LOCUS       NM_001384980            4020 bp    mRNA    linear   PRI 15-FEB-2024
DEFINITION  Homo sapiens nuclear pore complex interacting protein family member
            B4 (NPIPB4), transcript variant 3, mRNA.
ACCESSION   NM_001384980
VERSION     NM_001384980.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Loftus,B.J., Kim,U.J., Sneddon,V.P., Kalush,F., Brandon,R.,
            Fuhrmann,J., Mason,T., Crosby,M.L., Barnstead,M., Cronin,L.,
            Deslattes Mays,A., Cao,Y., Xu,R.X., Kang,H.L., Mitchell,S.,
            Eichler,E.E., Harris,P.C., Venter,J.C. and Adams,M.D.
  TITLE     Genome duplications and other features in 12 Mb of DNA sequence
            from human chromosome 16p and 16q
  JOURNAL   Genomics 60 (3), 295-308 (1999)
   PUBMED   10493829
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC092375.4.
            
            Transcript Variant: This variant (3) differs in the 5' UTR compared
            to variant 1. Variants 1-3 all encode the same isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14038191.554475.1,
                                           SRR14038194.2630191.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1966682, SAMEA2142363
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000682606.1/ ENSP00000507812.1
            RefSeq Select criteria :: based on manual assertion, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-177               AC092375.4         83863-84039         c
            178-335             AC092375.4         83542-83699         c
            336-464             AC092375.4         73696-73824         c
            465-564             AC092375.4         69977-70076         c
            565-760             AC092375.4         69669-69864         c
            761-821             AC092375.4         65533-65593         c
            822-857             AC092375.4         65388-65423         c
            858-4020            AC092375.4         60865-64027         c
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16p12.2"
     gene            1..4020
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /note="nuclear pore complex interacting protein family
                     member B4"
                     /db_xref="GeneID:440345"
                     /db_xref="HGNC:HGNC:41985"
     exon            1..177
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /inference="alignment:Splign:2.1.0"
     exon            178..335
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /inference="alignment:Splign:2.1.0"
     CDS             216..3884
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /note="isoform a is encoded by transcript variant 3;
                     nuclear pore complex interacting protein-like"
                     /codon_start=1
                     /product="nuclear pore complex-interacting protein family
                     member B4 isoform a"
                     /protein_id="NP_001371909.1"
                     /db_xref="CCDS:CCDS92123.1"
                     /db_xref="GeneID:440345"
                     /db_xref="HGNC:HGNC:41985"
                     /translation="MVKLSIVLTPQFLSHDQGQLTKELQQHVKSVTCPCEYLRKVINT
                     LADHHHRGTDFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTD
                     VQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIVLKDVITLRRHVETKVRAKIRKR
                     KVTTKINHHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVRMA
                     AAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSITDNSLSLKTPPECLLTPLPP
                     SADDNLKTPPECVLTPLPPSADDNLKTPPECVLTPLPPSADDNLKTPPECLLTPLPPS
                     ADDKLKTPPECLLTPLPPSALPSAPPSADDNLKTRAECLLHPLPPSADDNLKTPSERQ
                     LTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNI
                     KTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSAD
                     DNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPP
                     SAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAFH
                     PQRMIISRHLPSVSSLPFHPQLHPQQMIISRYLLSVCGFRFHHQPMIISRHLPSVSSL
                     PFHPQLHPQQMIISRHLPSVCGGRFHPQRMIISRHLPSVSSLPFHPQLHPQQMIISRH
                     LPSVCGGRFHPQRMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPQRMII
                     SRHLPSVSSLPFHTQLHPQQMIISRHLPSVCGERLRGPLPPSADDNLKTPSERQLTPL
                     PPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPA
                     ERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLK
                     TPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPP
                     SADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGP
                     LPPSADDNLKTPPLATQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRR
                     RAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRR
                     RAADVEPSLPEPKRRRLS"
     exon            336..464
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /inference="alignment:Splign:2.1.0"
     exon            465..564
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /inference="alignment:Splign:2.1.0"
     exon            565..760
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /inference="alignment:Splign:2.1.0"
     exon            761..821
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /inference="alignment:Splign:2.1.0"
     exon            822..857
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /inference="alignment:Splign:2.1.0"
     exon            858..4020
                     /gene="NPIPB4"
                     /gene_synonym="61E3.4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttcaggca cagaactgta tatccaataa tagtgaaatg gatcccacta attatgacag
       61 aaatgatgat acatttaaat gacttggatg ttttataggt atgatctcgt gaaatcttga
      121 gagaaactga atgacgaatg aaactattgt tcctgtttca cacagaagaa aactgaggtt
      181 ggcactcatc atgagcccct gttctcattc tgcaaatggt gaagctctct attgtcctga
      241 ccccacagtt cctgtcccat gaccagggcc agctcaccaa ggagctgcag cagcatgtaa
      301 agtcagtgac atgcccatgc gagtacctga ggaaggttat caatactctg gctgaccatc
      361 atcatcgtgg gactgacttt ggtggaagtc cttggttaca tgtcattatt gcatttccga
      421 caagttataa agttgtcatt accctctgga tagtttacct ttgggtgtct ctcctgaaga
      481 ctatcttctg gtctcgaaat ggacatgatg gatccacgga tgtacagcag agagcctgga
      541 ggtccaaccg ccgtagacag gaagggctga ggtccatttg tatgcacaca aagaaaagag
      601 tttcttcctt tcgaggaaat aaaattgtcc tgaaagacgt cattactcta cggagacatg
      661 tggaaacaaa agttagagct aaaatccgta agaggaaggt gacaacgaaa atcaaccatc
      721 atgacaaaat caatggaaag aggaagaccg ccagaaaaca gaaaatgttt caacgtgcgc
      781 aagagttgcg gcggcgagca gaggactacc acaaatgcaa aatcccccct tctgcaagaa
      841 aggctctttg caactgggtc agaatggcgg cagcggagca tcgtcattct tcaggattgc
      901 cctactggcc ctacctcaca gctgaaactt taaaaaacag gatgggccac cagccacctc
      961 ctccaactca acaacattct ataactgata actccctgag cctcaagaca cctcccgagt
     1021 gtctgctcac tccccttcca ccctcagcgg atgataatct caagacacct cccgagtgtg
     1081 tgctcactcc ccttccaccc tcagcggatg ataatctcaa gacacctccc gagtgtgtgc
     1141 tcactcccct tccaccctca gcggatgata atctcaagac acctcctgag tgtctcctca
     1201 ctccccttcc accctcagcg gatgataaac tcaagacacc tcccgagtgt ctgctcactc
     1261 cccttccacc ctcagctcta ccctcagctc caccctcagc ggatgataat ctcaagacac
     1321 gtgccgagtg tctgctccat ccccttccac cctcagcgga tgataatctc aagacacctt
     1381 ccgagcgtca gctcactccc cttccaccct cagctccacc ctcagcagat gataatatca
     1441 agacacctgc cgagcgtctg cgggggccgc ttccaccctc agcggatgat aatctcaaga
     1501 caccttccga gcgtcagctc actccccttc caccctcagc tccaccctca gcagatgata
     1561 atatcaagac acctgctgag cgtctgcggg ggccgcttcc accctcagcg gatgataatc
     1621 tcaagacacc ttccgagcgt cagctcactc cccttccacc ctcagctcca ccctcagcag
     1681 atgataatat caagacacct gccgagcgtc tgcgggggcc gcttccaccc tcagcggatg
     1741 ataatctcaa gacaccttcc gagcgtcagc tcactcccct tccaccctca gctccaccct
     1801 cagcagatga taatatcaag acacctgccg agcgtctgcg ggggccgctt ccaccctcag
     1861 cggatgataa tctcaagaca ccttccgagc gtcagctcac tccccttcca ccctcagctc
     1921 caccctcagc agatgataat atcaagacac ctgccgagcg tctgcggggg ccgcttccac
     1981 cctcagcgga tgataatctc aagacacctt ccgagcgtca gctcactccc cttccaccct
     2041 cagctccacc ctcagcagat gataacatca agacacctgc cttccaccct cagcggatga
     2101 taatctcaag acaccttccg agcgtcagct cactcccctt ccaccctcag ctccaccctc
     2161 agcagatgat aatatcaaga tacctgctga gcgtctgcgg attccgcttc caccatcagc
     2221 cgatgataat ctcaagacac cttccgagcg tcagctcact ccccttccac cctcagctcc
     2281 accctcagca gatgataata tcaagacacc tgccgagcgt ctgcgggggc cgcttccacc
     2341 ctcagcggat gataatctca agacaccttc cgagcgtcag ctcactcccc ttccaccctc
     2401 agctccaccc tcagcagatg ataatatcaa gacacctgcc gagcgtctgc gggggccgct
     2461 tccaccctca gcggatgata atctcaagac accttccgag cgtcagctca ctccccttcc
     2521 accctcagct ccaccctcag cagatgataa tatcaagaca cctgccgagc gtctgcgggg
     2581 gccgcttcca ccctcagcgg atgataatct caagacacct tccgagcgtc agctcactcc
     2641 ccttccacac tcagctccac cctcagcaga tgataatatc aagacacctg ccgagcgtct
     2701 gcggggagcg tctgcggggg ccgcttccac cctcagcgga tgataatctc aagacacctt
     2761 ccgagcgtca gctcactccc cttccaccct cagctccacc ctcagcagat gataatatca
     2821 agacacctgc cgagcgtctg cgggggccgc ttccaccctc agcggatgat aatctcaaga
     2881 caccttccga gcgtcagctc actccccttc caccctcagc tccaccctca gcagatgata
     2941 atatcaagac acctgccgag cgtctgcggg ggccgcttcc accctcagcg gatgataatc
     3001 tcaagacacc ttccgagcgt cagctcactc cccttccacc ctcagctcca ccctcagcag
     3061 atgataatat caagacacct gccgagcgtc tgcgggggcc gcttccaccc tcagcggatg
     3121 ataatctcaa gacaccttcc gagcgtcagc tcactcccct tccaccctca gctccaccct
     3181 cagcagatga taatatcaag acacctgccg agcgtctgcg ggggccgctt ccaccctcag
     3241 cggatgataa tctcaagaca ccttccgagc gtcagctcac tccccttcca ccctcagctc
     3301 caccctcagc agatgataat atcaagacac ctgccgagcg tctgcggggg ccgcttccac
     3361 cctcagcgga tgataatctc aagacacctt ccgagcgtca gctcactccc cttccaccct
     3421 cagctccacc ctcagcagat gataatatca agacacctgc cgagcgtctg cgggggccgc
     3481 ttccaccctc agccgatgat aatctcaaga cacctccctt agctactcag gaggctgagg
     3541 cagaaaaacc acgcaaaccc aagaggcaga gggcggctga gatggaacca cctcccgaac
     3601 ccaagaggcg gagggtcggt gacgtggaac cgtcacgcaa acccaagagg cggagggccg
     3661 ctgacgtgga accatcatca cccgaaccca agaggcggag ggtcggtgat gtggaaccgt
     3721 cacgcaaacc caagaggcgg agggccgctg acgtggaacc atcatcaccc gaacccaaga
     3781 ggcggagggt cggtgacgtg gaaccgtcac gcaaacccaa gaggcggagg gccgctgacg
     3841 tggaaccatc attacccgaa cccaagaggc ggaggttgag ctgagaagag gccagtgcac
     3901 tcaagcctga gcaataagaa taaaaccgag tagaacaaaa taaaaaattc aaaaaacaaa
     3961 acaaaaccca cactccaaaa actaacaaag aataaataaa taatataaaa ataaaataaa
//
