LOCUS       XM_017001301            5919 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens lymphocyte antigen 9 (LY9), transcript
            variant X3, mRNA.
ACCESSION   XM_017001301
VERSION     XM_017001301.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017001301.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5919
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..5919
                     /gene="LY9"
                     /gene_synonym="CD229; hly9; mLY9; SLAMF3"
                     /note="lymphocyte antigen 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     ESTs, 36 long SRA reads, and 88% coverage of the annotated
                     genomic feature by RNAseq alignments, including 38 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:4063"
                     /db_xref="HGNC:HGNC:6730"
                     /db_xref="MIM:600684"
     CDS             15..2009
                     /gene="LY9"
                     /gene_synonym="CD229; hly9; mLY9; SLAMF3"
                     /codon_start=1
                     /product="T-lymphocyte surface antigen Ly-9 isoform X3"
                     /protein_id="XP_016856790.1"
                     /db_xref="GeneID:4063"
                     /db_xref="HGNC:HGNC:6730"
                     /db_xref="MIM:600684"
                     /translation="MVAPKSHTDDWAPGPFSSKPQRSQLQIFSSVLQTSLLFLLMGLR
                     ASGKDSAPTVVSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKENVTIMVKS
                     YLGRLDITKWSYSLCISNLTLNDAGSYKAQINQRNFEVTTEEEFTLFVYEQLQEPQVT
                     MKSVKVSENFSCNITLMCSVKGAEKSVLYSWTPREPHASESNGGSILTVSRTPCDPDL
                     PYICTAQNPVSQRSSLPVHVGQFCTDPGASRGGTTGETVVGVLGEPVTLPLALPACRD
                     TEKVVWLFNTSIISKEREEAATADPLIKSRDPYKNRVWVSSQDCSLKISQLKIEDAGP
                     YHAYVCSEASSVTSMTHVTLLIYRRLRKPKITWSLRHSEDGICRISLTCSVEDGGNTV
                     MYTWTPLQKEAVVSQGESHLNVSWRSSENHPNLTCTASNPVSRSSHQFLSENICSGPE
                     RNTKLWIGLFLMVCLLCVGIFSWCIWKRKGRCSVPAFCSSQAEAPADTPEPTAGHTLY
                     SVLSQGYEKLDTPLRPARQQPTPTSDSSSDSNLTTEEDEDRPEVHKPISGRYEVFDQV
                     TQEGAGHDPAPEGQADYDPVTPYVTEVESVVGENTMYAQVFNLQGKTPVSQKEESSAT
                     IYCSIRKPQVVRTTFSVSQGPQSEELFLRPFELKIRDSHG"
     polyA_site      5919
                     /gene="LY9"
                     /gene_synonym="CD229; hly9; mLY9; SLAMF3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gaaaatagat catcatggtg gcaccaaaga gtcacacaga tgactgggct cctgggcctt
       61 tctccagtaa gccacagagg agtcagctgc aaatattctc ttctgttcta cagacctctc
      121 tcctcttcct gctcatggga ctaagagcct ctggaaagga ctcagcccca acagtggtgt
      181 cagggatcct agggggttcc gtgactctcc ccctaaacat ctcagtagac acagagattg
      241 agaacgtcat ctggattggt cccaaaaatg ctcttgcttt cgcacgtccc aaagaaaatg
      301 taaccattat ggtcaaaagc tacctgggcc gactagacat caccaagtgg agttactccc
      361 tgtgcatcag caatctgact ctgaatgatg caggatccta caaagcccag ataaaccaaa
      421 ggaattttga agtcaccact gaggaggaat tcaccctgtt cgtctatgag cagctgcagg
      481 agccccaagt caccatgaag tctgtgaagg tgtctgagaa cttctcctgt aacatcactc
      541 taatgtgctc cgtgaagggg gcagagaaaa gtgttctgta cagctggacc ccaagggaac
      601 cccatgcttc tgagtccaat ggaggctcca ttcttaccgt ctcccgaaca ccatgtgacc
      661 cagacctgcc atacatctgc acagcccaga accccgtcag ccagagaagc tccctccctg
      721 tccatgttgg gcagttctgt acagatccag gagcctccag aggaggaaca acgggggaga
      781 ctgtggtagg ggtcctggga gagccagtca ccctgccact tgcactccca gcctgccggg
      841 acacagagaa ggttgtctgg ttgtttaaca catccatcat tagcaaagag agggaagaag
      901 cagcaacggc agatccactc attaaatcca gggatcctta caagaacagg gtgtgggtct
      961 ccagccagga ctgctccctg aagatcagcc agctgaagat agaggacgcc ggcccctacc
     1021 atgcctacgt gtgctcagag gcctccagcg tcaccagcat gacacatgtc accctgctca
     1081 tctaccgcag gctgaggaag cccaaaatca cgtggagcct caggcacagt gaggatggca
     1141 tctgcaggat cagcctgacc tgctccgtgg aggacggggg aaacactgtc atgtacacat
     1201 ggaccccgct gcagaaggaa gctgttgtgt cccaagggga atcacacctc aatgtctcat
     1261 ggagaagcag tgaaaatcac cccaacctca catgcacagc cagcaaccct gtcagcagga
     1321 gttcccacca gtttctttct gagaacatct gttcaggacc tgagagaaac acaaagcttt
     1381 ggattgggtt gttcctgatg gtttgccttc tgtgcgttgg gatcttcagc tggtgcattt
     1441 ggaagcgaaa aggacggtgt tcagtcccag ccttctgttc cagccaagct gaggccccag
     1501 cggatacacc agaacccaca gctggccaca cgctatactc tgtgctctcc caaggatatg
     1561 agaagctgga cactcccctc aggcctgcca ggcaacagcc tacacccacc tcagacagca
     1621 gctctgacag caacctcaca actgaggagg atgaggacag gcctgaggtg cacaagccca
     1681 tcagtggaag atatgaggta tttgaccagg tcactcagga gggcgctgga catgacccag
     1741 cccctgaggg ccaagcagac tatgatcccg tcactccata tgtcacggaa gttgagtctg
     1801 tggttggaga gaacaccatg tatgcacaag tgttcaactt acagggaaag accccagttt
     1861 ctcagaagga agagagctca gccacaatct actgctccat acggaaacct caggtggtga
     1921 gaactacatt ctctgtatcc caaggcccac agagtgagga actattcctt agaccctttg
     1981 aactgaaaat ccgagattcc catggctaag gatcttaaat tctacccact atgcacccct
     2041 cagatacatt ccatggtcaa cagagatgca taaacaaata ttcctgacat ctgtgtgacc
     2101 aaaggctgaa catttctaat tgatttaata atatcttatg ttggttattt ttaacactga
     2161 cctgaatgac agcttataca ctcaaacaag gtagggtctt tatagctttt taaatctatc
     2221 tctaacccta atcctaatct acctaaatga caacttctca aaaccattga aaattagcta
     2281 acaatttaac aacaagaatt tttggaaaat acaccaccac ctacagtaca ttagttttat
     2341 tctagtgttt aaaaaaatcc cagccgggcg cggtggctca tacctgtaat cccagcactt
     2401 tgggaggcca aggcgggtgg atcacaaggt caggagatgg agaccatcct ggctaacatg
     2461 gtgaaactcc gtctctacta aaaatacaaa aaaaattagc caggcgtggt ggcaggcgcc
     2521 tgtagttcca actactcaga gactgaggca ggagaatggc gtgaacccag gaggcagagc
     2581 ttacagtgag ccaagttcgt gccactgcac tccagcctgg gcaacagaac aagactccat
     2641 ctcaaaaaaa aaaaaaaaaa aaaaattccc agcctgggca acatggtgaa accctgtctt
     2701 tataaaaagt tcaaaaaaaa ttacccaggc ctgtggtggt acacacctgt agtcccagct
     2761 acttaggaca cttaagtggg aggaccgctt gagccgggga gttcaaggct gcagtgagcc
     2821 aagatcatgc cactgaaatc tagcctgggt gacagagtga gaccatgtct taaaaaaaaa
     2881 aaaaaatccc ttacaggtag aatttatcat taaataatca taatgataat aataactgac
     2941 ttgcttttat atgaagtttt gcagttacaa taccttgata cacattcttc tttgatcttt
     3001 gtaatacttc tagaaaagtg ttgtcatcca cattttatag ccaaagaaac agattcaagg
     3061 aagttaattt tgcctaaggt gacaaagata gtacttggaa gttccagtat taagaaccat
     3121 gaggcgtttt aagatcatcc tgagtaatct taaataattc accttgatct ggctgtccat
     3181 ttcattttca ctttcctgaa aacatcgtgt ccattcatac ttttgctttc aaatctcccc
     3241 caaattccct ccctataaca tattcaaaaa aatatttttt aaaaaactct cggctgggcg
     3301 tggtggctca tgcctgtaat cccagcactt tgggaggccg aggcaggtgg atcacctgag
     3361 gtcaggagtt caagaccagc ctggccaaca tggtaaaacc ccatctctac taaaaatatt
     3421 aaaattacct gaatgtggtg gcaggcacct gtaatcccag ctactcagga ggctgaggca
     3481 ggagaattgc ttgaacccag gaggtggagg ttgcggtgag cagagatcac accattgcac
     3541 tccagcctgg gcaacaagag caaaactcca tctcaaaaaa aaagaaaaga ctacagttga
     3601 cccttgaaca attcaggggt ttaggagtgc caaccccacc ccactccatg caatcaaaaa
     3661 tcattctata actttgactc tccagaactt aactactaac agcctactgt tgaccagaag
     3721 ccttaccaaa aacataaaca tttgattaac acatattttg catgttacgt gtattatata
     3781 ctgtattctt acaataaagt aagctagaga aaagaaatta ttaagaaaat cataaggaag
     3841 ataaaatatg tatactattc attaagtgga attggatcat tgtaaaggtc ttcatcctca
     3901 ccttcacatt gagtaggctg aggaggaaga ggaagggttg gtcttgttct ttcaagagtg
     3961 gtagaggtaa aagaggtaga ggaggtaaaa ggggaggcag gagaggcagg cacactcagt
     4021 gtgatgttta ttgaaaaaaa atctgcatat aagtggccat gcagttcaaa catatgttgc
     4081 acttatgcct ggtgttccat tattggaaca ctaagcgtgt aggagttatt tatattctac
     4141 tgctcaagat catcaccagg gtctgatttt tcactcatgc acaaattcaa aaaattgcaa
     4201 cctcctgcgt aaatgggtta aagttacttg actacttaat aaattgtatg cacagttcct
     4261 aagggttttt cagaagctga aggtggggga tatcactgca ctgtggtaaa gaggaaacac
     4321 atcatgaaaa aggaatttgg gttgggcctt aaaagatgga tagaatttgc tcagtaaaca
     4381 cttgttggga tgtgtggttt ggttcaacca tcatccatct catcctgact tctagacagt
     4441 agtctaatgc ttagccagct agagactttg ccttggaacc taaggccaaa tctgtgctgt
     4501 tcactgcatt cccagagctg ctttctactc tggcctggcc ctttgtgttt gggtcaatac
     4561 cggtcaaact taaagtcagt ccctgctctg agtttcagaa tgaccaccac atgtctggtc
     4621 agtcctgcaa ggcacacaca ctaccctgga gactgagacc cctgaaacca cctcacttac
     4681 agtgtaagtt gaaatcattg catttcctga gccaaactct tgacaactat atcttttgtc
     4741 ttcagaattg tcaggaccag gaattctggt tttggatctc tgaaggccat tattgcctac
     4801 ttgatctgga aattctcaaa cctactttag ttcttatttc tgatatacct ctctgtacaa
     4861 catctcaaag gtttatgcta tccccaagct gttgctggta cccaacctcc cgctcctctg
     4921 ggtcagcaca gagcttatct gctctttaga gccttccctg aacactctca gacagggaag
     4981 cctaagaacc cttgggaaca gcttggggac taatggtctg gaccattact ttggaactta
     5041 acctctgcca tctaaattat cttcttataa atgttcgttt tgtttctcca gctagggcag
     5101 agattggaat catttgacag tagcttcgtg agggcaagcc ccttcattgt cattttttta
     5161 tcccctggat ttgctgcact aaactgtctt gtgttgtcct tgcagagagt ccagcccaca
     5221 gcctttccta ttaggagcct ccataaatgc ttggcatcag gctggttgat tgcgccatcc
     5281 ctgggccagc acatatgact ctacttctgt aggatggacc agtcatagcc tggccttgcc
     5341 ttcctctttc atcagcctca ctcttccaag gctttattaa ccatattctt ttgtggattt
     5401 ttggctcaca ggtggtgcca ccaccacaac agaatgatct tgagattcct gaaagtccta
     5461 cctatgaaaa tttcacctga aaggaaaagc agctgctgcc tctctcctgg gaccgtgggg
     5521 ttggaaagtc agctggacct catggggcct ggggctcaca gacagaagca cctcagaatt
     5581 tccttcagtg cctcagagat gcctggatgt ggcccctccc cctccttctc acccttaagg
     5641 actcccaaac ccattaatag ttcagacaca ggctccttct tggagcctat gggcttcaga
     5701 tgtctttgcc ccatttgtca cctcgcacac ttatagcgtt tcctcctcga aattctacca
     5761 agactggtca aatgttgctg aggggcctgg accagctgtc ctttacacca ccttctcaac
     5821 actgctgaaa agaacccaag agaattgtca cacatgacac aagatgtaca taatatcatg
     5881 ctcactgcag tgttatttaa aataaaaggc aggaaataa
//
