LOCUS       XM_047416050            4230 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens NK3 homeobox 2 (NKX3-2), transcript variant
            X1, mRNA.
ACCESSION   XM_047416050
VERSION     XM_047416050.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000004.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4230
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="4"
     gene            1..4230
                     /gene="NKX3-2"
                     /gene_synonym="BAPX1; NKX3.2; NKX3B; SMMD"
                     /note="NK3 homeobox 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 2 ESTs, 27 long
                     SRA reads, 4 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:579"
                     /db_xref="HGNC:HGNC:951"
                     /db_xref="MIM:602183"
     CDS             2066..3067
                     /gene="NKX3-2"
                     /gene_synonym="BAPX1; NKX3.2; NKX3B; SMMD"
                     /codon_start=1
                     /product="homeobox protein Nkx-3.2 isoform X1"
                     /protein_id="XP_047272006.1"
                     /db_xref="GeneID:579"
                     /db_xref="HGNC:HGNC:951"
                     /db_xref="MIM:602183"
                     /translation="MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVA
                     AAPAVCCWRLFGERDAGALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENE
                     SRRRCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSP
                     RTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQV
                     FELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPA
                     AKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ"
ORIGIN      
        1 gcagtcaaat cccgctctcc gcccgccgcc cgcggaagtc tcaccgcgca gcagcacccc
       61 cagcccgggc ggttccgggg accgaagggc gcggcacgta gggggcccgt aggatccaaa
      121 ctgcggagga gaagcaggag gagggaggag gaagaagaca aaggtaccct acaaggtttg
      181 cacaaagcaa gaaagcatca tgtaaccgaa atgctgaaaa gtatagatgc tgcaaaacct
      241 cattctgaga ctgagaacta tgaatagtca gtgtatttcc ttctgcggtg cagaaaaaga
      301 acaaccaaaa agaaagcaac aaggggagat gttatttatt ttaatgacac caaaactacc
      361 aatcctagca atttaataaa ttaaaatcat agtcctttaa atgtatttaa tggttcaagt
      421 ttgtgtattt ggtgttaact ctctggtaaa gtttatggaa aacagtgaag tacgttaatt
      481 gagcaaattt tatattaaaa aaggaataac acattttaaa atgtttttat atacccacaa
      541 tatttgtgtt tcttagcttg gttcctacta ttacataata caatgcattt cttatttttt
      601 aaagagcaaa aagtgttgtc acttctggat cactttatgg taattcctag gtatacttct
      661 aagcaaacaa acatatctat ttataatttt attcaactca caagtaagag atatttaaaa
      721 aaaacaaatt gaaagttttt tttttcttcc tgatgcaaaa cttaacaaac tccaattaaa
      781 ttcaatattg gtctgccagg gaaacgacca taaaatttac agaaattctc ccaaagatgc
      841 ctttcaattc ttctcctgac tttagttcta actataccat ttttttataa ttcctctata
      901 aaaatcgaat caaatcaaag acgacgagga aagaaaaata tttctagagt gatcttaatt
      961 aactgatcat ttcagcaaag agcattagca atgaagaagc ggcgaaactg tagggagaaa
     1021 aaaaaggatg cattttgttc ttcgtgttta taatccttcc tagagaacag aaactacgag
     1081 catgatttat ggaactgcat tatcttggat tttctccgca gatttgactc aacttagtat
     1141 cagtgttctg ttaaagcgct ggaataagtg gatacatctg cagaggtaag aaacgtggtt
     1201 tgggtcggat gagcctcctt gttgctggag ggtgcttcga ggaccaggct taggagagaa
     1261 ggggttaagt cagaccctgt ctttagcggc gcaacgtgcc cagttttgtc tgttaaagtc
     1321 aacgtcgccc aactggagcc agccaatgga cggccgggag cgcccgggac agcccagtgg
     1381 aggggtgtgg cctcaggctg tcactcagca gtgaggaatg acacccgggc gggagggggg
     1441 tggtacagtg gaacgcaagg gaaggaaaga gaaaagaaac agataaaacc agggcagggg
     1501 gtaaaaaagt tccccgcgcc tctcggaatc cagcggccgc ggccgcggct accgccgccg
     1561 ccgccggggg tgggctccgg aagagcctgc ccagcaggga aggggaggac gggccaggag
     1621 cgaaatcctg caggcgagga agggacagac gcgcaaagaa aaagtgactc gggctgtgcg
     1681 ccccggcggc gctcgggagg ggactgctgc cacggagggg cccccgccaa tcctccttca
     1741 cgtcccccga gggggcagac cccagcccgc ccctaagggc gagaagcgat gagataatcc
     1801 agctgagctg cgaaaggaga gcgtctggct ctggattcgg ggggaggggg tctccgggcg
     1861 gggtgggcct ctaaggtggg ggcgagggtc ggcgctgatc ctgggacgga gtggggcggg
     1921 agctgctggg ccgcgcagca gtgggcggcg gcggcctcgc acacccagct cactcgcgct
     1981 gcggccgccg gcgctctctg tcccgctcgg agctgctcgg cgccccagct gcccgccccg
     2041 ccggccgctc ctgcccgcgg cgcagatggc tgtgcgcggc gccaacacct tgacgtcctt
     2101 ctccatccag gcgatcctca acaagaaaga ggagcgcggc gggctggccg cgccagaggg
     2161 gcgcccggcg cccgggggca cagcggcatc ggtggccgcg gctcccgctg tctgctgttg
     2221 gcggctcttt ggggagaggg acgcgggcgc gttggggggc gccgaggact ctctgctggc
     2281 gtctcctgcc ggtaccagaa cagctgcggg gcggactgcg gagagcccgg aaggctggga
     2341 ctcggactcc gcgctcagcg aggagaacga gagcaggcgg cgctgcgcgg acgcgcgggg
     2401 ggccagcggg gccggccttg cggggggatc cttgagcctc ggccagccgg tctgtgagct
     2461 ggccgcttcc aaagacctag aggaggaagc cgcgggccgg agcgacagcg agatgtccgc
     2521 cagcgtctca ggcgaccgca gcccaaggac cgaggacgac ggtgttggcc ccagaggtgc
     2581 acacgtgtcc gcgctgtgca gcggggccgg cggcgggggc ggcagcgggc cggcaggcgt
     2641 cgcggaggag gaggaggagc cggcggcgcc caagccacgc aagaagcgct cgcgggccgc
     2701 tttctcccac gcgcaggtct tcgagctgga gcgccgcttt aaccaccagc gctacctgtc
     2761 cgggcccgag cgcgcagacc tggccgcgtc gctgaagctc accgagacgc aggtgaaaat
     2821 ctggttccag aaccgtcgct acaagacaaa gcgccggcag atggcagccg acctgctggc
     2881 ctcggcgccc gccgccaaga aggtggccgt aaaggtgctg gtgcgcgacg accagagaca
     2941 atacctgccc ggcgaagtgc tgcggccacc ctcgcttctg ccactgcagc cctcctacta
     3001 ttacccgtac tactgcctcc caggctgggc gctctccacc tgcgcagctg ccgcaggcac
     3061 ccagtgaacc cgcttgggct gaggcagcga gtgattcccg cgctccggct ccggaccggc
     3121 gctgacagct gtaggctgta gcctgcacgg ggcgccccgc caaggaggca cctggaggtg
     3181 aaacccagct ccagctcccg ttagccagga cttgtcccct ggcagctggg ctgagtctgc
     3241 cctgaggggg cgcctttttc taatttgaac agaggcaccc tatggcctag gggccctgat
     3301 cgcccacctg cctggaagcc cctgggctct atttattatc atgacaatgt tggaattaaa
     3361 ttttgattcg aatatgtctg cctgggggtg gggttttccc tgagcggcaa ctcctggaga
     3421 ccacatagcc tgaatcctca gaatttcagg cctgctggga gctttctgca ctaggccaca
     3481 ctagttcatg gtatccatgc taccaatcta tgtgtatcta catatctttt atttttggaa
     3541 attgcatttg taaccaaggg gtgcgaaacc ctggcagtcc caggcagcac caggccaggg
     3601 gttgatttga aacgtgaagg attgggtttt caggccctct gctccacccc tcctgtgtgt
     3661 cagagctagg gtgggggtgc ccgattcggg tgctgaatgt aaggagggga gcctccaagt
     3721 gtggtgcaag ccgggggtct ccacatcttc cttctctgaa gtccaggtac ctgcacaagc
     3781 aggaagcgcc tgggagtccc ggaaggagga gagcgcacac ccaggcagcc ctctgcggaa
     3841 actttccttg gtttcttttt atttgtgtaa aggaggttaa gacgtgtcgc acttttcagt
     3901 tgtttgtatt caaatgacga ttatttttct actcaatgtg aatatccctg gccagccttt
     3961 ccacggcgcc caccgcagtg ccgctgcctg gccctcagtg tctaccttct gccctctgcg
     4021 actccagtgc tctggcccgg gactccccta tccgcccctc acttaccctt aaacaggtga
     4081 tcccacctgt cttgtcaacc tcgccgcttt tcgcctcctt aatggcactg tgcactcaac
     4141 tagagtatta actgtaaaaa gatttgtgaa gtttggaagc tctattcgct gtattttttc
     4201 tttaatttat aaacttttag tttaacatgc
//
