LOCUS       XM_006712552            1530 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens nephrocystin 1 (NPHP1), transcript variant
            X5, mRNA.
ACCESSION   XM_006712552
VERSION     XM_006712552.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000002.12) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_006712552.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
     gene            1..1530
                     /gene="NPHP1"
                     /gene_synonym="JBTS4; NPH1; SLSN1"
                     /note="nephrocystin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 25 ESTs, 31 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:4867"
                     /db_xref="HGNC:HGNC:7905"
                     /db_xref="MIM:607100"
     CDS             46..1443
                     /gene="NPHP1"
                     /gene_synonym="JBTS4; NPH1; SLSN1"
                     /codon_start=1
                     /product="nephrocystin-1 isoform X5"
                     /protein_id="XP_006712615.1"
                     /db_xref="GeneID:4867"
                     /db_xref="HGNC:HGNC:7905"
                     /db_xref="MIM:607100"
                     /translation="MLARRQRDPLQALRRRNQELKQQVDSLLSESQLKEALEPNKRQH
                     IYQRCIQLKQAIDENKNALQKLSKADESAPVANYNQRKEEEHTLLDKLTQQLQGLAVT
                     ISRENITEVGAPTEEEEESESEDSEDSGGEEEDAEEEEEEKEENESHKWSTGEEYIAV
                     GDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSEEEEGQE
                     SSEEGSEEDVEAVDETADGAEVKQRTDPHWSAVQKAISEAGIFCLVNHVSFCYLIVLM
                     RNRMETVEDTNGSETGFRAWNVQSRGRIFLVSKPVLQQINTVDVLTTMGAIPAGFRPS
                     TLSQLLEEGNQFRANYFLQPELMPSQLAFRDLMWDATEGTIRSRPSRISLILTLWSCK
                     MIPLPGMSIQVLSRHVRLCLFDGNKVLSNIHTVRATWQPKKPKTWTFSPQIKSGMTPE
                     GLLHYTHTLSRLEWH"
ORIGIN      
        1 ggtttccctg gcaactggag caatcagagc accgcagcca gggagatgct ggcgagacga
       61 cagcgagatc ctctccaggc cctgcggcgc cgcaatcagg agctgaagca acaggttgat
      121 agtttgcttt ctgagagcca actgaaagaa gctctagaac ccaataaaag acaacatatt
      181 tatcaaagat gtatccagtt aaagcaggca atagatgaaa ataaaaatgc tcttcaaaaa
      241 ttaagcaaag ctgatgaatc tgcacctgtt gcaaactata atcagagaaa agaagaggag
      301 catactcttt tggacaagct tacccaacaa ctgcagggcc ttgctgtgac aataagcaga
      361 gaaaatataa ctgaagttgg ggcacctact gaagaagagg aagaaagtga aagtgaagat
      421 agtgaagaca gtggtgggga ggaagaagat gcagaggagg aagaggaaga gaaagaggaa
      481 aatgaatctc acaaatggtc aaccggtgaa gaatacatcg ctgttggaga ttttactgct
      541 cagcaagttg gagatcttac atttaagaaa ggggaaattc tccttgtaat tgaaaaaaaa
      601 cctgatggtt ggtggatagc taaggatgcc aaaggaaatg aaggtcttgt tcccagaacc
      661 tacctagagc cttatagtga agaagaagaa ggccaagagt caagtgaaga gggcagtgaa
      721 gaagatgtag aggcggtgga tgaaacagca gatggagcag aagttaagca aagaactgat
      781 ccccactgga gtgctgttca gaaagcgatt tcagaggcgg gcatcttctg tcttgttaat
      841 catgtctcgt tttgctacct aatagttctg atgcgaaata ggatggagac tgtggaagac
      901 accaatggat ctgaaacagg gttcagggca tggaatgtac agagcagagg acgtatattt
      961 ctggtttcta agcctgtgct ccaacagata aacactgttg atgtgttaac tacgatggga
     1021 gctattcctg cagggttcag gccttccacg ctctcacagc ttctggagga agggaatcaa
     1081 tttcgagcaa attacttctt acaaccagag ctcatgcctt cacaactggc cttcagagat
     1141 ctgatgtggg atgctacaga aggcactatt aggtcgagac caagtcgtat ttcattgatt
     1201 ctgacattat ggagctgtaa aatgattcct cttccaggaa tgagcataca ggttctcagc
     1261 agacatgtac gcctctgtct atttgatggt aataaggttc tgagcaacat tcatacagtc
     1321 agagccacat ggcaacctaa aaagcccaaa acatggacct tttctcccca gataaagtca
     1381 gggatgacgc ctgagggact gctacattac acccacacac tgtcaagact ggaatggcat
     1441 taggttactc gcatcttacc atgtttgctt gatggtgatt gctttatcag gtctaattct
     1501 gcatctccag atcttggaat attatttgaa
//
