"
                     /translation="MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPN
                     YHIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAE
                     TVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFG
                     NVRFDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQS
                     YMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVLA
                     FCFCWGPYAFFACFAAANPGYPFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL
                     QLFGKKVDDGSELSSASKTEVSSVSSVSPA"
     exon            151..447
                     /gene="OPN1MW3"
                     /gene_synonym="GCP; GOP; OPN1MW; OPN1MW2"
                     /inference="alignment:Splign:2.1.0"
     exon            448..616
                     /gene="OPN1MW3"
                     /gene_synonym="GCP; GOP; OPN1MW; OPN1MW2"
                     /inference="alignment:Splign:2.1.0"
     exon            617..782
                     /gene="OPN1MW3"
                     /gene_synonym="GCP; GOP; OPN1MW; OPN1MW2"
                     /inference="alignment:Splign:2.1.0"
     exon            783..1022
                     /gene="OPN1MW3"
                     /gene_synonym="GCP; GOP; OPN1MW; OPN1MW2"
                     /inference="alignment:Splign:2.1.0"
     exon            1023..1239
                     /gene="OPN1MW3"
                     /gene_synonym="GCP; GOP; OPN1MW; OPN1MW2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agggccggct gccgtcgggg acagggcttt ccatagccat ggcccagcag tggagcctcc
       61 aaaggctcgc aggccgccat ccgcaggaca gctatgagga cagcacccag tccagcatct
      121 tcacctacac caacagcaac tccaccagag gccccttcga aggcccgaat taccacatcg
      181 ctcccagatg ggtgtaccac ctcaccagtg tctggatgat ctttgtggtc attgcatccg
      241 tcttcacaaa tgggcttgtg ctggcggcca ccatgaagtt caagaagctg cgccacccgc
      301 tgaactggat cctggtgaac ctggcggtcg ctgacctggc agagaccgtc atcgccagca
      361 ctatcagcgt tgtgaaccag gtctatggct acttcgtgct gggccaccct atgtgtgtcc
      421 tggagggcta caccgtctcc ctgtgtggga tcacaggtct ctggtctctg gccatcattt
      481 cctgggagag atggatggtg gtctgcaagc cctttggcaa tgtgagattt gatgccaagc
      541 tggccatcgt gggcattgcc ttctcctgga tctgggctgc tgtgtggaca gccccgccca
      601 tctttggttg gagcaggtac tggccccacg gcctgaagac ttcatgcggc ccagacgtgt
      661 tcagcggcag ctcgtacccc ggggtgcagt cttacatgat tgtcctcatg gtcacctgct
      721 gcatcacccc actcagcatc atcgtgctct gctacctcca agtgtggctg gccatccgag
      781 cggtggcaaa gcagcagaaa gagtctgaat ccacccagaa ggcagagaag gaagtgacgc
      841 gcatggtggt ggtgatggtc ctggcattct gcttctgctg gggaccctac gccttcttcg
      901 catgctttgc tgctgccaac cctggctacc ccttccaccc tttgatggct gccctgccgg
      961 ccttctttgc caaaagtgcc actatctaca accccgttat ctatgtcttt atgaaccggc
     1021 agtttcgaaa ctgcatcttg cagcttttcg ggaagaaggt tgacgatggc tctgaactct
     1081 ccagcgcctc caaaacggag gtctcatctg tgtcctcggt atcgcctgca tgaggtctgc
     1141 ctcctaccca tcccgcccac cggggctttg gccacctctc ctttccccct ccttctccat
     1201 ccctgtaaaa taaatgtaat ttatctttgc caaaaccaa
//
