LOCUS       NM_015469               1636 bp    mRNA    linear   PRI 19-SEP-2024
DEFINITION  Homo sapiens nipsnap homolog 3A (NIPSNAP3A), transcript variant 1,
            mRNA.
ACCESSION   NM_015469
VERSION     NM_015469.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   Buechler,C., Bodzioch,M., Bared,S.M., Sigruener,A., Boettcher,A.,
            Lapicka-Bodzioch,K., Aslanidis,C., Duong,C.Q., Grandl,M.,
            Langmann,T., Dembinska-Kiec,A. and Schmitz,G.
  TITLE     Expression pattern and raft association of NIPSNAP3 and NIPSNAP4,
            highly homologous proteins encoded by genes in close proximity to
            the ATP-binding cassette transporter A1
  JOURNAL   Genomics 83 (6), 1116-1124 (2004)
   PUBMED   15177564
REFERENCE   3  (bases 1 to 1636)
  AUTHORS   Lee,A.H., Zareei,M.P. and Daefler,S.
  TITLE     Identification of a NIPSNAP homologue as host cell target for
            Salmonella virulence protein SpiC
  JOURNAL   Cell Microbiol 4 (11), 739-750 (2002)
   PUBMED   12427096
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            HY046409.1 and BC005935.1.
            
            On Nov 22, 2018 this sequence version replaced NM_015469.2.
            
            Summary: NIPSNAP3A belongs to a family of proteins with putative
            roles in vesicular transport (Buechler et al., 2004 [PubMed
            15177564]).[supplied by OMIM, Mar 2008].
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR3476690.934110.1,
                                           SRR3476690.542599.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1966682
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000374767.5/ ENSP00000363899.4
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 HY046409.1         117-121
            6-1636              BC005935.1         1-1631
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q31.1"
     gene            1..1636
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /note="nipsnap homolog 3A"
                     /db_xref="GeneID:25934"
                     /db_xref="HGNC:HGNC:23619"
                     /db_xref="MIM:608871"
     exon            1..170
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /inference="alignment:Splign:2.1.0"
     CDS             111..854
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein NipSnap homolog 3A; protein NipSnap homolog 4;
                     target for Salmonella secreted protein C"
                     /codon_start=1
                     /product="protein NipSnap homolog 3A isoform 1"
                     /protein_id="NP_056284.1"
                     /db_xref="CCDS:CCDS6760.1"
                     /db_xref="GeneID:25934"
                     /db_xref="HGNC:HGNC:23619"
                     /db_xref="MIM:608871"
                     /translation="MLVLRSALTRALASRTLAPQMCSSFATGPRQYDGIFYEFRSYYL
                     KPSKMNEFLENFEKNAHLRTAHSELVGYWSVEFGGRMNTVFHIWKYDNFAHRTEVRKA
                     LAKDKEWQEQFLIPNLALIDKQESEITYLVPWCKLEKPPKEGVYELATFQMKPGGPAL
                     WGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNESADSRAAGRHKSHEDPR
                     VVAAVRESVNYLVSQQNMLLIPTSFSPLK"
     exon            171..381
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /inference="alignment:Splign:2.1.0"
     exon            382..540
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /inference="alignment:Splign:2.1.0"
     exon            541..690
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /inference="alignment:Splign:2.1.0"
     exon            691..777
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /inference="alignment:Splign:2.1.0"
     exon            778..1636
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1073..1078
                     /regulatory_class="polyA_signal_sequence"
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /note="hexamer: ATTAAA"
     polyA_site      1098
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
     regulatory      1618..1623
                     /regulatory_class="polyA_signal_sequence"
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /note="hexamer: AATAAA"
     polyA_site      1635
                     /gene="NIPSNAP3A"
                     /gene_synonym="HSPC299; NIPSNAP4; TASSC"
                     /note="major polyA site"
ORIGIN      
        1 agcctgcgtc tgccaatgat ccaggagccg ctcctttcca ctcgggaaac cttcagagga
       61 gtctcagaaa ggacacggct ggctgctttt ctcagcgccg aagccgcgcc atgctcgtcc
      121 tcagaagcgc cctgactcgg gcgctggcct cacggacgct ggcgcctcag atgtgctcat
      181 cttttgctac gggacccaga caatacgatg gaatattcta tgaatttcgt tcttattacc
      241 ttaagccctc aaagatgaat gagttcctgg aaaattttga gaaaaacgct catcttcgga
      301 cagctcactc tgaattggtt ggatactgga gtgtagaatt tggaggcaga atgaatacag
      361 tgtttcatat ttggaagtat gataattttg ctcatcgaac tgaagttcgg aaagccttgg
      421 ccaaagataa ggaatggcaa gaacaattcc tcattccaaa tttggctctc attgataaac
      481 aagagagtga gattacttat ctggtaccat ggtgcaaatt agaaaaacct ccaaaagaag
      541 gagtctatga actggccact tttcagatga aacctggtgg gccagctctg tggggtgatg
      601 catttaaaag ggcagttcat gctcatgtca atctaggcta cacaaaacta gttggagtgt
      661 tccacacaga gtacggagca ctcaacagag ttcatgttct ttggtggaat gagagtgcag
      721 atagtcgtgc agctgggaga cataagtccc atgaggatcc cagagttgtg gcagctgttc
      781 gggaaagtgt caactaccta gtatctcagc agaatatgct tctgattcct acatcgtttt
      841 caccactgaa atagttttct actgaaatac aaaacatttc attaactgct ataggatctg
      901 tctgctaatg gtgcttaaat tctcccaaga ggttctcact tttatttgaa ggaggtgtta
      961 agttaatttg ctatgtttct tgcattatga aggctacatc tgtgctttgt aagtaccact
     1021 tcaaaaaata gttctgttta ctttctgcat ggtatttcag tgtctgtcat acattaaaaa
     1081 tacttgtcac tgttttaaga tcttgactct tcatttgttt cagaatagct cttctactgt
     1141 attctgacaa ctctttgctt tatagcattt tgttgtattc aaatgataat ggtagcattt
     1201 ccatgcttgt gacagcattt ttaagttatt aatatatttt atcaaccttt ccatcatgtc
     1261 tgttttcctg gttttttttg gttgtttttt gaccagtaaa atttattttg taataccaaa
     1321 taggatttaa gaaaattaac gtatttcttt actatggaaa accacattgt catttgtgac
     1381 atcatctata ttaaatatgg ttttcacatt agttatttgt cacttacttg gaaaatgatg
     1441 ctgttaggtc ctggtattaa aaatctagaa aagacttgtt ggtttatgtg ctgaaatgtc
     1501 tttatttata attaatttta actactattt acttcatttc ggatcctgtt taacaaagat
     1561 acttgagaca tccatttgtt ttaatgaaat ctgtatggat atggaaatgc ttgccctaat
     1621 aaaagcctac atatac
//
