LOCUS       XM_047432164            3266 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens LysM domain containing 4 (LYSMD4),
            transcript variant X6, mRNA.
ACCESSION   XM_047432164
VERSION     XM_047432164.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000015.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3266
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
     gene            1..3266
                     /gene="LYSMD4"
                     /note="LysM domain containing 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 233 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 15 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:145748"
                     /db_xref="HGNC:HGNC:26571"
     CDS             900..1544
                     /gene="LYSMD4"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 4 isoform X5"
                     /protein_id="XP_047288120.1"
                     /db_xref="GeneID:145748"
                     /db_xref="HGNC:HGNC:26571"
                     /translation="MFSAFRVINNGKVADIKKVNNFIREQDLYALKSVKIPVRNHGIL
                     METHKELKPLLSPSSETTVTVELPEADRAGAGTGAQAGQLMGFFKGIDQDIERAVQSE
                     IFLHESYCMDTSHQPLLPAPPKTPMDGADCGIQWWNAVFIMLLIGIVLPVFYLVYFKI
                     QASGETPNSLNTTVIPNGSMAMGTVPGQAPRLAVAVPAVTSADSQFSQTTQAGS"
     polyA_site      3266
                     /gene="LYSMD4"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 aagggacttg gagggaagcg ggcctggagc tgctgccgcc gcccctgagc tcggacgcga
       61 aggctggccc cgtccccggg ctgccgccgt ggtcctgcag tgaagaaaat gaggcacgag
      121 gaattgttaa ccaagacctt ccaaggccca gctgttgtgt gtgggactcc gaccagccac
      181 gtatacatgt ttaagaatgg cagtggggac tcgggggact cttctgaaga agagtctcac
      241 cgtgtggttt tgcggccccg gggcaaggag cgccacaaga gcggtgtcca ccagcctccc
      301 caggcgggag caggtgacgt ggtgctgctg cagcgggagc tggcccagga ggacagcctc
      361 aacaagctgg cgctgcagta tggctgcaaa gtaagacacc cctcaggggc cctgccccgc
      421 tccgtttcaa ggaacacggg gaactcactg cagggtgggt gcccttgccg cccttcttaa
      481 ccctgccagg ccgtcaggag aggcctgctg tagcagccaa ggactcccct atttagccag
      541 aattggaatg caggtgggag tacctttagt tcccaaccct ggcccccaaa gagggagggt
      601 tagcgcattt ctttctctgc agggaacttc tccttttcct gttttctcca cactgaaatt
      661 ctgaaacctt ttttcttctt tcgagcacat tttattttag acctaatggg gctggagata
      721 ccaggcagaa tttaattccg gatttctatg gtatgcttgc ttttctcgct gctcttattt
      781 ttctgaacct ttcttggtgg tagcttactt gacttttggt aaagttttac cttctctcgt
      841 ttagaactgc atggtctttt gtatgctgtg tatctatata accctgtttt tctctaatta
      901 tgttttcagc attcagagtg attaacaatg gcaaagttgc agatatcaag aaagtcaaca
      961 acttcatcag agaacaagac ttatatgctt tgaaatctgt taagattcca gtgagaaacc
     1021 atgggatcct gatggagacc cacaaagaac tgaaacccct tctgagcccg tcttccgaga
     1081 ccacagtgac cgtggaactg ccagaggcag acagagcagg cgcgggcacc ggtgcccagg
     1141 ccggccaact gatgggcttc tttaagggga ttgaccagga tattgagcgt gcagtgcagt
     1201 cagaaatctt tctacatgaa agttactgca tggacacctc ccatcagcca ctgctcccgg
     1261 cacctccgaa gacgcctatg gatggtgcag attgtggcat tcagtggtgg aatgctgttt
     1321 tcatcatgct gctgattggt attgtcttgc ctgtctttta tttggtctac tttaaaatac
     1381 aagctagtgg tgagacccct aatagcttga acacaactgt catccccaat ggctcgatgg
     1441 caatgggtac agttccaggg caagccccca gactagcagt tgcagtgcca gccgtcactt
     1501 ctgcagacag ccagttcagt cagaccaccc aagcggggag ctaagctttg tttttaaaga
     1561 ctaggcccag ctttagcaat tggctgttga tgtgcctcag ctgtcactgg cgatgtccta
     1621 ggggtgctgc attttgcttc cggggaagga tggacacttt tcagaagtca ctgcagtatt
     1681 cccaattgca ctggccctgg gcatggcctt acccagtcta agctggcagg atctaaaaca
     1741 gcagcgacct cggcccctat ccagagaggt gcagcaagag agccatttcc ctgtgacatt
     1801 tagtggactg gccagttcat agcagcactg tgaggacccc caagttggac gtgctcggag
     1861 ggaaagattt atggcctctg tcgagggacc tgcagcgtga gagccagtgg catctgcgcg
     1921 gcttgcctgg ctcttgctgt atcctcactt cctgtggagc ggggattggc tctgagaagg
     1981 agtgttctct gtctgcctgg caaaggtgct gtggaatagg cttggcatgc caccctgttt
     2041 tagagagtga cagttacagt tgtaacaagc ctacttcata ttggccccct cagttagcct
     2101 ttttgaggca atgccatttc tagagttgaa aaagccctgg acccaaactg cggcactgtt
     2161 gaataaaggg cagtcctact cctgtccttt tagagtggct tagtgtgaca cacaggcatc
     2221 tcccaggcca agcacacaca ggctgcgccc agttccgcag gagccgtccc acagcgtggc
     2281 tctctggatt ctcccacttg tcctccttgg aaggagctct tgctggccag tgtttggagg
     2341 ggaggatgag tgcctgtcac tgaggcctca ctatggttgg cgtctgaagc tgggcggtcg
     2401 tcaggcctgt gctgagagcc gcagcccctg tgcacaccta acacagggcg ctccccctgc
     2461 tgcttccctg gctcagttct tcggagctcc agagtgagaa ggccgcttcg tcctttttct
     2521 ctgggtgatg cccttagaat aacactatat gcaatgtaac tcacaatgtt ccaggaccaa
     2581 agacttgatg gaggggctag aggcgaccct tgttgtaaaa ggcgatcaga acacctgagg
     2641 gaggaagggg cttgcagttt tcccagccct tctcgctgcc aaggcagcag tggtgctgtg
     2701 gatgggctgg ggactgcggg acagagcctg ctactacttg ggagttggtg ctgccctgtg
     2761 gcatggaggg gtgggagggg ctgagatggc tgctggcccg gcctccaaga gttctggaca
     2821 ggaggcagac actgcccaga tgctcggtgg agggacagtg atggcctttg actcatgagg
     2881 cctggagaaa agtatcaaag gtctcaccat gtaagagtga tttccgattt ctctcctttc
     2941 agttgtgtga aaaaacagct ggcctgggtt ccattagcaa attaaatcat cttcaatctt
     3001 aaattagaaa ccagaatgat cttcaggata aaaagaactt ctgaatctct gcaataggaa
     3061 atgtttcgat catgcaagtg ctttcccagc caaatgtctg tgctctctgt gtcactgagg
     3121 gccacaggtt cctctaacat ctgtcactgt cacttcacca ggcaggcctt ggagttccat
     3181 gacaaaatca cttttgtcag acaaagaatg tatcctttac ttttctcaaa tggaataaaa
     3241 ttatttcttc tgtggaggaa aattga
//
