LOCUS       NM_001042690            1549 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens Myb/SANT DNA binding domain containing 1 (MSANTD1),
            transcript variant 1, mRNA.
ACCESSION   NM_001042690
VERSION     NM_001042690.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL390059.10 and BC043530.1.
            
            On Nov 23, 2018 this sequence version replaced NM_001042690.1.
            
            Transcript Variant: This variant encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA1965299,
                              SAMEA1968968 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000438480.7/ ENSP00000411584.2
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-384               AL390059.10        22079-22462         c
            385-801             BC043530.1         1125-1541
            802-1549            AL390059.10        15008-15755         c
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="4"
                     /map="4p16.3"
     gene            1..1549
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /note="Myb/SANT DNA binding domain containing 1"
                     /db_xref="GeneID:345222"
                     /db_xref="HGNC:HGNC:33741"
     exon            1..384
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..901
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /note="isoform 1 is encoded by transcript variant 1;
                     myb/SANT-like DNA-binding domain-containing protein 1;
                     Myb/SANT-like DNA-binding domain containing 1"
                     /codon_start=1
                     /product="myb/SANT-like DNA-binding domain-containing
                     protein 1 isoform 1"
                     /protein_id="NP_001036155.1"
                     /db_xref="CCDS:CCDS47003.1"
                     /db_xref="GeneID:345222"
                     /db_xref="HGNC:HGNC:33741"
                     /translation="MVRGAGPGPSLSALSHPTGASGMAAAEGPGYLVSPQAEKHRRAR
                     NWTDAEMRGLMLVWEEFFDELKQTKRNAKVYEKMASKLFEMTGERRLGEEIKIKITNM
                     TFQYRKLKCMTDSESAPPDWPYYLAIDGILAKVPESCDGKLPDSQPPGPSTSQTEASL
                     SPPAKSTPLYFPYNQCSYEGRFEDDRSDSSSSLLSLKFRSEERPVKKRKVQSCHLQKK
                     QLRLLEAMVEEQRRLSRAVEETCREVRRVLDQQHILQVQSLQLQERMMSLLERIITKS
                     SV"
     exon            385..660
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /inference="alignment:Splign:2.1.0"
     exon            661..1549
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1221..1226
                     /regulatory_class="polyA_signal_sequence"
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /note="hexamer: ATTAAA"
     polyA_site      1240
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /note="major polyA site"
     regulatory      1520..1525
                     /regulatory_class="polyA_signal_sequence"
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /note="hexamer: AATAAA"
     polyA_site      1549
                     /gene="MSANTD1"
                     /gene_synonym="C4orf44"
                     /note="major polyA site"
ORIGIN      
        1 agatgtaggc cccattttga gcgtggagct gccttcgagc gagcgtgagc ggcgcctccc
       61 gcccatggtg cgtggggccg ggccggggcc ctcgctgagc gcgctctctc accccacagg
      121 cgcctccggc atggcggcgg ccgaggggcc cggctacctc gtgtctcccc aggcggagaa
      181 gcaccggcgg gcccgcaact ggacggacgc cgagatgcgc ggcctcatgc tggtctggga
      241 ggagttcttc gacgagctca agcagaccaa gcgcaacgcc aaggtgtacg agaagatggc
      301 cagcaagctc ttcgagatga ccggcgagcg caggctgggc gaggagatca agatcaagat
      361 caccaacatg accttccagt acaggaaatt aaaatgcatg acagatagcg agtccgcccc
      421 gcccgactgg ccctattacc tagccattga tgggattctg gccaaggtcc ccgagtcctg
      481 tgatggcaaa ctgccggaca gccagccgcc ggggccctcc acgtcccaga ccgaggcgtc
      541 cctgtcgccg cccgctaagt ccacccctct gtacttcccg tataaccagt gctcctacga
      601 aggccgcttc gaggatgatc gctccgacag ctcctccagc ttactgtccc ttaagttcag
      661 gtcggaggag cggccggtga agaagcgcaa ggtgcagagc tgccacctgc agaagaagca
      721 gctgcggctg ctggaggcca tggtggagga gcagcgccgg ctgagccgcg ccgtggagga
      781 gacctgccgc gaggtgcgcc gcgtgctgga ccagcagcac atcctgcagg tgcagagcct
      841 gcagctgcag gagcgcatga tgagtctgct ggagaggatc atcaccaagt ccagcgtcta
      901 ggccagcagg cggcggcggc ggcggggccg ggcggctggt ggtactgctc aggccaccca
      961 gggcaggcca ctcaggccag gcgggcaagg gggccgcccc gcgagcggag accgccttcc
     1021 acctggcctc tggcaggatg tcccttctga ggggtatttt gaggaacccc caggccctgg
     1081 ggaccgtgag gctccagtct ccagcatgaa tgcccttcct cggacacagg ccagggcctc
     1141 tggggttcac tccgagtaag aacgtcctag agccactctc cagtgtcgtt actatcaatg
     1201 atacttgacg tggctttgat attaaacgta tactttttca ttcttgcctg gaacgcacag
     1261 tttgctgttg ctggcttggt gaggatgccc tgattgatgg atcccgaaaa tgaaagcaga
     1321 tggaaacggg ttggggcagg ctggagctgg gggagctctc tcctgaaggg aaccctgtgt
     1381 cctccctcac caggacctct gcgtctctcc ttaaatggcc tctgacgcct gatgaaaacc
     1441 ccagcgacct tccaggaggc ttttattcag ctctgtttgg agcatcaggt gtttccactg
     1501 cctccttagc aatgacacta ataaaagtcg taacacctgt tcacatgca
//
