LOCUS       NM_001395859            6292 bp    mRNA    linear   PRI 08-APR-2024
DEFINITION  Homo sapiens nuclear pore complex interacting protein family,
            member B13 (NPIPB13), transcript variant 2, mRNA.
ACCESSION   NM_001395859
VERSION     NM_001395859.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 6292)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 6292)
  AUTHORS   Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
            Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
            Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
            Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
            Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
            Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
  TITLE     Diversification of transcriptional modulation: large-scale
            identification and characterization of putative alternative
            promoters of human genes
  JOURNAL   Genome Res 16 (1), 55-65 (2006)
   PUBMED   16344560
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC106782.5.
            
            On Sep 9, 2021 this sequence version replaced NM_001395859.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14038191.1844387.1,
                                           SRR14038194.2720299.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1966682, SAMEA2142586
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000697092.1/ ENSP00000513103.1
            RefSeq Select criteria :: based on manual assertion, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2705              AC106782.5         54817-57521         c
            2706-2863           AC106782.5         54496-54653         c
            2864-2992           AC106782.5         44493-44621         c
            2993-3092           AC106782.5         40790-40889         c
            3093-3288           AC106782.5         40482-40677         c
            3289-3349           AC106782.5         36351-36411         c
            3350-3385           AC106782.5         36206-36241         c
            3386-6292           AC106782.5         31939-34845         c
FEATURES             Location/Qualifiers
     source          1..6292
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16p11.2"
     gene            1..6292
                     /gene="NPIPB13"
                     /note="nuclear pore complex interacting protein family,
                     member B13"
                     /db_xref="GeneID:613037"
                     /db_xref="HGNC:HGNC:41989"
     exon            1..2705
                     /gene="NPIPB13"
                     /inference="alignment:Splign:2.1.0"
     exon            2706..2863
                     /gene="NPIPB13"
                     /inference="alignment:Splign:2.1.0"
     CDS             2744..6160
                     /gene="NPIPB13"
                     /note="nuclear pore complex interacting protein member;
                     Putative NPIP-like protein LOC613037"
                     /codon_start=1
                     /product="nuclear pore complex-interacting protein family
                     member B13"
                     /protein_id="NP_001382788.1"
                     /db_xref="CCDS:CCDS81968.1"
                     /db_xref="GeneID:613037"
                     /db_xref="HGNC:HGNC:41989"
                     /translation="MVKLSIVLTPQFLSHDQGQLTKELQQHVKSVTCPCEYLRKVINT
                     LADHHHRGTDFGGSPWLHVIIAFPTSYKVVITLWIVYLWVSLLKTIFWSRNGHDGSTD
                     VQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKR
                     KVTTKINHHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVRMA
                     AAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSITDNSLSLKTPPECVLTPLPP
                     SADDNLKTPPECVLTPLPPSADDNLKTPPECLLTPLPPSADDNLKTPPECLLTPLPPS
                     ADDNLKTPPECLLTPLPPSAPPSAPPSADDNLKTRAECLLHPLPPSADDNLKTPSERQ
                     LTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNI
                     KTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSAD
                     DNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPP
                     SAPPSADDNIKTPAFHPQRMIISRHLPSVSSLPFHPQLHSQQMIISRYLLSVCGFRFH
                     HQPMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPQRMIISRHLPSVSSL
                     PFHPQLHPQQMIISRHLPSVCGGRFHPQRMIISRHLPSVSSLPFHPQLHPQQMIISRH
                     LPSVCGERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRRPLPPS
                     ADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPL
                     PPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPA
                     ERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLK
                     TPSERQLTPLPPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPPLATQEAEAEKPRK
                     PKRQRAAEMEPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPKPKRRRVGDVEPSRKP
                     KRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRLS"
     exon            2864..2992
                     /gene="NPIPB13"
                     /inference="alignment:Splign:2.1.0"
     exon            2993..3092
                     /gene="NPIPB13"
                     /inference="alignment:Splign:2.1.0"
     exon            3093..3288
                     /gene="NPIPB13"
                     /inference="alignment:Splign:2.1.0"
     exon            3289..3349
                     /gene="NPIPB13"
                     /inference="alignment:Splign:2.1.0"
     exon            3350..3385
                     /gene="NPIPB13"
                     /inference="alignment:Splign:2.1.0"
     exon            3386..6292
                     /gene="NPIPB13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatagattct acctttgtca cccaggcggg agtgcagtgg catgatctcg gctcactaca
       61 acctccgcat cctgggttca agcagttctc ctgtctcagc ctcccgagta gctgagatta
      121 caggcatgtg ccaccaggca tggctaattt ttgtattttt agtggagaca gggtttcact
      181 ctattaggct ggtctggaac tcccgacctc aggtgatcca cgtgcctttg tctcccaaag
      241 tgctgggatt acaggcatga gtgacggtgc ccagccattc gtgacatgtt tatacaaata
      301 taactttagc aaatatttag cataactatc aaaattacaa atcatattaa atttgtataa
      361 atgtatgcaa tttttggaac acgcatatca acaacatacc cataaatata actgagatga
      421 gatctaatgt cacctcactt gacagtgccc tcccatgcag tatcgccaca tttgacaatg
      481 cctgcccatt taatctacca aataaatcga atcacttaat acctctacaa gatgagagat
      541 acattcttta gactccccaa gggatgcagc tgaaaaaaat cccaaagtta gttttaagcc
      601 aaaaagactt gatttaggat tttgacactg gagaaaccca tcaaagacgt caagtttgaa
      661 aacacttgat caaaacagaa tcacaggtca ctattaaaag agtattaatt taaccagaga
      721 cttccaaagc aatacagaaa cttacatgga tataaaaacc ctaacccttt taaaggtcag
      781 atttgctaag tgatcaaaag gggtacttga attgaatcga cacaggaaga gtgtgtacag
      841 ggttatgagt gtaggcagat ggttactttg gtcatatctc catttgccac ctgattacac
      901 atgagaatgg catctttact caccagaaag ccagtattat aggaggtgta ggaggcattc
      961 ttggacttga gacaagaaca ttgttgtgta gaaatttcat tgactgtgtt aaaattattc
     1021 tccatgggct ggagaacaca taacatggcc tttagaatga gacgggcatt gattggatgc
     1081 aaggtctcca cacttactag ctgtgtgaca ttggacagag tgcttcatca ttccgagact
     1141 cagtttttaa aggaaaaaca actaccttgc aagcttgctg gcaggtttaa gtgtaataat
     1201 gtgtgggaat gactgcaccg tgactaacat gcagtgacag cttaattaat gttaaccctt
     1261 atcattatca tataagaatg tgagttacat aagagaggag tcctgtcagt tcgttctctg
     1321 ctgtgtcccc aagaccatga atcatggctg gcatgtagta ggcatttaat aatatatgtt
     1381 caacaagtat ttggcagtct tggagggcag aaaaggaggt ggggaagatt tttaaataac
     1441 attttttaaa aagtcacatt gtcctacaat accgattttt cttgcatatt taggaaattg
     1501 aggatttttt tctaaaacat gcggacatat gggaaatagg atgcaacatt tgcactaatg
     1561 tttcagacac agttagaggt ttccaagaga ttttgcgctg gggaggctgc ttgctacaag
     1621 ctcccaaagc tctgggagga catagtattc attcctccct cagcagaagc ggtgaggcaa
     1681 gaagctctgg ggagcaccca gccttggact tttagcatag tgtgtcaggt cttcatagtt
     1741 tgggcccagg gcacagagaa gtcacagctc tctggcatcc tgtgaccttt accctctttg
     1801 ccaagggaaa atgtggccca ccaaagcaag aaacttgagg gcatgggtca ccccagccct
     1861 ggcatctgcc cagagcccga gaaggaagga acaatgatcc tccagctacc tcacggggct
     1921 ggcacaggtg accactgccc tggcatcacc cagctgtgtc cggcagcctg aaccccatct
     1981 gtggggatgc gaggaggaaa atacaaaagt ccttaggtga acactgagaa ggcagatgta
     2041 gcagaaacct ccaggccaga actacccagt cttggaccta tggtggagat agagcatagc
     2101 tggcaatcat gtgtacttac actctaaggt cacctggttg cactgtggcc tcatctgtgg
     2161 ctctgaaaat gaagatttgg aaggagatca tcacagctaa tgttaacaag cccctcctgt
     2221 gtgccaaatc attcacccct caccacaacc gaatgagcta aggattctca ttatatatag
     2281 tttatggaga gggaagtgca gacataaaga ggtgaattat cttacccaga tcacacagct
     2341 gataagtggt ggaggcagaa tagaatctaa acagtgtggc tccggagccc acatgcattg
     2401 attcgacaag tgtttattga gcacctgcca cggacaaggc cttgtgtgat taaatagggt
     2461 tataattagt aatataaaaa tgagaaatca ctaatgcttt ttagacttaa cattttcttt
     2521 ttttgtaggt ttcaggcaca gaactgtata tccaataata gtgaaatgga tcccactaat
     2581 tatgacagaa atgatgatac atttaaatga cttggatgtt ttataggtat gatctcgtga
     2641 aaccttgaga gaaactgaat gacgaatgaa actattgttc ctgtttcaca cagaagaaaa
     2701 ctgaggttgg cactcatcat gagcccctgt tctcattctg caaatggtga agctctctat
     2761 tgtcctgacc ccacagttcc tgtcccatga ccagggccag ctcaccaagg agctgcagca
     2821 gcatgtaaag tcagtgacat gcccatgcga gtacctgagg aaggttatca atactctggc
     2881 tgaccatcat catcgtggga ctgactttgg tggaagtcct tggttacatg tcattattgc
     2941 gtttccgaca agttataaag ttgtcattac cctctggata gtttaccttt gggtgtctct
     3001 cctgaagact atcttctggt ctcgaaatgg acatgatgga tccacggatg tacagcagag
     3061 agcctggagg tccaaccgcc gtagacagga agggctgagg tccatttgta tgcacacaaa
     3121 gaaaagagtt tcttcctttc gaggaaataa aattggcctg aaagacgtca ttactctacg
     3181 gagacatgtg gaaacaaaag ttagagctaa aatccgtaag aggaaggtga caacgaaaat
     3241 caaccatcat gacaaaatca atggaaagag gaagaccgcc agaaaacaga aaatgtttca
     3301 acgtgcgcaa gagttgcggc ggcgggcaga ggactaccac aaatgcaaaa tccccccttc
     3361 tgcaagaaag gctctttgca actgggtcag aatggcggca gcggagcatc gtcattcttc
     3421 aggattgccc tactggccct acctcacagc tgaaacttta aaaaacagga tgggccacca
     3481 gccacctcct ccaactcaac aacattctat aactgataac tccctgagcc tcaagacacc
     3541 tcccgagtgt gtgctcactc cccttccacc ctcagcggat gataatctca agacacctcc
     3601 cgagtgtgtg ctcactcccc ttccaccctc agcggatgat aatctcaaga cacctcctga
     3661 gtgtctgctc actccccttc caccctcagc ggatgataat ctcaagacac ctcctgagtg
     3721 tctgctcact ccccttccac cctcagcgga tgataatctc aagacacctc ccgagtgtct
     3781 gctcactccc cttccaccct cagctccacc ctcagctcca ccctcagcgg atgataatct
     3841 caagacacgt gccgagtgtc tgctccatcc ccttccaccc tcagcggatg ataatctcaa
     3901 gacaccttcc gagcgtcagc tcactcccct tccaccctca gctccaccct cagcagatga
     3961 taatatcaag acacctgccg agcgtctgcg ggggccgctt ccaccctcag cggatgataa
     4021 tctcaagaca ccttccgagc gtcagctcac tccccttcca ccctcagctc caccctcagc
     4081 agatgataat atcaagacac ctgccgagcg tctgcggggg ccgcttccac cctcagcgga
     4141 tgataatctc aagacacctt ccgagcgtca gctcactccc cttccaccct cagctccacc
     4201 ctcagcagat gataatatca agacacctgc cgagcgtctg cgggggccgc ttccaccctc
     4261 agcggatgat aatctcaaga caccttccga gcgtcagctc actccccttc caccctcagc
     4321 tccaccctca gcagatgata atatcaagac acctgccgag cgtctgcggg ggccgcttcc
     4381 accctcagcg gatgataatc tcaagacacc ttccgagcgt cagctcactc cccttccacc
     4441 ctcagctcca ccctcagcag atgataatat caagacacct gccttccacc ctcagcggat
     4501 gataatctca agacaccttc cgagcgtcag ctcactcccc ttccaccctc agctccactc
     4561 tcagcagatg ataatatcaa gatacctgct gagcgtctgc ggattccgct tccaccatca
     4621 gccgatgata atctcaagac accttccgag cgtcagctca ctccccttcc accctcagct
     4681 ccaccctcag cagatgataa tatcaagaca cctgccgagc gtctgcgggg gccgcttcca
     4741 ccctcagcgg atgataatct caagacacct tccgagcgtc agctcactcc ccttccaccc
     4801 tcagctccac cctcagcaga tgataatatc aagacacctg ccgagcgtct gcgggggccg
     4861 cttccaccct cagcggatga taatctcaag acaccttccg agcgtcagct cactcccctt
     4921 ccaccctcag ctccaccctc agcagatgat aatatcaaga cacctgccga gcgtctgcgg
     4981 ggagcgtctg cgggggccgc ttccaccctc agcggatgat aatctcaaga caccttccga
     5041 gcgtcagctc actccccttc caccctcagc tccaccctca gcagatgata atatcaagac
     5101 acctgccgag cgtctgcgga ggccgcttcc accctcagcg gatgataatc tcaagacacc
     5161 ttccgagcgt cagctcactc cccttccacc ctcagctcca ccctcagcag atgataatat
     5221 caagacacct gccgagcgtc tgcgggggcc gcttccaccc tcagcggatg ataatctcaa
     5281 gacaccttcc gagcgtcagc tcactcccct tccaccctca gctccaccct cagcagatga
     5341 taatatcaag acacctgccg agcgtctgcg ggggccgctt ccaccctcag cggatgataa
     5401 tctcaagaca ccttccgagc gtcagctcac tccccttcca ccctcagctc caccctcagc
     5461 agatgataat atcaagacac ctgccgagcg tctgcggggg ccgcttccac cctcagcgga
     5521 tgataatctc aagacacctt ccgagcgtca gctcactccc cttccaccct cagctccacc
     5581 ctcagcagat gataatatca agacacctgc cgagcgtctg cgggggccgc ttccaccctc
     5641 agcggatgat aatctcaaga caccttctga gcgtcagctc actccccttc caccctcagc
     5701 tccaccctca gcagatgata atatcaagac acctgccgag cgtctgcggg ggccgcttcc
     5761 accctcagcc gatgataatc tcaagacacc tcccttagct actcaggagg ctgaggcaga
     5821 aaaaccacgc aaacccaaga ggcagagggc ggctgagatg gaaccacctc ccgaacccaa
     5881 gaggcggagg gtcggtgacg tggaaccgtc acgcaaaccc aagaggcgga gggccgctga
     5941 cgtggaacca tcatcaccca aacccaagag gcggagggtc ggtgatgtgg aaccgtcacg
     6001 caaacccaag aggcggaggg ccgctgacgt ggaaccatca tcacccgaac ccaagaggcg
     6061 gagggtcggt gacgtggaac cgtcacgcaa acccaagagg cggagggccg ctgacgtgga
     6121 accatcatca cccgaaccca agaggcggag gttgagctga gaagaggcca gtgcactcaa
     6181 gcctgagcaa taagaataaa accgagtaga acaaaataaa aaattcaaaa aacaaaacaa
     6241 aacccacact ccaaaaacta acaaagaata aataaataat ataaaaataa aa
//
