LOCUS       NM_001368160            1300 bp    mRNA    linear   PRI 05-AUG-2024
DEFINITION  Homo sapiens lymphocyte antigen 6 family member L (LY6L), mRNA.
ACCESSION   NM_001368160
VERSION     NM_001368160.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1300)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC083982.13.
            
            On Nov 17, 2020 this sequence version replaced NM_001368160.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2158188,
                              SAMEA2159080 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            MANE Ensembl match        :: ENST00000562505.2/ ENSP00000455811.1
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                AC083982.13        91142-91171
            31-121              AC083982.13        91548-91638
            122-238             AC083982.13        91723-91839
            239-1300            AC083982.13        92937-93998
FEATURES             Location/Qualifiers
     source          1..1300
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="8"
                     /map="8q24.3"
     gene            1..1300
                     /gene="LY6L"
                     /note="lymphocyte antigen 6 family member L"
                     /db_xref="GeneID:101928108"
                     /db_xref="HGNC:HGNC:52284"
     exon            1..30
                     /gene="LY6L"
                     /inference="alignment:Splign:2.1.0"
     exon            31..121
                     /gene="LY6L"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..465
                     /gene="LY6L"
                     /note="lymphocyte antigen 6 complex locus protein L;
                     lymphocyte antigen 6L"
                     /codon_start=1
                     /product="lymphocyte antigen 6L preproprotein"
                     /protein_id="NP_001355089.1"
                     /db_xref="CCDS:CCDS94350.1"
                     /db_xref="GeneID:101928108"
                     /db_xref="HGNC:HGNC:52284"
                     /translation="MERLVLTLCTLPLAVASAGCATTPARNLSCYQCFKVSSWTECPP
                     TWCSPLDQVCISNEVVVSFKWSVRVLLSKRCAPRCPNDNMKFEWSPAPMVQGVITRRC
                     CSWALCNRALTPQEGRWALRGGLLLQVGLSLLRALL"
     exon            122..238
                     /gene="LY6L"
                     /inference="alignment:Splign:2.1.0"
     exon            239..1300
                     /gene="LY6L"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1281..1286
                     /regulatory_class="polyA_signal_sequence"
                     /gene="LY6L"
                     /note="hexamer: AATAAA"
     polyA_site      1300
                     /gene="LY6L"
                     /note="major polyA site"
ORIGIN      
        1 gcagatccct gcagcccggc aggagagaag gctgagcctt ctggcgtcat ggagaggctc
       61 gtcctaaccc tgtgcaccct cccgctggct gtggcgtctg ctggctgcgc cacgacgcca
      121 gctcgcaacc tgagctgcta ccagtgcttc aaggtcagca gctggacgga gtgcccgccc
      181 acctggtgca gcccgctgga ccaagtctgc atctccaacg aggtggtcgt ctcttttaaa
      241 tggagtgtac gcgtcctgct cagcaaacgc tgtgctccca gatgtcccaa cgacaacatg
      301 aagttcgaat ggtcgccggc ccccatggtg caaggcgtga tcaccaggcg ctgctgttcc
      361 tgggctctct gcaacagggc actgacccca caggaggggc gctgggccct gcgagggggg
      421 ctcctgctcc aggtgggcct cagcctcctc agggccctgt tgtgagggcc ctccctttac
      481 gccccctcct ggccctgctg gcccatcccg tctcctgcct ccaactgcca tcctgcctcc
      541 gccccttcca ggacactggg gggggaccct ccctctctga ggtggtgggg agggtgccat
      601 tgcctccatc ccggatctag ccacctcact cctccccacc gggggcccct ttgctggaga
      661 accccaagga ttcagcaact gctcctcctg gggaaggaca gtgcctctga tgtgggtgat
      721 gggaaggacg gtgcctctga tgtgggtgat gggaaggacg gtgcctctgg tgtgggtgat
      781 gggaaggacg gtgcctctgg tgtgggtgat gggatggacg gtgcctctgg tgtgggtgat
      841 gggaaggacg gtgcctctgg tgtgggtgat gagaaggacg gtgcctccgg tgtgggtgat
      901 gggaaggacg gtacctccgg tgtgggtgac gggaagaatg gtgcctccag tgtgggtgat
      961 gggaaggatg gtgcctctga tgggcaatgg ggaaggatgg tgcctccggt gttgggtgat
     1021 ggggaaggac ggtgcctctg gtgttggtgg tgggaaagac agtgtctctg gtgggcgatg
     1081 gccccttgca tgaggcccct tgccctgaat gctgtccagg acccttcgag gggcagaaga
     1141 acctgggtgc ggccacagct ggggctccca ctctgccttc ccatttccag ccccctctgc
     1201 ccaagggaaa cccaggaagg ataacactgt gggtgccccc acctgtgcat tgggaccacg
     1261 accttcaccc tcttggagac aataaactct catgccccca
//
