LOCUS       NM_001378600            4908 bp    mRNA    linear   PRI 04-AUG-2024
DEFINITION  Homo sapiens NFIL3 like basic leucine zipper (NFILZ), transcript
            variant 2, mRNA.
ACCESSION   NM_001378600
VERSION     NM_001378600.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4908)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC243312.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189667.229933.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000691075.1/ ENSP00000509575.1
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               AC243312.2         35788-35899
            113-262             AC243312.2         37631-37780
            263-359             AC243312.2         40805-40901
            360-409             AC243312.2         79706-79755
            410-507             AC243312.2         81514-81611
            508-4908            AC243312.2         81906-86306
FEATURES             Location/Qualifiers
     source          1..4908
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19p13.2"
     gene            1..4908
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /note="NFIL3 like basic leucine zipper"
                     /db_xref="GeneID:105372267"
                     /db_xref="HGNC:HGNC:52681"
     exon            1..112
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /inference="alignment:Splign:2.1.0"
     exon            113..262
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /inference="alignment:Splign:2.1.0"
     exon            263..359
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /inference="alignment:Splign:2.1.0"
     exon            360..409
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /inference="alignment:Splign:2.1.0"
     exon            410..507
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /inference="alignment:Splign:2.1.0"
     exon            508..4908
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /inference="alignment:Splign:2.1.0"
     CDS             523..1392
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /note="nuclear factor interleukin-3-regulated
                     protein-like; long intergenic non-protein coding RNA 1862"
                     /codon_start=1
                     /product="NFIL3 like protein"
                     /protein_id="NP_001365529.1"
                     /db_xref="CCDS:CCDS92505.1"
                     /db_xref="GeneID:105372267"
                     /db_xref="HGNC:HGNC:52681"
                     /translation="MDVGFSGLPDVSQSHSKTLWGARGRGPSIRRQREFMPEEKKDTV
                     YWEKRRKNNEAAKRSREKRRLNDAAIEGRLAALMEENALLKGELKALKLRFGLLPLTG
                     GPRALPLQALLLEAPWTGDPRPGAEALSSLSGSHSCLLRPRSLDAGIPGCRGCLLAPR
                     WTGLATSPRSPQESASPTLNRIDMALQTALPPALFSCHLLEGHVGSRPELRPCWGLWS
                     PVPSGCRASGPSDVLLTPTADPMGLSPGVTCPAPGNSPEGLGQPSLPHKLRIKSRASG
                     RVPRGWEGGQAPL"
     regulatory      4886..4891
                     /regulatory_class="polyA_signal_sequence"
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /note="hexamer: AATAAA"
     polyA_site      4908
                     /gene="NFILZ"
                     /gene_synonym="LINC01862"
                     /note="major polyA site"
ORIGIN      
        1 acagagttct ctgccatggc tggggactag gaagtgggaa agagctctag gggaacctga
       61 gggcttgggt ggaagactgg agagccagga ggagcaagga gcaggaagca agtaaagaag
      121 ccggcccaaa cccatcaaga ccaagatgat gacatgagtg acctctgatt gtcctcactg
      181 ctacactccc accagccccc tgacggttta cagatgccat ggcaacatca ggaagttacc
      241 ctctatgctc taaaaacggg agacacgtga gttgtttcca gttttggtga cgaatgccca
      301 aattcatagg cgatgataaa taatgtgcca gacgttgatg tgcaagtttt ggtgtgaggg
      361 atttctcaga gccttcaatg tactttgtga ttctcctata aggaataagg ttcagtcatc
      421 cttctgtctc cctctgggtt tccaagaatc ttaccttgga actccaattg aactgagccc
      481 tgggcttgtc tgctgacctt ctcaacagtt ctccaagcag ctatggatgt gggtttctcg
      541 ggcctgccag atgtgtctca gagtcatagc aagaccttgt ggggggctcg gggcaggggc
      601 ccctccatac gtcgccagcg ggagttcatg ccagaagaaa agaaggacac agtttactgg
      661 gagaagcgga ggaagaacaa tgaagcagcc aagagatcca gggaaaagcg acgtctcaat
      721 gatgcagcca ttgagggcag gctggctgca ctgatggagg agaatgccct gctcaagggt
      781 gagctgaagg cgctcaagct tcgctttggc ctcctgcccc tgactggtgg gccccgggcc
      841 ttgcccctgc aggctctgct attggaagcc ccctggactg gggacccccg gcctggggct
      901 gaagcactct catccttgtc tggctctcac agctgcctct taaggccacg ttccctggat
      961 gctgggattc caggatgtcg gggctgcctg ctggctccca gatggactgg cttggccact
     1021 tctcctaggt ccccccaaga gtctgcatct cctaccctca acagaattga catggccttg
     1081 cagactgccc tcccacctgc cctcttcagc tgtcacctct tggaggggca tgtagggtcc
     1141 agaccagagc tcagaccctg ctgggggctg tggtcaccag tgccctctgg atgccgggct
     1201 tcagggccat cagatgtgtt gctgacaccc actgctgatc ccatgggtct gtctcctggg
     1261 gtgacctgcc ctgccccagg gaacagtcct gagggtctgg gtcagccctc tctgccccac
     1321 aaactgcgca tcaagtcccg agcctcaggc agggtacctc gtggctggga gggtggtcag
     1381 gcgcccctct gagggcttcc tctgggaagg gctaggcttg caagggggtg tttgggggcg
     1441 gaatataggt ttgtctgagg gatgagtagc ttggtcttga tcagcaatct gggaaggcct
     1501 gtaggaagta ggggtgccct ggcttggaag gtccacttca cagcttccat accagacctc
     1561 ctaggggtgg agtggatggg agcccatctt ggattctacc atggctcttg ccttgcctta
     1621 aaatctatgc tttgggttgt cacttttccc tcttccttcc tcctttccat ttatctattc
     1681 ttccctatag ccatccattc atccattcat cctcatttat tcatccattc attcattcat
     1741 caatccttat ccatccatcc attagtccct ccatccttat ccatctatcc atccatccat
     1801 ccatccatcc acccatctat tcatccatcc atcaatccat ccatccattc catccatcca
     1861 tccatccatc catccatcca tccctccatc cattcatcca cttgtccgtc catccatcca
     1921 tccatccatc catccatcca tccatccgtc catctatcca tccatccatt catccatccg
     1981 tccatccatt cagccatcca tctgtccatt tatccatcct ccatttatcc atgcatctat
     2041 tctcattcat ccatgcattt gttcttcctt ctttctatct agccatccat tctcattcat
     2101 ccatgcattt gtttttcctt ctatctatcc atccatccat tcattcatcc acccatccac
     2161 ctatctatgc atgcatccat ccatcctcat ccactcatcc acccatcctc acctatccat
     2221 ccatccaccc attctttctt gcttctatcc attttcccat ccacacacct atccattcat
     2281 ccattcatac atcaatttat tctccatcca tccatccatc ctcatccatt cccattcatc
     2341 catccatcct gtcttccttc cttgcatcca ctcatcctca tccatttacc catccatcca
     2401 tccatcctca cccatccatc tacacatcct tcctttcatc cacccattca tctactcatc
     2461 cacccatcca tcctttcatt catttattca tttagccact catttatgtg ctaacttgtt
     2521 tattcattca ttctcttact cattaattta cttataattc acttgtcccc tcacccaccc
     2581 actcacgatc tttagacctt ccttttgtgc ccagttagtg acaagtgaga agacactttt
     2641 ctggtcttgg gtttcctgtc ctggggtagg aatgggtgtt tgggaagaaa catactgaag
     2701 accagactga aggaggaggt aacgtctagg gtgtctgaat cccccttctt ggtgtcccct
     2761 ggggggcttg cttaccaccc agtttgaggg gcagacatat tggcttcttc tgtgtcttgg
     2821 atcaggcctt gagctgctgg aacaggagca gctgtgtgag ggcatcagtg tcctctctct
     2881 ccctggctgc cccctgcccc tgagaaccag gtatacaccc acccaggtgg aagggtccat
     2941 tctgcaggga aggtcttcca ggggcctgga gcccaaggac ttatcaaggc tccctcctcc
     3001 tcagtttctc actcagcccc tctcccatta ttattattat tattattatt attattatta
     3061 ttacatcagg gatcttgtta gattctagat aaaaatactc aaactccaat catggggaga
     3121 gctcatggga tggggggctc atctggactg gtactgacac tgagaaccag atgcccctgg
     3181 ccaactggat cacttggact caggagcatc gcccaccccc accagatctg ggggctgggc
     3241 tagttcttgg ctactccaag tttatcagag ccacaaatgt gtgcagggtg aggacgtaca
     3301 aagtgcctct ctctcactag tacaacaggt gggcagtatc accaaacagg ccaagagctc
     3361 ccctgtgact gggcatccct agaatcctgc acatcacagg taggacctcc tctacttgct
     3421 cagcctttgg ttctggtcca gggcagggat tgggcaagat cagcccttct ccttccctcc
     3481 atgcctgacc ttccagcagg tggcttttct catgtcactg agcctccctt atacatctat
     3541 aaatgtttac ctataaatga gcccattccc tagaaatata ttgtgaatat taaataagag
     3601 gcagtaaata aattgcccgg tataggggct tctctggact gttttatctt cataaataat
     3661 gtgaatcctg gagggcaagg tggctcatgc ctgtaatcct agcactttgg gaggccaagg
     3721 cagatggatc tcacttgagg tcaggagttc gagaccagcc tggccaacat gatgaagccc
     3781 cgtctctagt aaaaatacaa aaattagccg ggcatggtag cgagcgcctg taatctcagc
     3841 tacttgggag gctgaggcat gaaaatcact tgaacccagg aggtggaggc tgcagcgagc
     3901 tgagattgca ccactgcagt ccagcctggg cgacagagcg agactccatc tgaaaaaaaa
     3961 aaaaaaaaaa aggaaaaaga aaaaatcctg tttccctttt tgctttgccc accaaggagc
     4021 tcagggccga gcttgtggct cagctataac agcattttca ttcattcatt cattcattca
     4081 ttcatttttt aattcatttg cttatttagc aaattttctt gatcataagt ttctcattgt
     4141 ttcattttat tcaaggcatg ttttgttgta aaaagtctga aaatcatatg cagccgagtt
     4201 ggcagtcttt tcttttgtgg tttgtacatt tttgtcatgt ttaagacaac ttccatgtct
     4261 caagatcata aagatagtct cctatcttta tgttccaggt actggggaaa gagaagtgaa
     4321 cacaatagat gtgattcctg cctctatggt actgataacc cagggaagga gatagattaa
     4381 aaaataagaa aaacatatag taggatcaat gatgatacgt gtcatggaga aaaaagggag
     4441 gcttgggaaa ggtaggtgtg ggtgcgttgt aataattgaa atagggagat caggattgaa
     4501 atagggggat ctcagccttg ctgagaaagt gacatttgaa cagagacttg agagagatga
     4561 aggggggagt catgcatgta tcagaggaag aacatttcct agtcagaaag aacagcctgt
     4621 gcaaaggccc tgaggtggga tagtgcctag tgttttgagg aagattgagg aggcccatgt
     4681 ggctggagtg gagtgagtaa gggggagaga gggaggaggc gagggcaggg aggtgatgga
     4741 agcaggttgt ggaggacttt gtgggccaag gtgaggactt tggcttcctt tctgagtgat
     4801 atgggcatga gggggacgtt tccaagtata tttctgttgt agttctcccc ttacctccat
     4861 cctgtgatgt gtgaggctga gtgaaaataa acccaccaca taagtgca
//
