LOCUS       NM_001164419             774 bp    mRNA    linear   PRI 05-JUN-2024
DEFINITION  Homo sapiens methyl-CpG binding domain protein 3 like 4 (MBD3L4),
            mRNA.
ACCESSION   NM_001164419 XM_928688
VERSION     NM_001164419.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Grimwood,J., Gordon,L.A., Olsen,A., Terry,A., Schmutz,J.,
            Lamerdin,J., Hellsten,U., Goodstein,D., Couronne,O.,
            Tran-Gyamfi,M., Aerts,A., Altherr,M., Ashworth,L., Bajorek,E.,
            Black,S., Branscomb,E., Caenepeel,S., Carrano,A., Caoile,C.,
            Chan,Y.M., Christensen,M., Cleland,C.A., Copeland,A., Dalin,E.,
            Dehal,P., Denys,M., Detter,J.C., Escobar,J., Flowers,D.,
            Fotopulos,D., Garcia,C., Georgescu,A.M., Glavina,T., Gomez,M.,
            Gonzales,E., Groza,M., Hammon,N., Hawkins,T., Haydu,L., Ho,I.,
            Huang,W., Israni,S., Jett,J., Kadner,K., Kimball,H., Kobayashi,A.,
            Larionov,V., Leem,S.H., Lopez,F., Lou,Y., Lowry,S., Malfatti,S.,
            Martinez,D., McCready,P., Medina,C., Morgan,J., Nelson,K.,
            Nolan,M., Ovcharenko,I., Pitluck,S., Pollard,M., Popkie,A.P.,
            Predki,P., Quan,G., Ramirez,L., Rash,S., Retterer,J., Rodriguez,A.,
            Rogers,S., Salamov,A., Salazar,A., She,X., Smith,D., Slezak,T.,
            Solovyev,V., Thayer,N., Tice,H., Tsai,M., Ustaszewska,A., Vo,N.,
            Wagner,M., Wheeler,J., Wu,K., Xie,G., Yang,J., Dubchak,I.,
            Furey,T.S., DeJong,P., Dickson,M., Gordon,D., Eichler,E.E.,
            Pennacchio,L.A., Richardson,P., Stubbs,L., Rokhsar,D.S.,
            Myers,R.M., Rubin,E.M. and Lucas,S.M.
  TITLE     The DNA sequence and biology of human chromosome 19
  JOURNAL   Nature 428 (6982), 529-535 (2004)
   PUBMED   15057824
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AC010606.7.
            
            On Nov 20, 2020 this sequence version replaced NM_001164419.2.
            
            Summary: This gene encodes a member of a family of proteins that
            are related to methyl-CpG-binding proteins but lack the methyl-CpG
            binding domain. There is no definitive support for transcription of
            this locus, and the transcript structure is inferred from other
            family members. [provided by RefSeq, Aug 2009].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189667.291546.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148874
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000381394.9/ ENSP00000370801.4
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                AC010606.7         84981-85060
            81-774              AC010606.7         86718-87411
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19p13.2"
     gene            1..774
                     /gene="MBD3L4"
                     /note="methyl-CpG binding domain protein 3 like 4"
                     /db_xref="GeneID:653656"
                     /db_xref="HGNC:HGNC:37206"
     exon            1..80
                     /gene="MBD3L4"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..662
                     /gene="MBD3L4"
                     /note="MBD3-like 4; MBD3-like protein 4"
                     /codon_start=1
                     /product="putative methyl-CpG-binding domain protein
                     3-like 4"
                     /protein_id="NP_001157891.1"
                     /db_xref="CCDS:CCDS54205.1"
                     /db_xref="GeneID:653656"
                     /db_xref="HGNC:HGNC:37206"
                     /translation="MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAA
                     RSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQ
                     GEGSSPLHLESVLSILAPGTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQ
                     LPPPLSGQLVTPADIRRQARRVKKARERLAKALQADRLARQAEMLTCR"
     exon            81..774
                     /gene="MBD3L4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcaagagtgg ggtcagcaag agaaactcta cggctatggg agagcctgcg ttcacctctt
       61 ttccgagccc acctgttctg gggaagctca aaagaaacat gatgccctgg gctttacaga
      121 agaaacgaga aatccacatg gccaaggccc atcggagacg agctgcgagg tctgctctcc
      181 ccatgagact caccagctgc atcttccgga ggccggtgac aaggatcagg tctcatcctg
      241 acaaccaggt cagacgcaga aaaggggacg agcacctgga gaagccgcag caactctgcg
      301 cctaccggag actgcaggcc ctgcagccct gcagcagcca aggagaaggt tcaagtccac
      361 tgcatttgga gagcgtctta agtatccttg caccggggac ggccggtgaa tctctggaca
      421 gagctggtgc tgagcgtgtg cgcatcccgc ttgagcccac ccctgggcgg tttccagctg
      481 tggcaggggg gccaacccca ggaatgggtt gtcagctccc accgcccctc tctggccaat
      541 tggtgactcc tgcagatatc cggagacagg ccaggagggt gaagaaagcc agggagagac
      601 tggccaaggc cttgcaggca gacaggctgg ccaggcaggc agaaatgctg acatgtagat
      661 gaagcgcagt cctgggcttt cggtcccttt cttttaatgc ccatcctcat tcctactctg
      721 aattgtcaca cttttccctt ccccaccagt tctttaataa aagtatttga aagg
//
