LOCUS       NM_001355003            1695 bp    mRNA    linear   PRI 01-AUG-2024
DEFINITION  Homo sapiens MMP24 opposite strand (MMP24OS), transcript variant 1,
            mRNA.
ACCESSION   NM_001355003 NR_102705
VERSION     NM_001355003.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Lee,S.E., Song,J., Bosl,K., Muller,A.C., Vitko,D., Bennett,K.L.,
            Superti-Furga,G., Pandey,A., Kandasamy,R.K. and Kim,M.S.
  TITLE     Proteogenomic Analysis to Identify Missing Proteins from Haploid
            Cell Lines
  JOURNAL   Proteomics 18 (8), e1700386 (2018)
   PUBMED   29474001
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Razooky,B.S., Obermayer,B., O'May,J.B. and Tarakhovsky,A.
  TITLE     Viral Infection Identifies Micropeptides Differentially Regulated
            in smORF-Containing lncRNAs
  JOURNAL   Genes (Basel) 8 (8), 206 (2017)
   PUBMED   28825667
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1695)
  AUTHORS   Eriksson,N., Macpherson,J.M., Tung,J.Y., Hon,L.S., Naughton,B.,
            Saxonov,S., Avey,L., Wojcicki,A., Pe'er,I. and Mountain,J.
  TITLE     Web-based, participant-driven studies yield novel genetic
            associations for common traits
  JOURNAL   PLoS Genet 6 (6), e1000993 (2010)
   PUBMED   20585627
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL121753.32.
            
            On Nov 22, 2018 this sequence version replaced NM_001355003.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR3476690.440686.1,
                                           SRR3476690.712150.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2162328 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000456790.2/ ENSP00000489588.1
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-114               AL121753.32        87729-87842         c
            115-1695            AL121753.32        86072-87652         c
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="20"
                     /map="20q11.22"
     gene            1..1695
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
                     /note="MMP24 opposite strand"
                     /db_xref="GeneID:101410538"
                     /db_xref="HGNC:HGNC:44421"
     exon            1..114
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
                     /inference="alignment:Splign:2.1.0"
     exon            115..1695
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
                     /inference="alignment:Splign:2.1.0"
     CDS             118..333
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
                     /note="MMP24 antisense RNA 1"
                     /codon_start=1
                     /product="protein MMP24OS"
                     /protein_id="NP_001341932.1"
                     /db_xref="CCDS:CCDS86948.1"
                     /db_xref="GeneID:101410538"
                     /db_xref="HGNC:HGNC:44421"
                     /translation="MGAQLSGGRGAPEPAQTQPQPQPQPAAPEGPEQPRHPPQPQPQP
                     QPQPQPEPSPWGPLDDVRFLIACTSWY"
     polyA_site      724
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
                     /note="major polyA site"
     regulatory      1087..1092
                     /regulatory_class="polyA_signal_sequence"
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
                     /note="hexamer: ATTATA"
     polyA_site      1113
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
     regulatory      1670..1675
                     /regulatory_class="polyA_signal_sequence"
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
                     /note="hexamer: AATAAA"
     polyA_site      1695
                     /gene="MMP24OS"
                     /gene_synonym="MMP24-AS1"
                     /note="major polyA site"
ORIGIN      
        1 ctttccgctc caacgcacgg agggtgaggt cggtacgcgg tggtggcgtc acggcgccag
       61 ctcctcccga cgccgaggtg ggttccggga gacccgcggg tctggctgcg agagaccatg
      121 ggggctcagc taagcggcgg ccgcggcgcc ccggagcctg cgcaaaccca gccccagccc
      181 cagccccagc ctgcggcgcc ggagggcccg gaacagcccc ggcatccgcc ccagccccag
      241 ccccagcccc agccccagcc ccagcccgag cccagcccgt gggggccgct ggacgacgtg
      301 cgcttcctca tcgcctgcac ttcctggtac tgacggcgtc ctccgcagga tgtcgcccgt
      361 ctgtccgccg tcccctgtgg ttcttgcctg ccttgtctcc tctccccacg tccctgcgtc
      421 tcttacaccc cctcccaccc gaggctcccc agagatagca gagaattcga agaggtcgcc
      481 ggggactgga aagaagtccc ggcagggccg ccttcgcagt ctacacccca gcctgcttcc
      541 cagcctacac ccagacccag ctcagacctt cgtgaccacc ccatcccttt ctccggctgg
      601 ctgggtcggg ggcatccctc tctgtcgctg gcttccagag gcaggacagg cctcctggta
      661 agcccgcaaa gttgctgacc tcctgacttc gtctgccttt tattaatatc tgtattgctg
      721 ataaccgtgc tcttgactat gtgtcccagg tcatgtccca ggtcatggag aagcccgtgc
      781 cacagtgacc ctccccatac tcctgggggg gctgctctcc atcctggatc gtaaggaggc
      841 atcatcaggc tgtgttcctg gaaccccaat aaccctgggc ccccagggcc agcctgttgt
      901 agagggaggc tatctgaccg ccggtctggc agaggagatg ggtgggcagc tcccagacac
      961 cccaaaggac ccggttctct tcccagagcg tcctaaggtt actcttggaa cctgatcttt
     1021 gttccctcat cccagggaaa tgacacactc tgtatttctg ttttatttag aaatgattta
     1081 aaaaacatta tacaaaggct gatcagttta aaatgtgact gacactgaaa tgctgtgatg
     1141 tcccccaggc tgaggggaag ctaggctctg gggcccccag tgctttgccc ctctgtctgc
     1201 cctgtcctgg ggtgatggac aaacagatga ccacaggcag gagaatctga gattggaagc
     1261 ctctaggctg agccctctgg gcctggcccc acatccctca cctctgcagc ctgggctgcc
     1321 tgcctccatc tcctgttcat tctcagctgg cctgccagga gccaatgggg agcctggcgg
     1381 gaggcggggg tgcctagagc tttcaagaag tgagagcacc aacctgagga gtggacaggg
     1441 accaggaagt gggggaaggg aggccaggaa gaggtggata caggagacac ttctcatctc
     1501 atctcagacc ctagaggggt ccacagatgg ggacacaaga cccagccagc ccactggatg
     1561 gcccgggcaa gtaacaacct ctctgtgctt catctgaggg cacggtgaga gttaccgtcg
     1621 gcctcccagg gcctaacacg agtttcatgt gagtggacag gtgtgagcta ataaagtgct
     1681 ttgcaaagta taaaa
//
