LOCUS       NM_001395487            1747 bp    mRNA    linear   PRI 17-FEB-2024
DEFINITION  Homo sapiens nuclear pore complex interacting protein family member
            A3 (NPIPA3), transcript variant 1, mRNA.
ACCESSION   NM_001395487
VERSION     NM_001395487.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Hornan,D.M., Peirson,S.N., Hardcastle,A.J., Molday,R.S.,
            Cheetham,M.E. and Webster,A.R.
  TITLE     Novel retinal and cone photoreceptor transcripts revealed by human
            macular expression profiling
  JOURNAL   Invest Ophthalmol Vis Sci 48 (12), 5388-5396 (2007)
   PUBMED   18055785
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC009167.9 and AC136443.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189667.229283.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2155371
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000531598.7/ ENSP00000437133.1
            RefSeq Select criteria :: based on manual assertion
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-471               AC009167.9         17950-18420         c
            472-550             AC009167.9         13088-13166         c
            551-708             AC009167.9         12768-12925         c
            709-837             AC009167.9         5635-5763           c
            838-937             AC009167.9         1905-2004           c
            938-1082            AC009167.9         1597-1741           c
            1083-1190           AC136443.3         181381-181488       c
            1191-1251           AC136443.3         180302-180362       c
            1252-1287           AC136443.3         180157-180192       c
            1288-1747           AC136443.3         178338-178797       c
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16p13.11"
     gene            1..1747
                     /gene="NPIPA3"
                     /note="nuclear pore complex interacting protein family
                     member A3"
                     /db_xref="GeneID:642778"
                     /db_xref="HGNC:HGNC:41978"
     exon            1..471
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     exon            472..550
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     exon            551..708
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     CDS             589..1698
                     /gene="NPIPA3"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="nuclear pore complex-interacting protein family
                     member A3 isoform 1"
                     /protein_id="NP_001382416.1"
                     /db_xref="CCDS:CCDS92114.1"
                     /db_xref="GeneID:642778"
                     /db_xref="HGNC:HGNC:41978"
                     /translation="MVKLSIVLTPRFLSHDQGQLTKELQQHVKSVTCPCEYLRKVINT
                     LADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTD
                     VQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAKICKMKVTTKVNRHDKINGKRK
                     TAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYY
                     RCKITPSARKPLCNRVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSII
                     DNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTP
                     LPPSAPPSVDDNLKTPPKCVCSLPFHPQRMIISRN"
     exon            709..837
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     exon            838..937
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     exon            938..1082
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1190
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1251
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     exon            1252..1287
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
     exon            1288..1747
                     /gene="NPIPA3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agggcttcct ggctgcagtg gctgctgccc catcccaggg ccgcggggcc cgggttccac
       61 ttggcggcgt cttctctcga gtcgccttcg ctgctccgag aagtcggcgg cgcagcagtt
      121 gacgctcagc tcgccgcagg tcgccatatt ccccgcggag gccggctggg ctctcgcctc
      181 aggccgccca ccctgctccg gccgccgcgg cctctccgtt cccgcagcca gaggtgggga
      241 gagagcgacc tccaggcact gggcacccgc cgcttcccca gcagccggcg gggcgatgga
      301 gaaagacgcc aggaagcgga aggtccccgc cggcccgagg gtcgcccggg gctgcgcccc
      361 atggttcctg cccacggagc agctgccggg accctccctg ccaagttgct cccggaaaag
      421 ctctcaggtt ctcaggcctg cagggagtga cagtttcccc ctgactggaa cgtatgatct
      481 cgtgaaacct tgagagaaac tgaatgacga atgaaactat tgttcctgtt tcacacagaa
      541 gaaaactgag gttggcactc atcatgagcc cctgttctca ttctgcaaat ggtgaagctc
      601 tctattgtcc tgaccccacg gttcctgtcc catgaccagg gccagctcac caaggagctg
      661 cagcagcacg taaagtcagt gacatgccca tgcgagtacc tgaggaaggt tatcaatact
      721 ctggctgacc atcgtcatcg tgggactgac tttggtggaa gtccttggtt acttatcatt
      781 actgtgtttc tgagaagtta taaatttgcc atctccctct gcacaagtta cctttgtgtg
      841 tctttcctga agactatctt cccgtctcaa aatggacatg atggatccac ggatgtacag
      901 cagagagcca ggaggtccaa ccgccgtaga caggaaggaa ttaaaattgt cctggaagac
      961 atctttactt tatggagaca ggtggaaacc aaagttcgag ctaaaatctg taagatgaag
     1021 gtgacaacaa aagtcaaccg tcatgacaaa atcaatggaa agaggaagac cgccaaagaa
     1081 catctgagga aactaagcat gaaagaacgt gagcacggag aaaaggagag gcaggtgtca
     1141 gaggcagagg aaaacgggaa attggatatg aaagaaatac acacctacat ggaaatgttt
     1201 caacgtgcgc aagcgttgcg gcggcgggca gaggactact acagatgcaa aatcacccct
     1261 tctgcaagaa agcctctttg caaccgggtc agaatggcgg cagcggagca tcgtcattct
     1321 tcaggattgc cctactggcc ctacctcaca gctgaaactt taaaaaacag gatgggccac
     1381 cagccacctc ctccaactca acaacattct ataattgata actccctgag cctcaagaca
     1441 cctcccgagt gtctgctcac tccccttcca ccctcagctc taccctcagc ggatgataat
     1501 ctcaagacac ctgcggagtg tctgctctat ccccttccac cctcagcgga tgataatctc
     1561 aagacacctc ccgagtgtct gctcactccc cttccaccct cagctccacc ctcagtggat
     1621 gataatctca agacacctcc caagtgtgtc tgctcactcc ccttccaccc tcagcggatg
     1681 ataatctcaa gaaactaagg aagaataaat aaataatata aaaataaaat gaatactgca
     1741 gtcctta
//
