LOCUS       NM_001395485            1509 bp    mRNA    linear   PRI 17-FEB-2024
DEFINITION  Homo sapiens nuclear pore complex interacting protein family member
            A2 (NPIPA2), transcript variant 1, mRNA.
ACCESSION   NM_001395485
VERSION     NM_001395485.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Hornan,D.M., Peirson,S.N., Hardcastle,A.J., Molday,R.S.,
            Cheetham,M.E. and Webster,A.R.
  TITLE     Novel retinal and cone photoreceptor transcripts revealed by human
            macular expression profiling
  JOURNAL   Invest Ophthalmol Vis Sci 48 (12), 5388-5396 (2007)
   PUBMED   18055785
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC136443.3.
            
            On Jul 9, 2021 this sequence version replaced NM_001395485.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189667.131193.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2158188
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000529166.6/ ENSP00000432029.1
            RefSeq Select criteria :: based on manual assertion, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-233               AC136443.3         161915-162147       c
            234-312             AC136443.3         156815-156893       c
            313-470             AC136443.3         156495-156652       c
            471-599             AC136443.3         149360-149488       c
            600-699             AC136443.3         145634-145733       c
            700-844             AC136443.3         145326-145470       c
            845-952             AC136443.3         142261-142368       c
            953-1013            AC136443.3         141182-141242       c
            1014-1049           AC136443.3         141037-141072       c
            1050-1509           AC136443.3         139218-139677       c
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
                     /map="16p13.11"
     gene            1..1509
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /note="nuclear pore complex interacting protein family
                     member A2"
                     /db_xref="GeneID:642799"
                     /db_xref="HGNC:HGNC:41979"
     exon            1..233
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     exon            234..312
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     exon            313..470
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     CDS             351..1460
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     Nuclear pore complex-interacting protein family member A1"
                     /codon_start=1
                     /product="nuclear pore complex-interacting protein family
                     member A2 isoform 1"
                     /protein_id="NP_001382414.1"
                     /db_xref="CCDS:CCDS92115.1"
                     /db_xref="GeneID:642799"
                     /db_xref="HGNC:HGNC:41979"
                     /translation="MVKLSIVLTPRFLSHDQGQLTKELQQHVKSVTCPCEYLRKVINT
                     LADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTD
                     VQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAKICKMKVTTKVNRHDKINGKRK
                     TAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYY
                     RCKITPSARKPLCNRVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSII
                     DNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTP
                     LPPSAPPSADDNLKTPPKCVCSLPFHPQRMIISRN"
     exon            471..599
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     exon            600..699
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     exon            700..844
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     exon            845..952
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1013
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1049
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1509
                     /gene="NPIPA2"
                     /gene_synonym="NPIP; NPIPA1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agggcttcct ggctgcagtg gctgctgccc catcccaggg ccgcggggcc cgggttccac
       61 ttggcggcgt cttctctcga gtcgccttcg ctgctccgag aagtcggcgg cgcagcagtt
      121 gacgctcagc tcgccgcagg tcgccatatt ccccgcggag gccggctggg ctctcgcctc
      181 aggccgccca ccctgctccg gccgccgcgg cctctccgtt cccgcagcca gaggtatgat
      241 ctcgtgaaac cttgagagaa actgaatgac gaatgaaact attgttcctg tttcacacag
      301 aagaaaactg aggttggcac tcatcatgag cccctgttct cattctgcaa atggtgaagc
      361 tctctattgt cctgacccca cggttcctgt cccatgacca gggccagctc accaaggagc
      421 tgcagcagca cgtaaagtca gtgacatgcc catgcgagta cctgaggaag gttatcaata
      481 ctctggctga ccatcgtcat cgtgggactg actttggtgg aagtccttgg ttacttatca
      541 ttactgtgtt tctgagaagt tataaatttg ccatctccct ctgcacaagt tacctttgtg
      601 tgtctttcct gaagactatc ttcccgtctc aaaatggaca tgatggatcc acggatgtac
      661 agcagagagc caggaggtcc aaccgccgta gacaggaagg aattaaaatt gtcctggaag
      721 acatctttac tttatggaga caggtggaaa ccaaagttcg agctaaaatc tgtaagatga
      781 aggtgacaac aaaagtcaac cgtcatgaca aaatcaatgg aaagaggaag accgccaaag
      841 aacatctgag gaaactaagc atgaaagaac gtgagcacgg agaaaaggag aggcaggtgt
      901 cagaggcaga ggaaaacggg aaattggata tgaaagaaat acacacctac atggaaatgt
      961 ttcaacgtgc gcaagcgttg cggcggcggg cagaggacta ctacagatgc aaaatcaccc
     1021 cttctgcaag aaagcctctt tgcaaccggg tcagaatggc ggcagcggag catcgtcatt
     1081 cttcaggatt gccctactgg ccctacctca cagctgaaac tttaaaaaac aggatgggcc
     1141 accagccacc tcctccaact caacaacatt ctataattga taactccctg agcctcaaga
     1201 cacctcccga gtgtctgctc actccccttc caccctcagc tctaccctca gcggatgata
     1261 atctcaagac acctgcggag tgtctgctct atccccttcc accctcagcg gatgataatc
     1321 tcaagacacc tcccgagtgt ctgctcactc cccttccacc ctcagctcca ccctcagcgg
     1381 atgataatct caagacacct cccaagtgtg tctgctcact ccccttccac cctcagcgga
     1441 tgataatctc aagaaactaa ggaagaataa ataaataata taaaaataaa atgaatactg
     1501 cagtcctta
//
