LOCUS       NM_018376               5547 bp    mRNA    linear   PRI 19-SEP-2024
DEFINITION  Homo sapiens nipsnap homolog 3B (NIPSNAP3B), transcript variant 1,
            mRNA.
ACCESSION   NM_018376 NR_024011
VERSION     NM_018376.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 5547)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 5547)
  AUTHORS   Buechler,C., Bodzioch,M., Bared,S.M., Sigruener,A., Boettcher,A.,
            Lapicka-Bodzioch,K., Aslanidis,C., Duong,C.Q., Grandl,M.,
            Langmann,T., Dembinska-Kiec,A. and Schmitz,G.
  TITLE     Expression pattern and raft association of NIPSNAP3 and NIPSNAP4,
            highly homologous proteins encoded by genes in close proximity to
            the ATP-binding cassette transporter A1
  JOURNAL   Genomics 83 (6), 1116-1124 (2004)
   PUBMED   15177564
REFERENCE   3  (bases 1 to 5547)
  AUTHORS   Qiu,Y., Cavelier,L., Chiu,S., Yang,X., Rubin,E. and Cheng,J.F.
  TITLE     Human and mouse ABCA1 comparative sequencing and transgenesis
            studies revealing novel regulatory sequences
  JOURNAL   Genomics 73 (1), 66-76 (2001)
   PUBMED   11352567
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DA346124.1, BC017914.1, AL359846.11 and AF370389.1.
            
            On Nov 23, 2018 this sequence version replaced NM_018376.3.
            
            Summary: NIPSNAP3B belongs to a family of proteins with putative
            roles in vesicular trafficking (Buechler et al., 2004 [PubMed
            15177564]).[supplied by OMIM, Mar 2008].
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1803611.216063.1,
                                           SRR1660803.185865.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000374762.4/ ENSP00000363894.3
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-41                DA346124.1         389-429
            42-1365             BC017914.1         1-1324
            1366-4854           AL359846.11        170305-173793
            4855-5547           AF370389.1         1531-2223
FEATURES             Location/Qualifiers
     source          1..5547
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q31.1"
     gene            1..5547
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /note="nipsnap homolog 3B"
                     /db_xref="GeneID:55335"
                     /db_xref="HGNC:HGNC:23641"
                     /db_xref="MIM:608872"
     exon            1..172
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             113..856
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /codon_start=1
                     /product="protein NipSnap homolog 3B"
                     /protein_id="NP_060846.2"
                     /db_xref="CCDS:CCDS6761.1"
                     /db_xref="GeneID:55335"
                     /db_xref="HGNC:HGNC:23641"
                     /db_xref="MIM:608872"
                     /translation="MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYL
                     KPSNMNAFMENLKKNIHLRTSYSELVGFWSVEFGGRTNKVFHIWKYDNFAHRAEVRKA
                     LANCKEWQEQSIIPNLARIDKQETEITYLIPWSKLEKPPKEGVYELAVFQMKPGGPAL
                     WGDAFERAINAHVNLGYTKVVGVFHTEYGELNRVHVLWWNESADSRAAGRHKSHEDPR
                     VVAAVRESVNYLVSQQNMLLIPASFSPLK"
     exon            173..383
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /inference="alignment:Splign:2.1.0"
     exon            384..542
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /inference="alignment:Splign:2.1.0"
     exon            543..692
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /inference="alignment:Splign:2.1.0"
     exon            693..779
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /inference="alignment:Splign:2.1.0"
     exon            780..5547
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5528..5533
                     /regulatory_class="polyA_signal_sequence"
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /note="hexamer: AATAAA"
     polyA_site      5547
                     /gene="NIPSNAP3B"
                     /gene_synonym="FP944; NIPSNAP3; SNAP1"
                     /note="major polyA site"
ORIGIN      
        1 cctgcctgag ttcgccagtg gtccaggagc cgcttttttc cactcgggaa gacttcagag
       61 aagtctcaca aaggactcgg ctggctgctt ttctcagtgc cgaagccgcg ccatgctcgt
      121 tctcagaagc ggcctgacca aggcgcttgc ctcacggacg ctcgcgcctc aggtgtgttc
      181 atcttttgct acgggcccta gacaatacga tggaacgttc tatgaatttc gtacttatta
      241 ccttaaacct tcaaatatga atgcgttcat ggaaaatctt aagaaaaaca ttcatcttcg
      301 gacctcttac tctgaattgg ttggattctg gagtgtagaa tttggaggca gaacgaataa
      361 agtgtttcat atttggaagt atgataattt tgctcatcga gctgaagttc ggaaagcctt
      421 agccaactgt aaggaatggc aagaacaatc tatcattcca aatttggctc gcattgataa
      481 acaagagacg gaaattactt acctgatacc atggtccaaa ttagaaaagc ctccaaaaga
      541 aggagtctat gaactagctg tttttcagat gaaacctggt gggccagctc tgtggggtga
      601 tgcatttgaa agagcaatta atgcccatgt caatttaggc tacacaaaag tagttggtgt
      661 tttccacaca gaatatggag aactcaacag agttcatgtt ctttggtgga atgagagtgc
      721 agatagtcgt gcagctggga gacataagtc ccatgaggat cccagagttg tggcggctgt
      781 tcgggaaagt gtcaactacc tagtttctca gcagaatatg cttctgattc ctgcatcatt
      841 ttcaccattg aaatagtttt ctactgaaat acaaaacatt tcattaactg ctctaagatg
      901 tgtctgctaa tggtgcttaa attctcccaa gaggttctcg cttttatttg aaggaggtgg
      961 taagttaatt agttaatttg ctgtgcttct tgcatttttg aaagttacat attctccact
     1021 gctttaagaa ataattcagt tcactttcac cttggcattt cagtatctgt tacacattag
     1081 aagtagttgt cactatttca tcatcttggt ttttcatttg ttttagaata cctcttctgt
     1141 attttgataa ctcattgctt tatagcattt tcttttactc aaataaggat tttacatttc
     1201 cttgcctgac agtatttttg aattatttat ataaaatatc tatcttttca tcatgtctat
     1261 agttcctgag attttaaaaa aatttgctta gtaaaggtta ttttgtgata taaaatggga
     1321 tttataaaaa tattagattg tttatttctt tactgtggaa aagtacaatg tcatctgtat
     1381 taattattgc ttttacattc attgattatt agtcattcta acttggaaaa taatgcaatt
     1441 gggtcacagt gttaaaaatc tagaaaagac ttgttggttt atatgctgaa attgttcatt
     1501 tataattaat tttactaatt tctacttagt ttggatcact aacagagatc ttgggacatt
     1561 tatttgtttt aaagaaatat ttatggttat ggaaacgctt gccctaataa aaatcctgca
     1621 tattcattgt ttttttaaat tcacatttta tacttatatg atctctaaag ctcttgctat
     1681 gttgctataa gacagtaata tagtgataat ttaccaactt tattgaaaat gttgttacat
     1741 caataaaata gcatgctggg aacctgagaa ggaaggtttc tttagtactg ccacagatgt
     1801 cctggagttt tccttgaaac atctttcatt tccattttac ttgatgcctc tacctactaa
     1861 aactagattt ggtacttccg atagtgtata tttacagcta tattatattt acatttttac
     1921 agactatctt ctgataatct gtatttacag ctatgttatt ttatattttt aaaatcttac
     1981 agctataaaa tagtaaattg tgaattagct gtccaagggc aatttggaaa acaaactgta
     2041 cagtttcctc tcatttatca ggctctaagc gatctgcagt ttatctgggc tattatgcaa
     2101 tgtgagatat tatttatgag aggcaggcag tggcagctta aacagacata cctcctcagc
     2161 attcttttcc atgcagagtt caaagaggcc taagacatct cacatttatg tgaaatagtt
     2221 gaggcacaag tatgtggtta actacacata aattaccaat aaaattaaaa gttaactaaa
     2281 atactacaga agacatttaa tattttgctt cagactgtta tagtacctta gggttatgaa
     2341 catcaattac ctttgagcct tactatattt aaagggaagg ggaagctgac atttttatct
     2401 tttttaatgg gtacactcta cgttacctta aaggcttccc cggtttaagc aaaaatagaa
     2461 ttatgtggtt taaatcatat accttattct tcatacttag ctccaagtag attatgactt
     2521 ttcctaaaac ttaacatgac agagatttgc cttccagggg gtctaatttg aagaggaaag
     2581 taatttaaat gtataggttt atataatagc attgtatttt tctctatttt attcattctt
     2641 tcattctctt cgatgactcc cagcacctgc gcgtccatct tcattcttag ccaatgacct
     2701 ttccttttac ttaacagaga aaataacaat cagaagagtc ttcataagtt cccaccccgt
     2761 ctgcccgctt tctacagcca accccacatg ccctgccttc tctcctttca ctgtggatga
     2821 accgcccgtg ccccaagcaa agacaaaccc tccacttgaa cactcacttg ctgaaggatg
     2881 tggcttaggc agttttcctg tctcctgaag ccacagtatt ccccttcaac tggattcttc
     2941 tcctcagcat ataaatatac ttttttttcc tatctttaaa aaaaaaaaag agtaaaatca
     3001 ccccattttt ttcctttaca atatgactca aaagagtagt tcatacttcc tgcctccatt
     3061 ttcttccctc acattatctc ttaaacattc tctgatcacg ccagccaaat tgctcttgtc
     3121 aactcatttc ccagttctca tttcacttga cttgttagca gttgacctct cctttcttct
     3181 gggaagtttc ttcgtttctc cgaaacactc actgcacaag ccttcatatc tcctagtctc
     3241 catcttgtct ctttgacctc tgatgtaagg actgagtcct tggaccactt ctcttttcta
     3301 tttatactta ctccctgcgt catcaccccc agtcttgtgg cttcaaatgc tatctgtgtg
     3361 tggatagctc ctccagtcca cacctctttt ctgaatcttt tttcaaattc acacatgtga
     3421 atttgaattc caggctcatc acatccaggt gtgttcccca cacctccacc tgaatgtcta
     3481 ttagaaatct cacacccctc ttgtccaaaa ctgagctctt gatctttaac cagaaacttt
     3541 atctcagcta ttggcaactc caggtttctg ttttgctcag gccacagact tcagagtcat
     3601 tctcacactg ccttttctct catacaccat tatgtacctg tcagcaggtc ccaaatatct
     3661 agaatttgat tgcttcacat ccctatagca actctcctgg ttcaagccca tcatcatctg
     3721 gatttttggg aagtggtctt aactggtgtg ctgcccttcc cctctgctct caaccctatt
     3781 ttcaacatag cagtcagaat aatctaaaat ataaaccaga tcatatcact cctctgctca
     3841 acaccccctc ccaatacctt catgtcatcc tcagagttat tgtccaagcc tctaactgtg
     3901 gtctacaagt ctttacatga tctgtcctgt tacattttcc actctcgctc cagacctgac
     3961 ctaagaggct tttctctgaa cttgctaaac atgctcttac ctgagggtcc attcccactg
     4021 cctctgcctg gaatgctctt ccccagacat gcatctgcgt ggatcatttc catgcctcct
     4081 caggtctttg ccctcatgaa gccttccctg acaaccctat ttaagattgt aatcccctcc
     4141 cacagtggcc cctatctgct agagactgaa tgtttttgtc cccccaaaat tcctatgttg
     4201 aagccttaat ctcaacatag gaggtttggc ctttgtgagt tagttttaga tgaggtcatg
     4261 tgggtaatag aattagtgca tttataaggg cgtgaagagc cctcactgtg aggaaaccag
     4321 aatgtaagcc ttcaccagaa cttcttcatg ctggcaccct ggtcttagac ttcccagcca
     4381 ctagatctgt gagaaagaaa tgtttgttgt ttaagccacc ctgtctatgg tactcttgtt
     4441 acagcaacct gaactaagac actatccctc tcccctgctt tctttttctg ttatcaccat
     4501 aattaatgtt ttacttatat atgatttgtt aatgtatgtc tcttcccact agaaaccgaa
     4561 ttctatgaca gcaagggttt ttgttttcat tattgtcata ttacctgtgc ctggcatgtg
     4621 ataagcccta agtacttgtt gactgaatta acatatgaga tctgtgagtc tgaaaaaaga
     4681 agtacatcat tccttcacat gtcattttga gccactgtta acagattaca taactgttat
     4741 tggaagtgcc tcactactcc atttggaaag tattcctgga atacacgatg aatgactcag
     4801 tagaagttct ggctatgggg gagtgccatc aataaataaa aataatacca ttgtctgttg
     4861 gttataagtt gctgtcacag actatgaagg tatttgaatt gtattttcag gaagagaaac
     4921 agatatgcaa ccaatctgat ttggttccac accctgccac agaagtccca aaggagaagc
     4981 aaatgccact tgtagactca aactctggac ttcattctca gcaccatctc ttaacctact
     5041 gagtaaatcc tatgaacctg actagggtgg caactgaagt tgtagtactt tctgtcttca
     5101 aaggagggtg aacctggagt atgttggaag aagtgttagg ttcattagag acacctcttt
     5161 cataactgct gtcacctaga atgtctattc tctaagcacc ttcttgaaag aagcacattc
     5221 ccccaggagg aggaaatggt ttgttttctt tagtgacagt tggcccagga tcctaaggta
     5281 aaggagtatg ggcactagac aaaatgagtt ttataatagt cgattggaag gaatggaagt
     5341 ttttgaatca caggcttctg ccttgaaagg gcaagtccgt ggtggtcatg aaccacccag
     5401 agtgtgtaca aggctcctgc cagaagaaat gcctgtagga ttaaaagcaa aacagcagaa
     5461 tcaaaaagga agggcacgat gatgcccagg tgcagcctat attattaaca gacaaggaaa
     5521 gaatccaaat aaaagttctg taaacca
//
